Sign in to use this feature.

Years

Between: -

Subjects

remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline
remove_circle_outline

Journals

Article Types

Countries / Regions

Search Results (20)

Search Parameters:
Keywords = intermuscular bone

Order results
Result details
Results per page
Select all
Export citation of selected articles as:
14 pages, 1095 KiB  
Article
Bone Mineral Density and Intermuscular Fat Derived from Computed Tomography Images Using Artificial Intelligence Are Associated with Fracture Healing
by Yilin Tang, Xiaodong Wang, Ming Li and Liang Jin
Bioengineering 2025, 12(7), 785; https://doi.org/10.3390/bioengineering12070785 - 19 Jul 2025
Viewed by 520
Abstract
Objectives: To employ artificial intelligence (AI) to automatically measure bone mineral density (BMD) and intramuscular fat in computed tomography (CT) images of patients with fractures and explore the association between these parameters and fracture healing. Methods: This retrospective study included patients who underwent [...] Read more.
Objectives: To employ artificial intelligence (AI) to automatically measure bone mineral density (BMD) and intramuscular fat in computed tomography (CT) images of patients with fractures and explore the association between these parameters and fracture healing. Methods: This retrospective study included patients who underwent baseline CT scans for rib fracture diagnosis and follow-up CT scans for fracture healing assessment at our hospital between 2012 and 2023. The volumetric BMD of the entire first lumbar vertebra (L1) and the paraspinal intramuscular fat area (PIFA) at the midsection of L1 in the baseline CT were extracted using AI. The primary outcomes, including callus formation, volume increase, and poor healing, and logistic regression were used to analyze the relationships between BMD and PIFA with primary outcomes. Results: Overall, 297 fractures from 53 patients (24 males; mean age: 53.83 ± 10.86 years) were included in this study. In multivariate regression analysis, a 1 standard deviation (SD) decrease in BMD was identified as an independent prognostic factor for reduced callus formation (odds ratio [OR] = 0.70, 95% confidence interval [CI] = 0.50–0.97), diminished volume increase (OR = 0.70, 95% CI = 0.51–0.96), and elevated poor fracture healing at follow-up (OR = 2.08, 95% CI = 1.38–3.13). Similarly, a 1 SD increase in PIFA was an independent prognostic factor for reduced callus formation (OR = 0.24, 95% CI = 0.16–0.37), diminished volume increase (OR = 0.33, 95% CI = 0.23–0.49), and elevated poor fracture healing at follow-up (OR = 2.09, 95% CI = 1.50–2.93). Therefore, a model combining BMD, PIFA, and clinical characteristics significantly outperformed a model that included only clinical characteristics in predicting callus formation, volume increase, and poor fracture healing, with areas under the curve of 0.790, 0.749, and 0.701, respectively (all p < 0.001). Conclusions: BMD and PIFA can be used as early predictors of fracture healing outcomes and can help clinicians select appropriate interventions to prevent poor healing. Full article
Show Figures

Figure 1

13 pages, 933 KiB  
Article
Accumulation Patterns and Health Risk Assessment of Trace Elements in Intermuscular Bone-Free Crucian Carp
by Shizhan Tang, Na Li, Zhipeng Sun, Ting Yan, Tingting Zhang, Huan Xu, Zhongxiang Chen, Dongli Qin and Youyi Kuang
Toxics 2025, 13(7), 595; https://doi.org/10.3390/toxics13070595 - 16 Jul 2025
Viewed by 339
Abstract
This study investigated the accumulation characteristics and associated health risks of 11 trace elements (Al, Rb, Cr, Ni, Mo, Sr, Pb, Ba, Ag, As, and Ga) in four crucian carp varieties: gene-edited intermuscular bone-free crucian carp (Carassius auratus, WUCI) and its sibling [...] Read more.
This study investigated the accumulation characteristics and associated health risks of 11 trace elements (Al, Rb, Cr, Ni, Mo, Sr, Pb, Ba, Ag, As, and Ga) in four crucian carp varieties: gene-edited intermuscular bone-free crucian carp (Carassius auratus, WUCI) and its sibling wild-type (Carassius auratus, WT), Fangzheng silver crucian carp (Carassius gibelio var Fangzheng, FZYJ), and Songpu silver crucian carp (Carassius gibelio var Songpu, SPYJ). Results showed that Al and Rb were the most abundant elements across all groups. WUCI exhibited distinct accumulation patterns, including significantly higher hepatic Mo concentrations (0.265 ± 0.032 mg/kg) and muscle/liver Rb levels (muscle: 8.74 ± 1.21 mg/kg; liver: 12.56 ± 2.05 mg/kg) compared to other varieties (p < 0.05), which supports the hypothesis of genotype-specific differences in heavy metal accumulation. Correlation analysis revealed that WUCI exhibited similar elemental interactions with WT and SPYJ (e.g., Al-Ni positive correlation, |rs| ≥ 0.8), while SPYJ displayed distinct patterns with fifteen negative correlations compared to three to five in others varieties, suggesting a potential alteration in elemental homeostasis. Pollution index (Pi) assessments indicated mild contamination for Pb in SPYJ liver (Pi = 0.265) and Cr/As in WUCI muscle (Pi = 0.247/0.218). Despite these values, all hazard indices remained below the established safety thresholds (THQ < 0.1, HI < 0.25, TCR < 10−6), reinforcing the overall safety of the tested fish. Notably, muscle As levels (0.86 ± 0.15 mg/kg) exceeded hepatic concentrations (0.52 ± 0.09 mg/kg), potentially due to differential detoxification mechanisms. These findings demonstrate the food safety of all tested varieties, while highlighting genotype-specific metabolic adaptations, providing critical data for evaluating gene edited aquatic products. Full article
(This article belongs to the Special Issue Effects of Toxic Contaminants on Fish Behaviours)
Show Figures

