Search Results (15)

The imbalance in soil microcosm systems caused by the long-term monoculture of ginseng is the main cause of continuous cropping disorder in ginseng, an important factor limiting the development of the ginseng industry. The ecological intercropping pattern of medicinal plants is a planting technology that achieves efficient, high-quality and sustainable production of Chinese medicinal materials by increasing the diversity of farmland ecosystems and improving the stability of soil micro-ecosystems, thereby alleviating the continuous cropping disorder of medicinal plants. However, there remains a lack of research on the ecological intercropping cultivation of ginseng. We constructed a Panax ginseng/Arisaema amurense intercropping model to explore the changes in soil nutrients, enzyme activities, soil microbial communities and ginseng quality. The findings of this study demonstrated that intercropping could decelerate the acidification process of soils and effectively increased 37.02% of soil organic matter, 32.39% of total nitrogen, 5.18% of total potassium and 9.03% of available phosphorus contents in ginseng inter-root soil compared with monocropping. The results revealed that intercropping increased the soil urease and soil acid phosphatase activities while reducing the soil sucrase activity in the inter-root soil. Additionally, intercropping elevated the α-diversity of the inter-root soil bacterial community and diminished the composition and abundance of the fungal community. The intercropping exhibited a pronounced inhibitory impact on two common genera of pathogenic fungi, Fusarium and Cylindrocarpon Furthermore, the total ginsenosides and diverse monomer ginsenosides present in the roots of intercropped ginseng exhibited varying degrees of enhancement. The results of the analyses indicated that the observed increase in ginsenoside content under intercropping was attributable to interactions between soil microorganisms, including the Prevotella_7, Penicillium, Humicola and Deconica, and soil factors such as SOM, NH₄⁺–N, AP and S-UE. Thus, implementing P. ginseng/A. amurense ecological intercropping can effectively mitigate soil acidification, enhance soil nutrient effectiveness, optimize soil microbial community composition and augment ginsenoside content. Full article

Rhizosphere microorganisms play an important role in the health and development of root systems. Investigating the microbial composition of the rhizosphere is central to understanding the inter-root microbial function of Arundo donax under various cultivation conditions. To complement the metagenomic study of the Arundo donax rhizosphere, here, an amplicon-based metagenomic survey of bacteria and fungi was selected as a practical approach to analyzing the abundance, diversity index, and community structure of rhizosphere bacteria and fungi, as well as to study the effects of different cultivation methods on rhizosphere microbial diversity. Next-generation sequencing and QIIME2 analysis were used. The results indicated that microbial community richness, diversity, and evenness of the hydroponic samples were lower than those of soil samples when examining the α diversity indices of bacteria and fungi using Chao1, ACE, and Shannon metrics. In particular, the relative abundances of Proteobacteria, Rhizobiales, and Incertae sedis in hydroponic materials were higher, while Basidiomycota, Ascomycota, and Actinobacteriota dominated the flora in soil materials when comparing the numbers of OTUs and the ACE community richness estimator. Furthermore, the rhizosphere of hydroponic A. donax contained a higher abundance of nitrogen-fixing bacteria and photosynthetic bacteria, which contribute to root formation. Additionally, there was a significant presence of Basidiomycota, Ascomycota, and Actinobacteriota in soil A. donax, which can form hyphae. This reveals that the microbial community composition of the A. donax rhizosphere is significantly different under various cultivation conditions, suggesting that employing two distinct culturing techniques for Arundo donax may alter the microbiome. Furthermore, it provides technical support for the synergistic interaction between Arundo donax and rhizosphere microorganisms so as to better use the relationship between Arundo donax and basic microorganisms to solve the problems of Arundo donax growth and ecological restoration. Full article

