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Keywords = hyperspectral fluorescence analysis

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36 pages, 1925 KiB  
Review
Deep Learning-Enhanced Spectroscopic Technologies for Food Quality Assessment: Convergence and Emerging Frontiers
by Zhichen Lun, Xiaohong Wu, Jiajun Dong and Bin Wu
Foods 2025, 14(13), 2350; https://doi.org/10.3390/foods14132350 - 2 Jul 2025
Viewed by 1259
Abstract
Nowadays, the development of the food industry and economic recovery have driven escalating consumer demands for high-quality, nutritious, and safe food products, and spectroscopic technologies are increasingly prominent as essential tools for food quality inspection. Concurrently, the rapid rise of artificial intelligence (AI) [...] Read more.
Nowadays, the development of the food industry and economic recovery have driven escalating consumer demands for high-quality, nutritious, and safe food products, and spectroscopic technologies are increasingly prominent as essential tools for food quality inspection. Concurrently, the rapid rise of artificial intelligence (AI) has created new opportunities for food quality detection. As a critical branch of AI, deep learning synergizes with spectroscopic technologies to enhance spectral data processing accuracy, enable real-time decision making, and address challenges from complex matrices and spectral noise. This review summarizes six cutting-edge nondestructive spectroscopic and imaging technologies, near-infrared/mid-infrared spectroscopy, Raman spectroscopy, fluorescence spectroscopy, hyperspectral imaging (spanning the UV, visible, and NIR regions, to simultaneously capture both spatial distribution and spectral signatures of sample constituents), terahertz spectroscopy, and nuclear magnetic resonance (NMR), along with their transformative applications. We systematically elucidate the fundamental principles and distinctive merits of each technological approach, with a particular focus on their deep learning-based integration with spectral fusion techniques and hybrid spectral-heterogeneous fusion methodologies. Our analysis reveals that the synergy between spectroscopic technologies and deep learning demonstrates unparalleled superiority in speed, precision, and non-invasiveness. Future research should prioritize three directions: multimodal integration of spectroscopic technologies, edge computing in portable devices, and AI-driven applications, ultimately establishing a high-precision and sustainable food quality inspection system spanning from production to consumption. Full article
(This article belongs to the Section Food Quality and Safety)
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19 pages, 4387 KiB  
Article
Comparing Chlorophyll Fluorescence and Hyperspectral Indices in Drought-Stressed Young Plants in a Maize Diversity Panel
by Lovro Vukadinović, Vlatko Galić, Andrija Brkić, Antun Jambrović and Domagoj Šimić
Agronomy 2025, 15(7), 1604; https://doi.org/10.3390/agronomy15071604 - 30 Jun 2025
Viewed by 327
Abstract
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in [...] Read more.
Progressing climate change necessitates the development of drought-tolerant crops, and understanding the temporal dynamics of genotype x environment interactions (GxE) is crucial. This study aimed to test established phenotyping methods (chlorophyll a fluorescence (ChlF) and hyperspectral (HS) imaging) to investigate the variability in 165 inbred maize lines’ responses to progressive drought stress. The inbred maize lines were grown under controlled conditions and were challenged with water withholding. Fifteen ChlF and HS indices were measured at three consecutive time points (M1, M2, and M3). Mixed models were employed to estimate the GxT interaction effects via Best Linear Unbiased Predictors (BLUPs) for each variable. A Principal Component Analysis (PCA) performed on the GxT BLUPs from each time point revealed a highly dynamic interaction structure. While the primary axis of GxT variation (PC1) was consistently associated with HI, which is related to plant vigor, across all measurement times, its importance intensified under severe stress (M3). The secondary axis (PC2) shifted markedly over time: after initial variations at M1, it was dominated by GxT effects in specific ChlF parameters related to photosynthetic regulation under moderate stress (M2), before shifting again under severe stress (M3) to reflect the GxT effects on indices potentially related to pigment degradation and other stress indicators. Full article
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19 pages, 721 KiB  
Review
Non-Invasive Food Authentication Using Vibrational Spectroscopy Techniques for Low-Resolution Food Fingerprinting
by Wanchong He and Qinghua Zeng
Appl. Sci. 2025, 15(11), 5948; https://doi.org/10.3390/app15115948 - 25 May 2025
Viewed by 596
Abstract
To address issues of food authenticity, such as fraud and origin tracing, it is essential to employ methods in food fingerprinting that are efficient, economical, and easy to use. This review highlights the capabilities of vibrational spectroscopy techniques, including mid-infrared (MIR), near-infrared (NIR), [...] Read more.