Graphical abstract

17 pages, 2592 KiB  
Article
Comprehensive Evaluation of Growth Performance, Hematological Parameters, Antioxidant Capacity, Innate Immunity, and Disease Resistance in Crucian Carp (Carassius auratus) Lacking Intermuscular Bones
by Ran Zhao, Jianqiang Zhu, Shaowu Li, Zhipeng Sun, Tingting Zhang, Jing Wang, Xianhu Zheng, Youyi Kuang and Di Wang
Antioxidants 2025, 14(4), 443; https://doi.org/10.3390/antiox14040443 - 8 Apr 2025
Viewed by 724
Abstract
The presence of intermuscular bones severely affects the edibility and value-added processing of crucian carp (Carassius auratus), becoming a constraint to the high-quality development of its industry. Our previous study identified bmp6 as the key osteogenic regulator and successfully developed a [...] Read more.
The presence of intermuscular bones severely affects the edibility and value-added processing of crucian carp (Carassius auratus), becoming a constraint to the high-quality development of its industry. Our previous study identified bmp6 as the key osteogenic regulator and successfully developed a new crucian carp strain lacking intermuscular bones (WUCI) using CRISPR/Cas9 technology. To accelerate its industrialization, we comprehensively assessed WUCI’s growth performance, hematological parameters, antioxidant capacity, innate immunity, and disease resistance. The results demonstrated that the WUCI exhibited significant growth performance compared to the wild-type crucian carp (WT), with significantly higher weight gain (WG) and specific growth rate (SGR) (p < 0.05) from one month to four months of age. The α-amylase (α-AL) activity of the liver and intestines of WUCI was significantly higher than that of WT. WUCI also displayed enhanced intestinal antioxidant capacity, with superoxide dismutase (SOD) and catalase (CAT) activities significantly higher than those in WT (p < 0.05). The malondialdehyde (MDA) content in the spleen of WUCI was significantly lower than that of WT (p < 0.05); no differences were observed in the liver and intestines (p > 0.05). Additionally, hepatic acid phosphatase (ACP) activity in WUCI was significantly higher than that in WT (p < 0.05). In contrast, splenic ACP and intestinal alkaline phosphatase (ALP) activities were significantly lower than those in WT (p < 0.05). Notably, the iron concentration in the serum was significantly higher in WUCI than in the WT (p < 0.05). Meanwhile, WUCI exhibited significantly lower a expression of hepcidin, TF, and TFR1 mRNA in the liver compared to WT (p < 0.05), while FPN mRNA expression was significantly higher (p < 0.05). Routine blood tests revealed significantly lower WBC in WUCI compared to that of WT (p < 0.05). Following an Aeromonas hydrophila challenge, WT demonstrated a rapid transcriptional induction of pro-inflammatory cytokines (TNF-α, IL-1β, IL-6) and immunoregulatory mediators (IL-10, TGF-β), with mRNA levels reaching maximal expression at 24 h post-infection (hpi) followed by progressive attenuation. In contrast, WUCI exhibited a delayed immune activation profile characterized by the peak expression of TNF-α, IL-1β, IL-6, and IL-10 transcripts after 72 hpi, with the maximum transcript abundance remaining lower than corresponding peak values observed in WT at 24 hpi. Finally, we observed that the mortality rate of WUCI was slightly higher post A. hydrophila infection when compared to WT, but was not significant (p > 0.05). In conclusion, this study provides a comprehensive evaluation of WUCI, revealing its distinct growth advantages, physiological adaptations, and immune function, presenting its potential for aquaculture breeding applications. Full article
(This article belongs to the Special Issue Antioxidant Response in Aquatic Animals)
Show Figures