The white poplar (Populus alba) is a dioecious woody plant with significant potential for the phytoremediation of soils. To realize this potential, it is necessary to utilize growth-promoting microorganisms. One potential source of such beneficial microorganisms is the rhizosphere community of wild-growing trees. However, the structure, dynamics, and metabolism of the rhizosphere community of wild-growing white poplar remain poorly understood. To ascertain seasonal dynamics, species diversity, and metabolic potential, we sequenced 16S rRNA genes in metagenomes derived from 165 soil samples collected in spring and autumn from the root surfaces of 102 trees situated in disparate geographical locations. The three most prevalent phyla across all samples are Proteobacteria, Actinobacteriota, and Acidobacteriota. At the order level, the most prevalent orders are Sphingomonadales and Rhizobiales. Accordingly, the families Sphingomonadaceae and Rhizobiaceae were identified as dominant. The rhizospheric microbiome exhibited substantial inter-seasonal variation. Six families, including Caulobacteraceae, Xanthomonadaceae, Chitinophagaceae, Chthoniobacteraceae, Sphingomonadaceae, and Rhizobiaceae, exhibited alterations (spring-to-autumn) across all geographical locations under study. Members of the Rhizobiaceae family, which includes nitrogen-fixing bacteria, can provide poplar with plant-available forms of nitrogen such as nitrate and ammonium. The rhizosphere microbiome may facilitate the conversion of inorganic sulfur into sulfur-containing amino acids, cysteine and methionine, that are bioavailable to plants. Furthermore, the rhizosphere microbiome is capable of synthesizing amino acids, organic acids (including Krebs cycle acids), and some lipids and sugars. Consequently, the rhizosphere community can stimulate poplar growth by providing it with readily available forms of nitrogen and sulfur, as well as building blocks for the synthesis of proteins, nucleic acids, and other macromolecules. Many of these pathways, including nitrogen fixation, were subjected to seasonal changes. Full article

Three common floating bed plants, Eichhornia crassipes, Pistia stratiotes, and Ipomoea aquatica, were selected in the present study to investigate their inhibitory effects on toxic Microcystis aeruginosa. The results showed that all three types of floating-bed plants could considerably inhibit the growth of M. aeruginosa and effectively remove the microcystins (MCs) from water systems, among which, E. crassipes and P. stratiotes were more effective in resisting M. aeruginosa, and the removal rate of the intracellular MCs could be up to 100%. In addition, the roots and leaves of the three plants were enriched with a large number of MCs and demonstrated significant antioxidant responses, as evidenced by the increase in the content of catalase (CAT), glutathione peroxidase (GSH-PX), superoxide dismutase (SOD), and malondialdehyde (MDA) in the roots, stems, and leaves of the plants. Furthermore, this study also showed that Proteobacteria, Bacteroidota, Myxococcota, Verrucomicrobiota, and Actinobacteriota dominated the root microorganisms of the three plants. Moreover, a variety of MC-degrading bacteria, including Sphingomonas, Acinetobacter, Novosphingobium, and Pseudomonas, were found at the genus level, which further provides important basic data for the regulation of eutrophic water bodies and the removal of MCs. Full article

Exopolysaccharides (EPSs) produced by microorganisms play an important role in biotolerance and reducing heavy metal (HM) contamination by limiting the migration of HMs into plants. However, research on the application of EPS-producing marine bacteria for soil heavy metal remediation remains limited, particularly regarding their mechanisms of HM immobilization in soil and impact on plant growth. In this study, the EPS-producing marine bacterium Micrococcus antarcticus HZ was investigated for its ability to immobilize Pb and produce EPSs in soil filtrate. The effects on the growth quality and biomass of pakchoi (Brassica chinensis L.), as well as bacterial communities in inter-root soil contaminated with Pb, were also investigated. The results indicated that HZ could reduce the Pb concentration in the soil filtrate, achieving a removal rate of 43.25–63.5%. The EPS content and pH levels increased in the presence of Pb. Pot experiments showed that adding HZ significantly increased the biomass of pakchoi (9.45–14.69%), vitamin C (Vc) (9.69–12.92%), and soluble protein content (22.58–49.7%). HZ reduced the Pb content in the roots (17.52–47.48%) and leaves (edible tissues) (43.82–52.83%) of pakchoi. HZ increased soil enzyme activities (alkaline phosphatase, dehydrogenase, and urease), and the contents of ammonium nitrogen and nitrate nitrogen. Additionally, HZ also increased the relative abundance of beneficial bacteria (e.g., Proteobacteria, Cyanobacteria, and Chlorobacteria) in the inter-root soil, which have prophylactic and heavy-metal fixation functions. In summary, HZ reduces effective Pb content in edible tissues, roots, and inter-root soil by regulating inter-root soil microbial community structure, increasing soil pH, nitrogen content, and soil enzyme activity, and altering dominant phylum abundance. Full article

