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Keywords = interspecific fungal interaction

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29 pages, 2090 KiB  
Review
Nematode Pheromones as Key Mediators of Behavior, Development, and Ecological Interactions
by Xi Zheng, Junjie Liu and Xin Wang
Biomolecules 2025, 15(7), 981; https://doi.org/10.3390/biom15070981 - 9 Jul 2025
Viewed by 497
Abstract
Plant parasitic nematodes cause huge economic losses to agriculture and forestry every year, and chemical insecticides destroy the ecological environment. Researching the mechanism by which small-molecule signaling substances regulate nematode behavior and development is important for developing environmentally friendly biological control agents. Nematode [...] Read more.
Plant parasitic nematodes cause huge economic losses to agriculture and forestry every year, and chemical insecticides destroy the ecological environment. Researching the mechanism by which small-molecule signaling substances regulate nematode behavior and development is important for developing environmentally friendly biological control agents. Nematode pheromones are essential chemicals signaling intraspecies and interspecies communication, regulating development, reproduction, and social behavior. Their structural diversity enables ecological adaptation and cross-kingdom interactions, influencing fungal predation and plant immunity. This review focuses on the classification, function, and regulatory mechanisms of nematode pheromones, interspecific signal transmission, and biosynthesis pathways. We pay special attention to their potential as environmentally friendly biological control agents as well as the challenges currently encountered in their application. Full article
(This article belongs to the Section Natural and Bio-derived Molecules)
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14 pages, 1144 KiB  
Review
Silicon-Mediated Interactions Between Plant Antagonists
by Marie-Emma Denarié, Uffe N. Nielsen, Susan E. Hartley and Scott N. Johnson
Plants 2025, 14(8), 1204; https://doi.org/10.3390/plants14081204 - 14 Apr 2025
Cited by 2 | Viewed by 799
Abstract
The prolonged arms race between plants and their antagonists has resulted in the evolution of multiple plant defence mechanisms to combat attacks by pests and pathogens. Silicon (Si) accumulation occurs mainly in grasses and provides a physical barrier against antagonists. Biochemical pathways may [...] Read more.
The prolonged arms race between plants and their antagonists has resulted in the evolution of multiple plant defence mechanisms to combat attacks by pests and pathogens. Silicon (Si) accumulation occurs mainly in grasses and provides a physical barrier against antagonists. Biochemical pathways may also be involved in Si-mediated plant resistance, although the precise mode of action in this case is less clear. Most studies have focussed on Si-based effects against single attackers. In this review, we consider how Si-based plant resistance operates when simultaneously and/or sequentially attacked by insect herbivores, fungal phytopathogens, and plant parasitic nematodes and how the plant hormones jasmonic acid (JA) and salicylic acid (SA) are involved. Si defence may mediate both intra- and interspecific competition and facilitation. Si has been found to impact plant-mediated interactions between insect herbivores within the same feeding guild and across different feeding guilds, with varying patterns of JA and SA. These results suggest that hormonal crosstalk may play a role in the Si-mediated effects, although this finding varied between studies. While some reports support the notion that JA is linked to Si responses, others indicate that Si supplementation reduces JA production. In terms of phytopathogens, SA has not been found to be involved in Si-mediated defences. Improving our understanding of Si-mediated plant defence could be beneficial for sustainable agriculture under future climates. Full article
(This article belongs to the Special Issue Biochemical Defenses of Plants)
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15 pages, 1489 KiB  
Article
Insights on KP4 Killer Toxin-like Proteins of Fusarium Species in Interspecific Interactions
by Isabel Vicente, Giuseppe Quaratiello, Riccardo Baroncelli, Giovanni Vannacci and Sabrina Sarrocco
J. Fungi 2022, 8(9), 968; https://doi.org/10.3390/jof8090968 - 16 Sep 2022
Cited by 9 | Viewed by 3289
Abstract
KP4 killer toxins are secreted proteins that inhibit cell growth and induce cell death in target organisms. In Fusarium graminearum, KP4-like (KP4L) proteins contribute to fungal virulence in wheat seedling rot and are expressed during Fusarium head blight development. However, fungal KP4L [...] Read more.