To address issues of food authenticity, such as fraud and origin tracing, it is essential to employ methods in food fingerprinting that are efficient, economical, and easy to use. This review highlights the capabilities of vibrational spectroscopy techniques, including mid-infrared (MIR), near-infrared (NIR), and Raman spectroscopy, as non-invasive tools for food authentication. These methods offer rapid, cost-effective, and environmentally friendly analysis across diverse food matrices. This review further discusses recent advances such as hyperspectral imaging, portable devices, and data fusion strategies that integrate chemometrics and artificial intelligence. Despite their promise, challenges remain, including limited sensitivity for certain compounds, spectral overlaps, fluorescence interference in Raman spectroscopy, and the need for standardized validation protocols. Looking forward, trends such as the miniaturization of devices, real-time monitoring, and AI-enhanced spectral interpretation are expected to significantly advance the field of food authentication. Full article
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20 pages, 283 KiB  
Review
Advanced Plant Phenotyping Technologies for Enhanced Detection and Mode of Action Analysis of Herbicide Damage Management
by Zhongzhong Niu, Xuan Li, Tianzhang Zhao, Zhiyuan Chen and Jian Jin
Remote Sens. 2025, 17(7), 1166; https://doi.org/10.3390/rs17071166 - 25 Mar 2025
Cited by 1 | Viewed by 854
Abstract
Weed control is fundamental to modern agriculture, underpinning crop productivity, food security, and the economic sustainability of farming operations. Herbicides have long been the cornerstone of effective weed management, significantly enhancing agricultural yields over recent decades. However, the field now faces critical challenges, [...] Read more.
Weed control is fundamental to modern agriculture, underpinning crop productivity, food security, and the economic sustainability of farming operations. Herbicides have long been the cornerstone of effective weed management, significantly enhancing agricultural yields over recent decades. However, the field now faces critical challenges, including stagnation in the discovery of new herbicide modes of action (MOAs) and the escalating prevalence of herbicide-resistant weed populations. High research and development costs, coupled with stringent regulatory hurdles, have impeded the introduction of novel herbicides, while the widespread reliance on glyphosate-based systems has accelerated resistance development. In response to these issues, advanced image-based plant phenotyping technologies have emerged as pivotal tools in addressing herbicide-related challenges in weed science. Utilizing sensor technologies such as hyperspectral, multispectral, RGB, fluorescence, and thermal imaging methods, plant phenotyping enables the precise monitoring of herbicide drift, analysis of resistance mechanisms, and development of new herbicides with innovative MOAs. The integration of machine learning algorithms with imaging data further enhances the ability to detect subtle phenotypic changes, predict herbicide resistance, and facilitate timely interventions. This review comprehensively examines the application of image phenotyping technologies in weed science, detailing various sensor types and deployment platforms, exploring modeling methods, and highlighting unique findings and innovative applications. Additionally, it addresses current limitations and proposes future research directions, emphasizing the significant contributions of phenotyping advancements to sustainable and effective weed management strategies. By leveraging these sophisticated technologies, the agricultural sector can overcome existing herbicide challenges, ensuring continued productivity and resilience in the face of evolving weed pressures. Full article
(This article belongs to the Section Remote Sensing in Agriculture and Vegetation)
17 pages, 5299 KiB  
Article
Detection of Tomato Leaf Pesticide Residues Based on Fluorescence Spectrum and Hyper-Spectrum
by Jiayu Gao, Xuhui Yang, Simo Liu, Yufeng Liu and Xiaofeng Ning
Horticulturae 2025, 11(2), 121; https://doi.org/10.3390/horticulturae11020121 - 23 Jan 2025
Viewed by 1281
Abstract
In order to rapidly and nondestructively detect pesticide residues on tomato leaves, fluorescence spectroscopy and hyperspectral techniques were used to study the nondestructive detection of three different concentrations of benzyl-pyrazolyl esters on the surface of tomato leaves, respectively. In this study, fluorescence spectrum [...] Read more.