Figure 1

14 pages, 230 KiB  
Article
Bakery Waste Inclusion in the Diet of Growing Black Goat Kids: Evaluation of Performance and Health Aspects
by Belal S. Obeidat
Animals 2025, 15(3), 383; https://doi.org/10.3390/ani15030383 - 29 Jan 2025
Cited by 2 | Viewed by 820
Abstract
The influence of bakery waste (BAWA) in the diet of black goat kids on nutrient intake, health, growth potential, and carcass features was assessed. Three treatment diets, consisting of 0 BAWA (CON), 50 g/kg BAWA (BAWA50), and 100 BAWA (BAWA100) of dietary dry [...] Read more.
The influence of bakery waste (BAWA) in the diet of black goat kids on nutrient intake, health, growth potential, and carcass features was assessed. Three treatment diets, consisting of 0 BAWA (CON), 50 g/kg BAWA (BAWA50), and 100 BAWA (BAWA100) of dietary dry matter (DM), were administered to 27 male kids (initial body weight = 17.43 ± kg; age = 105 ± 3.5 days) at random (9/treatment). Bakery waste was included in diets BAWA50 and BAWA100, replacing some of the barley grain. The study lasted for 70 days (7 days used for adaptation and 63 days used for data collection). Kids in the BAWA100 group consumed considerably more (p < 0.01) DM, crude protein (CP), and metabolizable energy than those in the BAWA50 and CON groups. However, intakes of neutral detergent fiber (NDF), acid detergent fiber (ADF), and ether extract (EE) were similar (p ≥ 0.08) among the treatment diets. The kids’ initial and final body weights, total growth, and average daily weight were not substantially impacted (p ≥ 0.13) by the addition of BAWA. All diets had similar feed efficiency when it came to converting feed into body weight increases (p ≥ 0.11). Nevertheless, the BAWA diet yielded a considerably lower cost gain (p = 0.04) than the CON diet. The three treatment groups had no differences (p ≥ 0.15) in DM, ADF, NDF, and EE digestibility. However, compared to the CON group, the digestibility of CP tended to improve (p = 0.07) in the BAWA100 and BAWA50 groups. The three experimental groups’ nitrogen (N) intakes did not differ significantly from one another (p > 0.33). Additionally, the three diets’ N retention percentage and grams/d were equivalent (p > 0.33). Several carcass metrics, such as dressing percentage, hot and cold carcass weights, fasting live weight, and non-carcass components, were not significantly affected (p > 0.23) by the addition of BAWA. Additionally, no differences in carcass cut weights were found. The inclusion of BAWA100 and BAWA50 increased loin cut weight (p = 0.043) and total lean muscle weight (p = 0.001) compared to the CON group. Other components, such as intermuscular fat, subcutaneous fat, total fat, total bone, meat-to-bone ratio, and meat-to-fat ratio, were similar among the three diet groups. Concerning carcass linear dimension measurements, only rib fat depth was greater (p = 0.008) in kids fed the BAWA100 diet compared to the BAWA50 and CON diets. No significant variation was observed among the treatments concerning various physicochemical properties of the longissimus dorsi muscle in the black goat kids. All measured serum metabolites and hematological parameters were not affected by the incorporation of BAWA into the diet. In summary, the inclusion of 50 and 100 g/kg BAWA in the diet had comparable effects on the black goat kids’ feed intake, digestibility, growth performance, carcass characteristics, meat quality, and overall health. Importantly, feed costs can be reduced by using up to 100 g/kg of BAWA on a DM basis. Full article
(This article belongs to the Section Small Ruminants)
14 pages, 9625 KiB  
Article
Mutation of Genes Associated with Body Color, Growth, Intermuscular Bone, and Sex Differentiation in Onychostoma macrolepis Using CRISPR/Cas9
by Tian Gao, Feilong Wang, Qihui Wu, Lingyao Gan, Canbiao Jin, Li Ma, Deshou Wang and Lina Sun
Fishes 2025, 10(2), 40; https://doi.org/10.3390/fishes10020040 - 22 Jan 2025
Viewed by 1171
Abstract
Onychostoma macrolepis is not only a protected Cyprinid species in the wild but also an emerging commercial aquaculture fish in China. The objective of this research was to genetically modify the genes associated with commercial traits by CRISPR/Cas9 for the protection and utilization [...] Read more.
Onychostoma macrolepis is not only a protected Cyprinid species in the wild but also an emerging commercial aquaculture fish in China. The objective of this research was to genetically modify the genes associated with commercial traits by CRISPR/Cas9 for the protection and utilization of the germplasm resources of O. macrolepis. To that end, one-cell stage embryos were obtained via hormone-induced ovulation and artificial insemination in O. macrolepis. Eight genes related to body color, growth, intermuscular bone, and sex differentiation were mutated in O. macrolepis using the CRISPR/Cas9 system by microinjection of gRNA/Cas9 mRNA. The optimal dose of gRNA/Cas9 mRNA was determined by injection of different concentrations of tyr (tyrosinase)-gRNA/Cas9 and examination of the mutation rate and hatching rate of embryos. Indels were detected by T7 endonuclease I digestion and Sanger sequencing. F0 mutants with high mutation rates were selected for phenotype analyses. Disruption of body color gene tyr, mpv17 (mitochondrial inner membrane protein MPV17), and csf1ra (colony-stimulating factor 1 receptor, a) resulted in obvious phenotype with decreased or even absence of melanophores, iridophores, and xanthophores, respectively. Mutation of mstnb (myostatin b) led to improved growth performance. Mutation of mc4r (melanocortin 4 receptor) led to no obvious phenotype. Mutation of runx2b (RUNX family transcription factor 2b) and bmp6 (bone morphogenetic protein 6) resulted in decreased or absence of intermuscular bones, as revealed by alizarin red S staining. Mutation of cyp19a1a (cytochrome P450, family 19, subfamily A, polypeptide 1a) resulted in ovarian degeneration as revealed by gonadal histological examination. Therefore, this study successfully obtained mutants with obvious phenotypes of genes associated with body color, growth, intermuscular bone, and sex differentiation by CRISPR/Cas9 in O. macrolepis. Full article
Show Figures