KP4 killer toxins are secreted proteins that inhibit cell growth and induce cell death in target organisms. In Fusarium graminearum, KP4-like (KP4L) proteins contribute to fungal virulence in wheat seedling rot and are expressed during Fusarium head blight development. However, fungal KP4L proteins are also hypothesized to support fungal antagonism by permeabilizing cell walls of competing fungi to enable penetration of toxic compounds. Here, we report the differential expression patterns of F. graminearum KP4L genes (Fgkp4l-1, -2, -3 and -4) in a competitive interaction, using Trichoderma gamsii as the antagonist. The results from dual cultures indicate that Fgkp4l-3 and Fgkp4l-4 could participate in the recognition at the distance of the antagonist, while all Fgkp4l genes were highly activated in the pathogen during the physical interaction of both fungi. Only Fgkp4l-4 was up-regulated during the interaction with T. gamsii in wheat spikes. This suggests the KP4L proteins could participate in supporting F. graminearum interspecific interactions, even in living plant tissues. The distribution of KP4L orthologous within the genus Fusarium revealed they are more represented in species with broad host-plant range than in host-specific species. Phylogeny inferred provides evidence that KP4L genes evolved through gene duplications, gene loss and sequence diversification in the genus Fusarium. Full article
(This article belongs to the Special Issue Plant-Pathogenic Fusarium Species)
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13 pages, 1813 KiB  
Article
Surface Area of Wood Influences the Effects of Fungal Interspecific Interaction on Wood Decomposition—A Case Study Based on Pinus densiflora and Selected White Rot Fungi
by Yu Fukasawa and Koji Kaga
J. Fungi 2022, 8(5), 517; https://doi.org/10.3390/jof8050517 - 18 May 2022
Cited by 4 | Viewed by 2960
Abstract
Wood decomposer basidiomycetes are the major agents of lignocellulose decomposition in dead wood. As their interspecific interaction affects wood decomposition, difference in interaction area may alter the magnitude of the effects. This study examines the effects of wood surface area on decomposition by [...] Read more.
Wood decomposer basidiomycetes are the major agents of lignocellulose decomposition in dead wood. As their interspecific interaction affects wood decomposition, difference in interaction area may alter the magnitude of the effects. This study examines the effects of wood surface area on decomposition by interacting basidiomycetes using laboratory incubation experiments with pine sapwood as a model. Two types of pine wood blocks with equal volume but identical surface area were prepared for colonization by one of four white rot basidiomycete species. The colonized wood blocks were then placed on agar media already colonized by the same strain or one of the other species, simulating fungal monoculture and interspecific interactions on wood surface. Results demonstrated that the decay rate of wood was greater in wood with larger surface, and wood decay was accelerated by the interaction of two fungal species in wood with larger surface but not in wood with smaller surface. In contrast, lignin decomposition was influenced by the competitor in wood with smaller surface but not in wood with larger surface. These results suggest that the observed promotion of decay by fungal interspecific interaction might not be attributable to the resource partitioning between fungal species but to the accelerated carbon of competition cost compensation in this case. Full article
(This article belongs to the Special Issue Eco-Physiology of Wood Decay Fungi: Basics and Applications)
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21 pages, 3018 KiB  
Review
Hydrogenosome, Pairing Anaerobic Fungi and H2-Utilizing Microorganisms Based on Metabolic Ties to Facilitate Biomass Utilization
by Jing Ma, Pei Zhong, Yuqi Li, Zhanying Sun, Xiaoni Sun, Min Aung, Lizhuang Hao, Yanfen Cheng and Weiyun Zhu
J. Fungi 2022, 8(4), 338; https://doi.org/10.3390/jof8040338 - 24 Mar 2022
Cited by 11 | Viewed by 5119
Abstract
Anaerobic fungi, though low in abundance in rumen, play an important role in the degradation of forage for herbivores. When only anaerobic fungi exist in the fermentation system, the continuous accumulation of metabolites (e.g., hydrogen (H2) and formate) generated from their [...] Read more.