In order to rapidly and nondestructively detect pesticide residues on tomato leaves, fluorescence spectroscopy and hyperspectral techniques were used to study the nondestructive detection of three different concentrations of benzyl-pyrazolyl esters on the surface of tomato leaves, respectively. In this study, fluorescence spectrum acquisition and hyperspectral imaging processing of tomato leaf samples with and without pesticides were conducted, and spectral data from regions of interest of hyperspectral images were extracted. The data in the spectral raw bands were optimized using convolutional smoothing (S-G), standard normal variable transformation (SNV), multiplicative scatter correction (MSC), and baseline calibration (baseline) algorithms, respectively. In order to improve the operating rate of discrimination, a continuous projection algorithm (SPA) was used to extract the characteristic wavelengths of the fluorescence spectra and hyperspectral data of pesticide residues, and algorithms such as the least-squares support vector machine (LSSVM) algorithm and least partial squares regression (PLSR) were used to build a quantitative model, while algorithms such as the convolutional neural network (BPNN) algorithm and decision tree algorithm (CART) were used to build a qualitative model. According to the results, R2 of the model of hyperspectral data after SG-SNV preprocessing and PLSR modeling reached 0.9974, RMSEC reached 0.0221, and RMSEP reached 0.0565. R2 of the model of fluorescence spectral data after SG-MSC preprocessing and SVM modeling reached 0.9986, RMSEC reached 0.2496, and RMSEP reached 0.4193. Qualitative analysis was established based on the characteristic wavelengths of hyper-spectrum and fluorescence spectrum extracted by the SPA algorithm, and the accuracy of the training sets of the optimal qualitative model reached 94.9% and 95.7%, respectively, and the accuracy of the test sets both reached 100%. After comparison, the quantitative model of data based on fluorescence spectrum for pesticide residue detection in tomato leaves proved to have a better effect, and the qualitative model showed higher accuracy in discrimination. Therefore, the fluorescence spectral and hyperspectral imaging techniques applied to tomato leaf pesticide detection enjoy a promising application prospect. Full article
(This article belongs to the Section Vegetable Production Systems)
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25 pages, 10652 KiB  
Article
Enhancing Sustainable Automated Fruit Sorting: Hyperspectral Analysis and Machine Learning Algorithms
by Dmitry O. Khort, Alexey Kutyrev, Igor Smirnov, Nikita Andriyanov, Rostislav Filippov, Andrey Chilikin, Maxim E. Astashev, Elena A. Molkova, Ruslan M. Sarimov, Tatyana A. Matveeva and Sergey V. Gudkov
Sustainability 2024, 16(22), 10084; https://doi.org/10.3390/su162210084 - 19 Nov 2024
Cited by 5 | Viewed by 2129
Abstract
Recognizing and classifying localized lesions on apple fruit surfaces during automated sorting is critical for improving product quality and increasing the sustainability of fruit production. This study is aimed at developing sustainable methods for fruit sorting by applying hyperspectral analysis and machine learning [...] Read more.