Intercropping is an effective cultivation strategy for promoting soil health, changing microbial community, reducing fertiliser application and enhancing the quality of medicinal plants. Nevertheless, the interaction effect of intercropping between Arisaema amurense and Acanthopanax senticosus remains unknown. Herein, we investigated the difference in soil properties, soil enzyme activities, microbial community diversity and active ingredients of A. senticosus in monoculturing versus intercropping of A. senticosus/A. amurense in a field experiment. High-throughput sequencing and liquid chromatography–mass spectrometry were employed to explore the growth promotion effect in the intercropping mode. Results revealed that intercropping benefitted the accumulation of ammonium nitrogen and total nitrogen in soil; total nitrogen and ammonium nitrogen increased by 33% (rhizosphere) and 65% (inter-row) and by 123% (rhizosphere) and 124% (inter-row) at 0–20 cm soil depths, respectively. Furthermore, intercropping increased the soil carbon/nitrogen ratio at the soil from 20 to 40 cm and promoted the growth of the root system of the deep-rooted plant A. senticosus. However, it exerted a certain inhibitory effect on the activities of urease, sucrase and neutral phosphatase on the soil surface. Intercropping increased bacterial diversity and inhibited fungal diversity in soil, potentially preventing the soil microflora changed from bacterial type to fungal type. In terms of community composition, intercropping exhibited a greater effect on bacteria than on fungi. At the phylum level, the relative abundance of microorganisms associated with nutrient cycling and increased ecosystem resistance increased in intercropped soils, such as those of Proteobacteria, Actinobacteriota and Bacteroidota. At the genus level, the bacterial genera that showed significantly increased relative abundance in intercropping soil included unclassified_Acidobacteriales, Sphingomonas, Gemmatimonas and Candidatus_Solibacter. Furthermore, the relative abundance of Cladosporium, a potential plant pathogen in intercropped rhizosphere soil, was 42% lower than that in monocultured rhizosphere soil. Additionally, intercropping can promote the accumulation of eleutheroside B, eleutheroside E, quercetin, protocatechuic acid and polysaccharide, which increased by 551%, 53%, 10%, 28% and 26%, respectively, compared with that after monoculturing. According to the Pearson correlation heat map, rapidly available phosphorus, rapidly available potassium, ammonium nitrogen, nitrate nitrogen, total nitrogen and urease exhibited the greatest impact on the soil microbial community and on the active ingredients of A. senticosus. In conclusion, intercropping altered the composition of the soil microbial community and increased the content of the active ingredients of A. senticosus, consequently begetting economic and ecological benefits. Full article

Clipping is crucial during phytoremediation. However, research into the effects of clipping intensity on the physiology of Dicranopteris pedata (D. pedata) and its interroot soil in the rare-earth-mining area in southern China is lacking. A clipping experiment was conducted to verify the phytoremediation effect of D. pedata. The physiology of D. pedata, such as biomass, antioxidant enzymes, chlorophyll, and rare-earth elements (REEs), were determined after clipping. And the microbial community diversity and soil enzyme activities in the interroot soil of D. pedata were investigated. The phytoremediation efficiency was determined at the end of the experiment. The results showed that the compensatory growth effect of D. pedata was stronger with increasing clipping intensity. There was no significant difference in the α diversity of interroot soil microorganisms of D. pedata at different clipping intensities, but β diversity analysis showed that the clipping treatment group deviated from the control group. Only urease activity decreased among the interroot soil enzymes in D. pedata after clipping, while the soil catalase and sucrase were less responsive to clipping. The REEs accumulated by D. pedata were dominated by light REEs in the aboveground part of the plant, while the amounts of light and heavy rare-earth elements accumulated in the underground part of the plant were similar. The phytoextraction of REEs gradually increased with increasing clipping intensity. It was concluded that 100% clipping once a year is the most appropriate when considering D. pedata’s phytoremediation potential and soil system. The time it takes for 100% clipping of D. pedata to reduce the soil TREEs (total rare-earth elements), LREEs (light rare-earth elements), and HREEs (heavy rare-earth elements) to below-average soil REE concentration in China was estimated to be 25.54 years, 19.56 years, and 65.43 years, respectively, which was significantly lower than that for other clipping intensities and the control group. It is concluded that clipping D. pedata is an effective way to promote phytoextraction efficiency in the southern rare-earth-mining areas. The soil can still support the resumption of D. pedata growth after high-intensity clipping. Full article