Anaerobic fungi, though low in abundance in rumen, play an important role in the degradation of forage for herbivores. When only anaerobic fungi exist in the fermentation system, the continuous accumulation of metabolites (e.g., hydrogen (H2) and formate) generated from their special metabolic organelles—the hydrogenosome—inhibits the enzymatic reactions in the hydrogenosome and reduces the activity of the anaerobic fungi. However, due to interspecific H2 transfer, H2 produced by the hydrogenosome can be used by other microorganisms to form valued bioproducts. This symbiotic interaction between anaerobic fungi and other microorganisms can be used to improve the nutritional value of animal feeds and produce value-added products that are normally in low concentrations in the fermentation system. Because of the important role in the generation and further utilization of H2, the study of the hydrogensome is increasingly becoming an important part of the development of anaerobic fungi as model organisms that can effectively improve the utilization value of roughage. Here, we summarize and discuss the classification and the process of biomass degradation of anaerobic fungi and the metabolism and function of anaerobic fungal hydrogensome, with a focus on the potential role of the hydrogensome in the efficient utilization of biomass. Full article
(This article belongs to the Section Fungi in Agriculture and Biotechnology)
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19 pages, 7789 KiB  
Article
Flooding Irrigation Weakens the Molecular Ecological Network Complexity of Soil Microbes during the Process of Dryland-to-Paddy Conversion
by Xiaoxiao Li, Qi Zhang, Jing Ma, Yongjun Yang, Yifei Wang and Chen Fu
Int. J. Environ. Res. Public Health 2020, 17(2), 561; https://doi.org/10.3390/ijerph17020561 - 15 Jan 2020
Cited by 23 | Viewed by 4126
Abstract
Irrigation has been applied on a large scale for the improvement of grain yield per hectare and production stability. However, the dryland-to-paddy conversion affects the ecological environment of areas of long-term dry farming, especially soil microorganisms. Little attention has been paid to the [...] Read more.
Irrigation has been applied on a large scale for the improvement of grain yield per hectare and production stability. However, the dryland-to-paddy conversion affects the ecological environment of areas of long-term dry farming, especially soil microorganisms. Little attention has been paid to the changes in microbial communities and the interactions between their populations in this process. Therefore, in this paper, the compositions and diversity of soil bacterial and fungal communities were explored through a combination of high-throughput sequencing technology and molecular ecological network methods using bacterial 16S rRNA and fungal ITS. The results showed that: (1) both the abundance and diversity of soil bacteria and fungi decreased in a short time, and the abundance of Actinobacteria, Firmicutes and Olpidiomycota varied greatly. (2) Compared to dry land, the modular structure of interaction networks and interspecific relationships of bacterial and fungal communities in paddy soil were simpler, and the network became more unstable. A cooperative relationship dominated in the molecular ecological network of bacteria, while a competitive relationship was dominant in the network of fungi. Actinobacteria and Firmicutes were the dominant bacterial species in dry land and paddy field, respectively. Ascomycota was dominant in the fungal communities of both dry land and paddy field. (3) The change in soil environmental factors, such as pH, electrical conductivity (EC), organic matter (OM) and available potassium (AK), directly affected the soil microbial community structure, showing a significant correlation (p < 0.05). These environmental factors also influenced the dominant microbial species. Microorganisms are the most important link in the carbon and nitrogen cycles of soil, and a large-scale dryland-to-paddy conversion may reduce the ecological stability of regional soil. Full article
(This article belongs to the Special Issue Microorganisms in the Environment)
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16 pages, 3103 KiB  
Article
The Conifer Root and Stem Rot Pathogen (Heterobasidion parviporum): Effectome Analysis and Roles in Interspecific Fungal Interactions
by Zilan Wen, Zhen Zeng, Fei Ren and Fred O. Asiegbu
Microorganisms 2019, 7(12), 658; https://doi.org/10.3390/microorganisms7120658 - 5 Dec 2019
Cited by 9 | Viewed by 4296
Abstract
Heterobasidion parviporum Niemelä & Korhonen is an economically important basidiomycete, causing root and stem rot disease of Norway spruce (Picea abies (L.) Karst) in Northern Europe. The H. parviporum genome encodes numerous small secreted proteins, which might be of importance for interacting [...] Read more.