Recognizing and classifying localized lesions on apple fruit surfaces during automated sorting is critical for improving product quality and increasing the sustainability of fruit production. This study is aimed at developing sustainable methods for fruit sorting by applying hyperspectral analysis and machine learning to improve product quality and reduce losses. The employed hyperspectral technologies and machine learning algorithms enable the rapid and accurate detection of defects on the surface of fruits, enhancing product quality and reducing the number of rejects, thereby contributing to the sustainability of agriculture. This study seeks to advance commercial fruit quality control by comparing hyperspectral image classification algorithms to detect apple lesions caused by pathogens, including sunburn, scab, and rot, on three apple varieties: Honeycrisp, Gala, and Jonagold. The lesions were confirmed independently using expert judgment, real-time PCR, and 3D fluorimetry, providing a high accuracy of ground truth data and allowing conclusions to be drawn on ways to improve the sustainability and safety of the agrocenosis in which the fruits are grown. Hyperspectral imaging combined with mathematical analysis revealed that Venturia inaequalis is the main pathogen responsible for scab, while Botrytis cinerea and Penicillium expansum are the main causes of rot. This comparative study is important because it provides a detailed analysis of the performance of both supervised and unsupervised classification methods for hyperspectral imagery, which is essential for the development of reliable automated grading systems. Support Vector Machines (SVM) proved to be the most accurate, with the highest average adjusted Rand Index (ARI) scores for sunscald (0.789), scab (0.818), and rot (0.854), making it the preferred approach for classifying apple lesions during grading. K-Means performed well for scab (0.786) and rot (0.84) classes, but showed limitations with lower metrics for other lesion types. A design and technological scheme of an optical system for identifying micro- and macro-damage to fruit tissues is proposed, and the dependence of the percentage of apple damage on the rotation frequency of the sorting line rollers is obtained. The optimal values for the rotation frequency of the rollers, at which the damage to apples is less than 5%, are up to 6 Hz. The results of this study confirm the high potential of hyperspectral data for the non-invasive recognition and classification of apple diseases in automated sorting systems with an accuracy comparable to that of human experts. These results provide valuable insights into the optimization of machine learning algorithms for agricultural applications, contributing to the development of more efficient and accurate fruit quality control systems, improved production sustainability, and the long-term storage of fruits. Full article
(This article belongs to the Special Issue Agricultural Engineering for Sustainable Development)
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19 pages, 3085 KiB  
Review
Research Progress of Spectral Imaging Techniques in Plant Phenotype Studies
by Qian Zhang, Rupeng Luan, Ming Wang, Jinmeng Zhang, Feng Yu, Yang Ping and Lin Qiu
Plants 2024, 13(21), 3088; https://doi.org/10.3390/plants13213088 - 2 Nov 2024
Cited by 7 | Viewed by 2876
Abstract
Spectral imaging technique has been widely applied in plant phenotype analysis to improve plant trait selection and genetic advantages. The latest developments and applications of various optical imaging techniques in plant phenotypes were reviewed, and their advantages and applicability were compared. X-ray computed [...] Read more.
Spectral imaging technique has been widely applied in plant phenotype analysis to improve plant trait selection and genetic advantages. The latest developments and applications of various optical imaging techniques in plant phenotypes were reviewed, and their advantages and applicability were compared. X-ray computed tomography (X-ray CT) and light detection and ranging (LiDAR) are more suitable for the three-dimensional reconstruction of plant surfaces, tissues, and organs. Chlorophyll fluorescence imaging (ChlF) and thermal imaging (TI) can be used to measure the physiological phenotype characteristics of plants. Specific symptoms caused by nutrient deficiency can be detected by hyperspectral and multispectral imaging, LiDAR, and ChlF. Future plant phenotype research based on spectral imaging can be more closely integrated with plant physiological processes. It can more effectively support the research in related disciplines, such as metabolomics and genomics, and focus on micro-scale activities, such as oxygen transport and intercellular chlorophyll transmission. Full article
(This article belongs to the Section Plant Modeling)
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22 pages, 3948 KiB  
Article
Development of a Hyperspectral Imaging Protocol for Painting Applications at the University of Seville
by Giovanna Vasco, Hélène Aureli, Isabel Fernández-Lizaranzu, Javier Moreno-Soto, Anabelle Križnar, Rubén Parrilla-Giraldez, Emilio Gómez-González and Miguel Angel Respaldiza Galisteo
Heritage 2024, 7(11), 5986-6007; https://doi.org/10.3390/heritage7110281 - 23 Oct 2024
Cited by 2 | Viewed by 2463
Abstract
In the last decade, the hyperspectral imaging (HSI) method allowed performing non-invasive analysis in the field of cultural heritage. However, a considerable limitation was given by redundant and time-consuming features, with the necessary application of statistical algorithms and image-processing tools to extract relevant [...] Read more.