Figure 1

17 pages, 2954 KiB  
Article
Study on the Carcass Traits, Meat Quality, and Nutritional Attributes of Six Kinds of Jiangxi Local Breeds Cattle
by Yang Zhang, Yuting Wei, Guwei Lu, Youxiang Yang, Yuting Pan, Chuanpei Fu, Fazhan Tian, Qinghua Qiu, Xianghui Zhao, Yanjiao Li, Lingli Chen, Wenjun Wang and Kehui Ouyang
Animals 2024, 14(21), 3053; https://doi.org/10.3390/ani14213053 - 22 Oct 2024
Viewed by 1138
Abstract
The purpose of this study is to explore the carcass traits, meat quality, and nutritional attributes of local yellow cattle (Guangfeng, Ji’an, and Jinjiang) and buffalo (Poyanghu, Xiajiang, and Xinfeng mountain) in Jiangxi Province, and compare the differences among different breeds. The results [...] Read more.
The purpose of this study is to explore the carcass traits, meat quality, and nutritional attributes of local yellow cattle (Guangfeng, Ji’an, and Jinjiang) and buffalo (Poyanghu, Xiajiang, and Xinfeng mountain) in Jiangxi Province, and compare the differences among different breeds. The results showed that the dressing percentage, net meat percentage, and meat–bone ratio of Jinjiang cattle were highest, and that Jinjiang cattle had the best meat production performance. Regarding meat quality, the pH24h value of all breeds was at normal level, and no dark-cutting beef was produced. Poyanghu buffalo and Xinfeng mountain buffalo had higher redness (a*) values, and Guangfeng cattle had the best water retention and tenderness. The intermuscular fat of yellow cattle breeds was higher than that of buffalo breeds; Poyanghu buffalo had the highest crude protein content. The composition of amino acids and fatty acids was different among breeds, and the composition of Jiangxi breeds was healthy. The muscle fibers of buffalo breeds are generally smaller and denser than those of yellow cattle breeds. The MyHC-Ⅰ, MyHC-Ⅱa, and MyHC-Ⅱx were the main types of muscle fibers of Jiangxi local breeds, and the proportion varied with different breeds. This work elucidated the carcass characteristics, meat quality, and nutritional attributes of Jiangxi breed cattle to provide a theoretical basis for optimizing the development of beef cattle industry. Full article
(This article belongs to the Section Animal Products)
Show Figures

Figure 1

15 pages, 5773 KiB  
Article
Using Image Analysis Technique for Predicting Light Lamb Carcass Composition
by João J. Afonso, Mariana Almeida, Ana Catharina Batista, Cristina Guedes, Alfredo Teixeira, Severiano Silva and Virgínia Santos
Animals 2024, 14(11), 1593; https://doi.org/10.3390/ani14111593 - 28 May 2024
Viewed by 1910
Abstract
Over the years, numerous techniques have been explored to assess the composition and quality of sheep carcasses. This study focuses on the utilization of video image analysis (VIA) to evaluate the composition of light lamb carcasses (4.52 ± 1.34 kg, mean cold carcass [...] Read more.
Over the years, numerous techniques have been explored to assess the composition and quality of sheep carcasses. This study focuses on the utilization of video image analysis (VIA) to evaluate the composition of light lamb carcasses (4.52 ± 1.34 kg, mean cold carcass weight ± SD). Photographic images capturing the lateral and dorsal sides of fifty-five light lamb carcasses were subjected to analysis. A comprehensive set of measurements was recorded, encompassing dimensions such as lengths, widths, angles, areas, and perimeters, totaling 21 measurements for the lateral view images and 29 for the dorsal view images. K-Folds stepwise multiple regression analyses were employed to construct prediction models for carcass tissue weights (including muscle, subcutaneous fat, intermuscular fat, and bone) and their respective percentages. The most effective prediction equations were established using data from cold carcass weight (CCW) and measurements from both dorsal and lateral views. These models accounted for a substantial portion of the observed variation in the weights of all carcass tissues (with K-fold-R2 ranging from 0.83 to 0.98). In terms of carcass tissue percentages, although the degree of variation explained was slightly lower (with K-fold-R2 ranging from 0.41 to 0.78), the VIA measurements remained integral to the predictive models. These findings underscore the efficacy of VIA as an objective tool for assessing the composition of light lamb carcasses, which are carcasses weighing ≈ 4–8 kg. Full article
(This article belongs to the Collection Carcass Composition and Meat Quality of Small Ruminants)
Show Figures