Plant roots aid the growth and functions of several kinds of microorganisms such as plant growth-promoting rhizobacteria, mycorrhizal fungi, endophytic bacteria, actinomycetes, nematodes, protozoans which may impart significant impacts on plant health and growth. Plant soil–microbe interaction is an intricate, continuous, and dynamic process that occurs in a distinct zone known as the rhizosphere. Plants interact with these soil microbes in a variety of ways, including competitive, exploitative, neutral, commensal, and symbiotic relationships. Both plant and soil types were found to have an impact on the community diversity and structure of the rhizosphere, or vice versa. The diversity of microorganisms in soil is thought to be essential for the management of soil health and quality because it has different plant growth-promoting or biocontrol effects that could be very advantageous for the host plant and alter plant physiology and nutrition. The composition of microbial community is influenced by soil and plant type. Besides these beneficial microbes, the soil also harbors microorganisms that are detrimental to plants, competing for nutrients and space, and causing diseases. Numerous microorganisms have antagonistic activity and the ability to defend plants from soil-borne diseases. The study of the soil microbiome is essential for formulating strategies for transforming the rhizosphere to the benefit of the plants. This review pays special emphasis on the types of microbial populations in the soil and how they influence plant growth, nutrient acquisition, inter-relationships between soil microbes and plants, stress resistance, carbon sequestration, and phytoremediation. Full article

The sensible use of forest resources and the sound management of forests have become increasingly important throughout the years. In keeping with the trend, a composite forestry operation model has emerged. Traditional Chinese culture and forest management are particularly intertwined in China. Thus, use of the forest–medicine compound management model is recommended. The majority of research on the management of forest–medicine compounds has focused on how to grow more effective medicinal plants, ignoring the effects of the chemicals used on the soil environment, particularly the soil micro-environment. A forest–medicine system was established in South China to investigate the impacts of planting Aspidistra elatior on the variety of rhizospheric microorganisms and their ability to use carbon sources. In the plots with or without A. elatior, three dominant plants (Castanopsis hystrix, Psychotria rubra, and Ficus hirta) grew soil rhizosphere microbes, which were analyzed using Biolog EcoPlates. The study found that planting medicinal plants in the understory improved the soil’s nutritional content, increased the inter-root microbial communities of other medicinal plants, and enhanced the microbes’ ability to use soil carbon sources. The forest–medicine complex model, which rationalizes the use of forest clearings and generates economic and ecological benefits, can significantly increase the quantity of dominant microorganisms and enhance the enrichment of other species, resulting in a positive impact on the soil environment. These findings suggest that the forest–medicine compound management model can improve the use of soil carbon sources throughout the forest system. Full article

Understanding soil–plant–microbe inter- and intra- interactions are essential for ensuring proper soil health, quality, and soil-mediated ecosystem services (e.g., nutrient cycling) required for human–plant–animal life. Intensive and unsustainable farming practices can decrease soil microbial biodiversity, fertility, and quality leading to soil degradation, impaired nutrient cycling, and the incapability of soil to support plant growth. Under such a context, soil biological fertility can appear as a regenerative component that has the potential to harmonize and improve soil’s physical, chemical, and biological parameters. This study defines and discusses the microbiome in the rhizosphere, microbial nutrient cycling, and biological soil crusts as the major components of soil biological fertility, and explores the answers to the following questions: (i) how does the rhizosphere promote plant growth, development, and nutrient cycling through soil microorganisms (e.g., bacteria, fungi)? (ii) How can soil microorganisms regulate macronutrient cycling and facilitate biocrust formation? This review reveals that soil biological fertility is crucial for increasing crop resilience and productivity as well as sustainability in agriculture. Additionally, the reintroduction of plant growth promoting rhizobacteria, a quantitative estimation of the root exudate’s composition, identifying the spatiotemporal dynamics of potassium solubilizing bacteria and establishing biological soil crusts in agricultural lands remain the major tasks for improving soil biological fertility and the transition towards regenerative agriculture. Full article