Heterobasidion parviporum Niemelä & Korhonen is an economically important basidiomycete, causing root and stem rot disease of Norway spruce (Picea abies (L.) Karst) in Northern Europe. The H. parviporum genome encodes numerous small secreted proteins, which might be of importance for interacting with mycorrhiza symbionts, endophytes, and other saprotrophs. We hypothesized that small secreted proteins from H. parviporum (HpSSPs) are involved in interspecific fungal interaction. To identify HpSSP-coding genes potentially involved, we screened the H. parviporum effectome and compared their transcriptomic profiles during fungal development and in planta tree infection. We further conducted phylogenetic analysis, and identified a subset of hypothetical proteins with nonpredicted domain or unknown function as HpSSPs candidates for further characterization. The HpSSPs candidates were selected based on high-quality sequence, cysteine residue frequency, protein size, and in planta expression. We subsequently explored their roles during in vitro interaction in paired cultures of H. parviporum with ectomycorrhizal Cortinarius gentilis, endophytic Phialocephala sphaeroides, saprotrophs (Mycena sp., Phlebiopsis gigantea, and Phanerochaete chrysosporium), respectively. The transcriptomic profile revealed that a large proportion of effector candidates was either barely expressed or highly expressed under all growth conditions. In vitro dual-culture test showed that P. sphaeroides and C. gentilis were overgrown by H. parviporum. The barrage zone formation or no physical contact observed in paired cultures with the saprotrophs suggest they had either combative interaction or antibiosis effect with H. parviporum. Several HpSSPs individuals were up- or downregulated during the nonself interactions. The results of HpSSPs gene expression patterns provide additional insights into the diverse roles of SSPs in tree infection and interspecific fungal interactions. Full article
(This article belongs to the Special Issue Ecology and Genomics of Forest Fungi and Their Interactions)
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14 pages, 283 KiB  
Article
Environmental Factors and Interactions with Mycobiota of Grain and Grapes: Effects on Growth, Deoxynivalenol and Ochratoxin Production by Fusarium culmorum and Aspergillus carbonarius
by Naresh Magan, David Aldred, Russell Hope and David Mitchell
Toxins 2010, 2(3), 353-366; https://doi.org/10.3390/toxins2030353 - 18 Mar 2010
Cited by 50 | Viewed by 11588
Abstract
Mycotoxigenic fungi colonizing food matrices are inevitably competing with a wide range of other resident fungi. The outcomes of these interactions are influenced by the prevailing environmental conditions and the competing species. We have evaluated the competitiveness of F. culmorum and A. carbonarius [...] Read more.
Mycotoxigenic fungi colonizing food matrices are inevitably competing with a wide range of other resident fungi. The outcomes of these interactions are influenced by the prevailing environmental conditions and the competing species. We have evaluated the competitiveness of F. culmorum and A. carbonarius in the grain and grape food chain for their in vitro and in situ dominance in the presence of other fungi, and the effect that such interactions have on colony interactions, growth and deoxynivalenol (DON) and ochratoxin A (OTA) production. The Index of Dominance shows that changes in water activity (aw) and temperature affect the competitiveness of F. culmorum and A. carbonarius against up to nine different fungi. Growth of both mycotoxigenic species was sometimes inhibited by the presence of other competing fungi. For example, A. niger uniseriate and biseriate species decreased growth of A. carbonarius, while Aureobasidium pullulans and Cladosporium species stimulated growth. Similar changes were observed when F. graminearum was interacting with other grain fungi such as Alternaria alternata, Cladopsorium herbarum and Epicoccum nigrum. The impact on DON and OTA production was very different. For F. culmorum, the presence of other species often inhibited DON production over a range of environmental conditions. For A.carbonarius, on a grape–based medium, the presence of certain species resulted in a significant stimulation of OTA production. However, this was influenced by both temperature and aw level. This suggests that the final mycotoxin concentrations observed in food matrices may be due to complex interactions between species and the environmental history of the samples analyzed. Full article
(This article belongs to the Special Issue Advances in Mycotoxin Research)
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