Figure 1

15 pages, 3448 KiB  
Article
Transcriptome Analysis Elucidates the Potential Key Genes Involved in Rib Development in bmp6-Deficient Silver Carp (Hypophthalmichthys molitrix)
by Xiaohui Li, Chunyan Zhang, Cui Feng, Zewen Zhang, Nannan Feng, Hang Sha, Xiangzhong Luo, Guiwei Zou and Hongwei Liang
Animals 2024, 14(10), 1451; https://doi.org/10.3390/ani14101451 - 13 May 2024
Cited by 5 | Viewed by 1881
Abstract
Bone morphogenetic protein 6 (BMP-6) is a constituent of the TGF-β superfamily, known for its ability to stimulate bone and cartilage formation. The investigation of bmp6’s involvement in the formation of intermuscular bones in fish has garnered significant attention in recent years. [...] Read more.
Bone morphogenetic protein 6 (BMP-6) is a constituent of the TGF-β superfamily, known for its ability to stimulate bone and cartilage formation. The investigation of bmp6’s involvement in the formation of intermuscular bones in fish has garnered significant attention in recent years. The rib cage is an important skeletal structure that plays a protective function for internal organs in fish. However, there has been limited research conducted on the effects of the bmp6 gene on rib development. Silver carp is one of four major fish in China, favoured for its affordability and tender muscle. Nevertheless, the presence of numerous intermuscular bones in silver carp significantly hinders the advancement of its palatability and suitability for processing. This study showcases the effective utilisation of CRISPR/Cas9 technology for the purpose of disrupting the bmp6 gene in silver carp, leading to the creation of chimeras in the P0 generation, marking the first instance of such an achievement. The chimeras exhibited complete viability, normal appearance, and partial intermuscular bones loss, with approximately 30% of them displaying rib bifurcation or bending. Subsequently, a transcriptome analysis on ribs of P0 chimeras and wild-type silver carp was conducted, leading to the identification of 934 genes exhibiting differential expression, of which 483 were found to be up-regulated and 451 were found to be down-regulated. The results of the KEGG analysis revealed that the “NF-kappa B signalling pathway”, “Hippo signalling pathway”, “osteoclast differentiation”, and “haematopoietic cell lineage” exhibited enrichment and displayed a significant correlation with bone development. The up-regulated genes such as tnfα, fos, and ctgf in pathways may facilitate the proliferation and differentiation of osteoclasts, whereas the down-regulation of genes such as tgfb2 and tgfbr1 in pathways may hinder the formation and specialisation of osteoblasts, ultimately resulting in rib abnormalities. This study presents novel findings on the impact of bmp6 gene deletion on the rib development of silver carp, while simultaneously investigating the previously unexplored molecular mechanisms underlying rib defects in fish. Full article
(This article belongs to the Special Issue Genomic and Transcriptomic Studies in Aquaculture)
Show Figures

Figure 1

13 pages, 3111 KiB  
Article
Fish Size Correlates to Size and Morphology of Intermuscular Bones in Tambaqui Colossoma macropomum as Shown by Dissection and X-ray Imaging Methods
by Naislan F. A. Oliveira, Lucas S. Torati, Luciana A. Borin-Carvalho, Leandro K. F. de Lima, Velmurugu Puvanendran, Thaís H. Demiciano, José J. T. da Silva, Aurisan da S. Barroso and Eduardo S. Varela
Fishes 2023, 8(4), 180; https://doi.org/10.3390/fishes8040180 - 28 Mar 2023
Cited by 1 | Viewed by 3474
Abstract
One of the main issues in the processing sector of the tambaqui Colossoma macropomum is the removal and/or fragmentation of intermuscular bones (IBs), which negatively impacts its production chain. In this sense, we quantitatively examined the IB variation in farmed tambaqui (n = [...] Read more.
One of the main issues in the processing sector of the tambaqui Colossoma macropomum is the removal and/or fragmentation of intermuscular bones (IBs), which negatively impacts its production chain. In this sense, we quantitatively examined the IB variation in farmed tambaqui (n = 127) by comparing the direct anatomical dissection with the high-resolution X-ray imaging method. The number of IBs from the anatomical dissection on the left side of the fish (27.3 ± 5.70 bones) was comparable to that of X-ray analysis (26.9 ± 6.03 bones) (p > 0.05). In addition, 76% of deviation in IB number between the two studied methods was one to three, indicating both methods are equally efficient for identifying and quantifying IBs. We found a strong positive correlation (R = 0.8, p < 0.001) between the X-ray and the dissection methods. Our predictive models indicated that more than 50% of variation in IB length can be explained by growth parameters. Our results demonstrated that the X-ray method can provide accurate phenotypic data (in vivo) for IB counting and length measurements by extrapolating from the standard length, body weight and trunk over axis area of tambaqui. Full article
(This article belongs to the Special Issue Morphometrics in Fisheries and Aquaculture)
Show Figures