Endophytic fungi are a diverse group of microorganisms that colonize the inter- or intracellular spaces of plants and exhibit mutual benefits. Their interactions with the host plant and other microbiomes are multidimensional and play a crucial role in the production of secondary metabolites. We screened bioactive compounds present in the extracts of Aspergillus flavus, an endophytic fungus isolated from the roots of the medicinal grass Cynodon dactylon, for its anticancer potential. An in vitro analysis of the Ethyl acetate extract from A. flavus showed significant cytostatic effects (IC₅₀: 16.25 μg/mL) against breast cancer cells (MCF-7). A morphological analysis of the cells and a flow cytometry of the cells with annexin V/Propidium Iodide suggested that the extract induced apoptosis in the MCF-7 cells. The extract of A. flavus increased reactive oxygen species (ROS) generation and caused a loss of mitochondrial membrane potential in MCF-7 cells. To identify the metabolites that might be responsible for the anticancer effect, the extract was subjected to a gas chromatography-mass spectrometry (GC-MS) analysis. Interestingly, nine phytochemicals that induced cytotoxicity in the breast cancer cell line were found in the extract. The in silico molecular docking and molecular dynamics simulation studies revealed that two compounds, 2,4,7-trinitrofluorenone and 3α, 5 α-cyclo-ergosta-7,9(11), 22t-triene-6beta-ol exhibited significant binding affinities (−9.20, and −9.50 Kcal/mol, respectively) against Bcl-2, along with binding stability and intermolecular interactions of its ligand-Bcl-2 complexes. Overall, the study found that the endophytic A. flavus from C. dactylon contains plant-like bioactive compounds that have a promising effect in breast cancer. Full article

For years, apical microleakage has been considered the main factor in endodontic failure therapy. Sealing abilities and antibacterial properties of root canal sealers and intracanal medicaments between appointments have been recognized as important factors for the success of endodontic treatment. Background: Apical periodontitis (AP) is an inflammatory disease around the apex of a tooth root. The microorganisms reach the pulp by dentinal tubules especially when there is an open cavity after a coronal fracture and the pulp is in contact with the septic oral environment. The aim of the study was to evaluate the dynamics of healing by recording periapical index (PAI), after two appointment endodontic procedure with commercial or experimental intracanal medicament. Methods: A total of 40 patients with primary chronic apical periodontitis requiring root canal treatment were assigned randomly into four groups according to the teeth medicated with dehydrated plant extract, calcium hydroxide, calcium hydroxide mixed with chlorhexidine (CHX) gel 2%, Walkhoff paste and obturated on a second visit, 7 days later. Patients were recalled at intervals of 3, 6, and 12 months to evaluate the treated teeth both clinically and radiographically for periapical healing. A 5-score scale PAI was used to evaluate stages of the periapical healing on a periapical radiography using a Kodak Dental imaging software provided by the radio-imagistic center. Results: Radiological evaluation revealed that the experimental intracanal medicament had a cumulative positive healing capacity by reducing the PAI as well as all resorbable pastes used in endodontic conventional therapy. Conclusions: The results suggest that the vegetable dry extract obtained from Epilobium parviflorum Schreb can be used as an inter-appointment medication among with the root canal filling for the positive effect on apical healing quantified by reducing the PAI. Full article