Graphical abstract

11 pages, 1625 KiB  
Article
CT-Derived Body Composition Is a Predictor of Survival after Esophagectomy
by Kartik Iyer, Cameron A. Beeche, Naciye S. Gezer, Joseph K. Leader, Shangsi Ren, Rajeev Dhupar and Jiantao Pu
J. Clin. Med. 2023, 12(6), 2106; https://doi.org/10.3390/jcm12062106 - 8 Mar 2023
Cited by 10 | Viewed by 2581
Abstract
Background: Body composition can be accurately quantified based on computed tomography (CT) and typically reflects an individual’s overall health status. However, there is a dearth of research examining the relationship between body composition and survival following esophagectomy. Methods: We created a cohort consisting [...] Read more.
Background: Body composition can be accurately quantified based on computed tomography (CT) and typically reflects an individual’s overall health status. However, there is a dearth of research examining the relationship between body composition and survival following esophagectomy. Methods: We created a cohort consisting of 183 patients who underwent esophagectomy for esophageal cancer without neoadjuvant therapy. The cohort included preoperative PET-CT scans, along with pathologic and clinical data, which were collected prospectively. Radiomic, tumor, PET, and body composition features were automatically extracted from the images. Cox regression models were utilized to identify variables associated with survival. Logistic regression and machine learning models were developed to predict one-, three-, and five-year survival rates. Model performance was evaluated based on the area under the receiver operating characteristics curve (ROC/AUC). To test for the statistical significance of the impact of body composition on survival, body composition features were excluded for the best-performing models, and the DeLong test was used. Results: The one-year survival model contained 10 variables, including three body composition variables (bone mass, bone density, and visceral adipose tissue (VAT) density), and demonstrated an AUC of 0.817 (95% CI: 0.738–0.897). The three-year survival model incorporated 14 variables, including three body composition variables (intermuscular adipose tissue (IMAT) volume, IMAT mass, and bone mass), with an AUC of 0.693 (95% CI: 0.594–0.792). For the five-year survival model, 10 variables were included, of which two were body composition variables (intramuscular adipose tissue (IMAT) volume and visceral adipose tissue (VAT) mass), with an AUC of 0.861 (95% CI: 0.783–0.938). The one- and five-year survival models exhibited significantly inferior performance when body composition features were not incorporated. Conclusions: Body composition features derived from preoperative CT scans should be considered when predicting survival following esophagectomy. Full article
Show Figures

Figure 1

14 pages, 2138 KiB  
Article
Profiling the Spatial Expression Pattern and ceRNA Network of lncRNA, miRNA, and mRNA Associated with the Development of Intermuscular Bones in Zebrafish
by Weidong Ye, Mijuan Shi, Keyi Ren, Yuhang Liu, You Duan, Yingyin Cheng, Wanting Zhang and Xiao-Qin Xia
Biology 2023, 12(1), 75; https://doi.org/10.3390/biology12010075 - 31 Dec 2022
Cited by 4 | Viewed by 2376
Abstract
Intermuscular bones (IBs) are small spicule-like bones in the muscular septum of fish, which affect their edible and economic value. The molecular mechanism of IB development is still uncertain. Numerous studies have shown that the ceRNA network, which is composed of mRNA, lncRNA, [...] Read more.
Intermuscular bones (IBs) are small spicule-like bones in the muscular septum of fish, which affect their edible and economic value. The molecular mechanism of IB development is still uncertain. Numerous studies have shown that the ceRNA network, which is composed of mRNA, lncRNA, and miRNA, plays an important regulatory role in bone development. In this study, we compared the mRNA, lncRNA, and miRNA expression profiles in different IB development segments of zebrafish. The development of IBs includes two main processes, which are formation and growth. A series of genes implicated in the formation and growth of IBs were identified through gene differential expression analysis and expression pattern analysis. Functional enrichment analysis showed that the functions of genes implicated in the regulation of the formation and growth of IBs were quite different. Ribosome and oxidative phosphorylation signaling pathways were significantly enriched during the formation of IBs, suggesting that many proteins are required to form IBs. Several pathways known to be associated with bone development have been shown to play an important role in the growth of IBs, including calcium, ECM-receptor interaction, Wnt, TGF-β, and hedgehog signaling pathways. According to the targeting relationship and expression correlation of mRNA, lncRNA, and miRNA, the ceRNA networks associated with the growth of IBs were constructed, which comprised 33 mRNAs, 9 lncRNAs, and 7 miRNAs. This study provides new insight into the molecular mechanism of the development of IBs. Full article
(This article belongs to the Special Issue Omics Technologies Applied to Aquaculture Research)
Show Figures

Figure 1

17 pages, 357 KiB  
Article
Terminal Crossbreeding of Murciano-Granadina Goats with Boer Bucks: Characteristics of the Carcass and the Meat
by Ión Pérez-Baena, Cristòfol Peris, Nemesio Fernández, Jorge Franch-Dasí, Cristhian Sagbay, Julio Cesar Terán-Piña and Martín Rodríguez
Animals 2022, 12(19), 2548; https://doi.org/10.3390/ani12192548 - 23 Sep 2022
Cited by 2 | Viewed by 2374
Abstract
After verifying productive improvements from the crossbreeding (MB) of Boer males with females of the Murciano-Granadina (MG) breed, the aim of this work was to determine its consequences on the carcass and meat characteristics of suckling kids (9 kg of weight at slaughter) [...] Read more.
After verifying productive improvements from the crossbreeding (MB) of Boer males with females of the Murciano-Granadina (MG) breed, the aim of this work was to determine its consequences on the carcass and meat characteristics of suckling kids (9 kg of weight at slaughter) of both sexes. A total of 94 kids (25 purebred MG males, 19 purebred MG females, 25 crossed MB males and 25 crossed MB females) were used. It was found that MB kids reached slaughter weight at a younger age (44 ± 1 vs. 63 ± 1 days, p < 0.001). For carcass yield, the interaction genotype x sex was observed, where MB females presented a higher value (51.71 ± 0.34%) than the rest of the animals (MB males 50.53 ± 0.34, p < 0.05; MG males 50.60 ± 0.34, p < 0.05; MG females 49.62 ± 0.39, p < 0.001). MB kids had greater leg compactness, (36.28 ± 0.27 vs. 34.71 ± 0.29 g/cm, p < 0.001), slightly improved expensive carcass cuts (75.93 ± 0.31 vs. 74.77 ± 0.34%, p = 0.014) and higher muscle/bone (2.93 ± 0.03 vs. 2.76 ± 0.03, p < 0.001) and meat/bone ratios (3.56 ± 0.04 vs. 3.36 ± 0.04, p < 0.001) than MG kids. They also showed a somewhat more intense red colour (8.57 ± 0.25 vs. 7.74 ± 0.27, p = 0.027), higher colour saturation (9.06 ± 0.24 vs. 8.20 ± 0.26, p = 0.016) and less meat firmness (1.95 ± 0.08 vs. 2.23 ± 0.081 kg/cm2, p = 0.021). On the other hand, males had a slightly improved proportion of expensive cuts (75.98 ± 0.31 vs. 74.73 ± 0.34, p = 0.008), but their carcass contained a higher proportion of bone (22.16 ± 0.21 vs. 21.17 ± 0.17%; p < 0.001), a lower proportion of intermuscular fat (9.54 ± 0.24 vs. 10.93 ± 0.24, p < 0.001), a higher muscle/fat ratio (5.01 ± 0.10 vs. 4.41 ± 0.10, p < 0.001) and lower muscle/bone (2.80 ± 0.03 vs. 2.89 ± 0.03%, p = 0.016) and meat/bone ratios (3.36 ± 0.04 vs. 3.56 ± 0.04%, p < 0.001) than females. There were no sensory differences in any case. It is concluded that this crossbreeding strategy also improves the carcass and meat characteristics, making it a valid alternative to improve the productive results of MG dairy goat herds. Full article
(This article belongs to the Section Small Ruminants)
16 pages, 1018 KiB  
Article
Bulked Segregant Analysis and Association Analysis Identified the Polymorphisms Related to the Intermuscular Bones in Common Carp (Cyprinus carpio)
by Ming-Shu Cui, Ran Zhao, Qi Wang, Yan Zhang, Qing-Song Li, Mei-Di Huang Yang, Xiao-Qing Sun and Jiong-Tang Li
Biology 2022, 11(3), 477; https://doi.org/10.3390/biology11030477 - 21 Mar 2022
Cited by 6 | Viewed by 3132
Abstract
The allotetraploid common carp is one of the most important freshwater food fish. However, the IBs found in allotetraploid common carp increase the difficulty in fish meat processing and consumption. Although candidate genes associated with the total IB number have been identified, the [...] Read more.
The allotetraploid common carp is one of the most important freshwater food fish. However, the IBs found in allotetraploid common carp increase the difficulty in fish meat processing and consumption. Although candidate genes associated with the total IB number have been identified, the SNPs associated with the numbers of the total IBs and different forms of IBs have not yet been identified, hindering the breeding of IB-reduced common carp. Herein, the numbers of different types of IBs in three common carp strains were measured. Using whole-genome resequencing and bulked segregant analysis in three pairs of IB-more and IB-less groups, we identified the consensus nonsynonymous SNPs in three strains of common carp. Screening the flanking regions of these SNPs led to the detection of other SNPs. Association study detected 21 SNPs significantly associated with the number of total IBs, epineural-IBs, and ten detailed types of IBs. We observed the joint effects of multiple SNPs on each associated IB number with an improved explained percentage of phenotypic variation. The resulting dataset provides a resource to understand the molecular mechanisms of IB development in different common carp strains. These SNPs are potential markers for future selection to generate IB-reduced common carp. Full article
(This article belongs to the Special Issue Transcriptome and Genome Analyses Applied to Aquaculture Research)
Show Figures