Application of diazotrophs (N₂-fixing microorganisms) can decrease the overuse of nitrogen (N) fertilizer. Until now, there are few studies on the effects of diazotroph application on microbial communities of major crops. In this study, the diazotrophic and endospore-forming Paenibacillus triticisoli BJ-18 was inoculated into maize soils containing different N levels. The effects of inoculation on the composition and abundance of the bacterial, diazotrophic and fungal communities in the rhizosphere and root/shoot endosphere of maize were evaluated by sequencing the 16S rRNA, nifH gene and ITS (Inter Transcribed Spacer) region. P. triticisoli BJ-18 survived and propagated in all the compartments of the maize rhizosphere, root and shoot. The abundances and diversities of the bacterial and diazotrophic communities in the rhizosphere were significantly higher than in both root and shoot endospheres. Each compartment of the rhizosphere, root and shoot had its specific bacterial and diazotrophic communities. Our results showed that inoculation reshaped the structures of the bacterial, diazotrophic and fungal communities in the maize rhizosphere and endosphere. Inoculation reduced the interactions of the bacteria and diazotrophs in the rhizosphere and endosphere, while it increased the fungal interactions. After inoculation, the abundances of Pseudomonas, Bacillus and Paenibacillus in all three compartments, Klebsiella in the rhizosphere and Paenibacillus in the root and shoot were significantly increased, while the abundances of Fusarium and Giberella were greatly reduced. Paenibacillus was significantly correlated with plant dry weight, nitrogenase, N₂-fixing rate, P solubilization and other properties of the soil and plant. Full article

Arbuscular mycorrhizal fungi (AMF) are beneficial soil microorganisms establishing mutualistic symbioses with the roots of the most important food crops and playing key roles in the maintenance of long-term soil fertility and health. The great inter- and intra-specific AMF diversity can be fully exploited by selecting AMF inocula on the basis of their colonization ability and efficiency, which are affected by fungal and plant genotypes and diverse environmental variables. The multiple services provided by AMF are the result of the synergistic activities of the bacterial communities living in the mycorrhizosphere, encompassing nitrogen fixation, P solubilization, and the production of phytohormones, siderophores, and antibiotics. The tripartite association among host plants, mycorrhizal symbionts, and associated bacteria show beneficial emerging properties which could be efficiently exploited in sustainable agriculture. Further in-depth studies, both in microcosms and in the field, performed on different AMF species and isolates, should evaluate their colonization ability, efficiency, and resilience. Transcriptomic studies can reveal the expression levels of nutrient transporter genes in fungal absorbing hyphae in the presence of selected bacterial strains. Eventually, newly designed multifunctional microbial consortia can be utilized as biofertilizers and biostimulants in sustainable and innovative production systems. Full article

Aim: Endodontic infections are caused by the invasion of various microorganisms into the root canal system. Candida albicans is a biofilm forming yeast and the most prevalent eukaryotic microorganism in endodontic infections. In this study we investigated the ability of C. albicans to tolerate treatment with standard endodontic irrigants NaOCl (sodium hypochlorite), ethylenediaminetetraacetic acid (EDTA) and a combination thereof. We hypothesized that biofilm formed from a panel of clinical isolates differentially tolerate disinfectant regimens, and this may have implications for secondary endodontic infections. Methodology: Mature C. albicans biofilms were formed from 30 laboratory and oral clinical isolates and treated with either 3% NaOCl, 17% EDTA or a sequential treatment of 3% NaOCl followed by 17% EDTA for 5 min. Biofilms were then washed, media replenished and cells reincubated for an additional 24, 48 and 72 h at 37 °C. Regrowth was quantified using metabolic reduction, electrical impedance, biofilm biomass and microscopy at 0, 24, 48 and 72 h. Results: Microscopic analysis and viability readings revealed a significant initial killing effect by NaOCl, followed by a time dependent significant regrowth of C. albicans, but with inter-strain variability. In contrast to NaOCl, there was a continuous reduction in viability after EDTA treatment. Moreover, EDTA significantly inhibited regrowth after NaOCl treatment, though viable cells were still observed. Conclusions: Our results indicate that different C. albicans biofilm phenotypes grown in a non-complex surface topography have the potential to differentially tolerate standard endodontic irrigation protocols. This is the first study to report a strain dependent impact on efficacy of endodontic irrigants. Its suggested that within the complex topography of the root canal, a more difficult antimicrobial challenge, that existing endodontic irrigant regimens permit cells to regrow and drive secondary infections. Full article