Figure 1

11 pages, 4109 KiB  
Article
Diluted Acetic Acid Softened Intermuscular Bones from Silver Carp (Hypophthalmichthys molitrix) by Dissolving Hydroxyapatite and Collagen
by Yueyue Liu, Huiman Jiang, Longteng Zhang, Yuqing Tan, Yongkang Luo and Hui Hong
Foods 2022, 11(1), 1; https://doi.org/10.3390/foods11010001 - 21 Dec 2021
Cited by 32 | Viewed by 4445
Abstract
Intermuscular bones (IBs) pose physical hazards that threaten consumer health and food safety. This study aimed to investigate the mechanism of softening IBs from silver carp with diluted acetic acid. IBs (separated from muscle) and fillets (without removing IBs) were treated with diluted [...] Read more.
Intermuscular bones (IBs) pose physical hazards that threaten consumer health and food safety. This study aimed to investigate the mechanism of softening IBs from silver carp with diluted acetic acid. IBs (separated from muscle) and fillets (without removing IBs) were treated with diluted acetic acid. Analyses of sensory attributes and the hardness of treated IBs indicated that diluted acetic acid (<10 mmol/L) could soften IBs effectively. Additionally, 0.5 mmol/L acetic acid softened IBs within fillets without significantly affecting the texture and flavor of fillets. Analyses of microstructure, minerals (calcium and phosphorus) and collagen content, and the Fourier transform infrared (FTIR) spectra of IBs indicated that acetic acid broke connections (formed by collagen that shared hydroxyl groups) between collagen molecules, and between collagen and hydroxyapatite (HAP), thus inducing the dissolution of collagen and HAP. The dissolution of HAP contributed more to IBs softening than collagen. Full article
(This article belongs to the Special Issue Advanced Technologies in Quality Improvement of Animal Production)
Show Figures

Figure 1

14 pages, 5178 KiB  
Article
Comparison of Myosepta Development and Transcriptome Profiling between Blunt Snout Bream with and Tilapia without Intermuscular Bones
by Jia-Jia Zhou, Yong-Jie Chang, Yu-Long Chen, Xu-Dong Wang, Qing Liao, Rui-Hui Shi and Ze-Xia Gao
Biology 2021, 10(12), 1311; https://doi.org/10.3390/biology10121311 - 10 Dec 2021
Cited by 9 | Viewed by 3842
Abstract
Intermuscular bones (IBs) are small spicule-like bones located in the myosepta of basal teleosts, which negatively affect the edibleness and economic value of fish. Blunt snout bream (Megalobrama amblycephala, with epineural and epipleural IBs) and tilapia (Oreochromis niloticus, without [...] Read more.
Intermuscular bones (IBs) are small spicule-like bones located in the myosepta of basal teleosts, which negatively affect the edibleness and economic value of fish. Blunt snout bream (Megalobrama amblycephala, with epineural and epipleural IBs) and tilapia (Oreochromis niloticus, without epineural and epipleural IBs) are two major aquaculture species and ideal models for studying the formation mechanisms of fish IBs. Here, we compared myosepta development between M. amblycephala and O. niloticus, based on histological analysis, transcriptome profiling, and expression analysis of bone-related genes. The histological results showed that dye condensation began to appear in the myosepta 20 days post hatching (dph) in M. amblycephala, and IBs could be clearly observed 50 dph in the myosepta, based on different staining methods. However, in O. niloticus, dye condensation was not observed in the myosepta from 10 to 60 dph. Differentially expressed genes (DEGs) at different developmental stages were screened by comparing the transcriptomes of M. amblycephala and O. niloticus, and KEGG analysis demonstrated that these DEGs were enriched in many bone-related pathways, such as focal adhesion, calcium, and Wnt signaling pathways. Quantitative PCR was performed to further compare the expression levels of some bone-related genes (scxa, scxb, runx2a, runx2b, bgp, sp7, col1a2, entpd5a, entpd5b, phex, alpl, and fgf23). All the tested genes (except for alpl) exhibited higher expression levels in M. amblycephala than in O. niloticus. A comparison of the dorsal and abdominal muscle tissues between the two species also revealed significant expression differences for most of the tested genes. The results suggest that scxa, scxb, runx2a, runx2b, entpd5a, col1a2, and bgp may play important roles in IB development. Our findings provide some insights into the molecular mechanisms of IB formation, as well as clues for further functional analysis of the identified genes to better understand the development of IBs. Full article
(This article belongs to the Special Issue Transcriptome and Genome Analyses Applied to Aquaculture Research)
Show Figures

Figure 1

Back to TopTop