In the last decade, the hyperspectral imaging (HSI) method allowed performing non-invasive analysis in the field of cultural heritage. However, a considerable limitation was given by redundant and time-consuming features, with the necessary application of statistical algorithms and image-processing tools to extract relevant information. In this study, the Centro Nacional de Aceleradores (CNA) and the Group of Interdisciplinary Physics (GFI) of the School of Engineering (ETSI) of the University of Seville tested the application of three different hyperspectral cameras in the visible and near-infrared (VNIR) and short-wave infrared (SWIR) range for the investigation of an ancient painting. A reference-based procedure was realised to build a starting personal library and to evaluate the best working conditions for non-invasive and non-destructive characterisation with data treatment using the commercially available software Evince® and Specim IQ® to apply, respectively, the Principal Component Analysis (PCA) model functions and the classification method. The evaluation of the protocol was tested by acquiring complementary information by X-ray fluorescence (XRF), Ultraviolet Luminescence (UVL) imaging, and Infrared Reflectography (IRR). This exploration established a simplified protocol to analyse the large collection of paintings of the Archbishop’s Palace and the Cathedral of Seville. Full article
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16 pages, 10750 KiB  
Article
Classification of Citrus Leaf Diseases Using Hyperspectral Reflectance and Fluorescence Imaging and Machine Learning Techniques
by Hyun Jung Min, Jianwei Qin, Pappu Kumar Yadav, Quentin Frederick, Thomas Burks, Megan Dewdney, Insuck Baek and Moon Kim
Horticulturae 2024, 10(11), 1124; https://doi.org/10.3390/horticulturae10111124 - 22 Oct 2024
Cited by 1 | Viewed by 2167
Abstract
Citrus diseases are significant threats to citrus groves, causing financial losses through reduced fruit size, blemishes, premature fruit drop, and tree death. The detection of citrus diseases via leaf inspection can improve grove management and mitigation efforts. This study explores the potential of [...] Read more.
Citrus diseases are significant threats to citrus groves, causing financial losses through reduced fruit size, blemishes, premature fruit drop, and tree death. The detection of citrus diseases via leaf inspection can improve grove management and mitigation efforts. This study explores the potential of a portable reflectance and fluorescence hyperspectral imaging (HSI) system for detecting and classifying a control group and citrus leaf diseases, including canker, Huanglongbing (HLB), greasy spot, melanose, scab, and zinc deficiency. The HSI system was used to simultaneously collect reflectance and fluorescence images from the front and back sides of the leaves. Nine machine learning classifiers were trained using full spectra and spectral bands selected through principal component analysis (PCA) from the HSI with pixel-based and leaf-based spectra. A support vector machine (SVM) classifier achieved the highest overall classification accuracy of 90.7% when employing the full spectra of combined reflectance and fluorescence data and pixel-based analysis from the back side of the leaves, whereas a discriminant analysis classifier yielded the best accuracy of 94.5% with the full spectra of combined reflectance and fluorescence data and leaf-based analysis. Among the diseases, control, scab, and melanose were classified most accurately, each with over 90% accuracy. Therefore, the integration of the reflectance and fluorescence HSI with advanced machine learning techniques demonstrated the capability to accurately detect and classify these citrus leaf diseases with high precision. Full article
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15 pages, 3341 KiB  
Article
Inkjet-Printed Localized Surface Plasmon Resonance Subpixel Gas Sensor Array for Enhanced Identification and Visualization of Gas Spatial Distributions from Multiple Odor Sources
by Tianshu Jiang, Hao Guo, Lingpu Ge, Fumihiro Sassa and Kenshi Hayashi
Sensors 2024, 24(20), 6731; https://doi.org/10.3390/s24206731 - 19 Oct 2024
Viewed by 1322
Abstract
The visualization of the spatial distributions of gases from various sources is essential to understanding the composition, localization, and behavior of these gases. In this study, an inkjet-printed localized surface plasmon resonance (LSPR) subpixel gas sensor array was developed to visualize the spatial [...] Read more.
The visualization of the spatial distributions of gases from various sources is essential to understanding the composition, localization, and behavior of these gases. In this study, an inkjet-printed localized surface plasmon resonance (LSPR) subpixel gas sensor array was developed to visualize the spatial distributions of gases and to differentiate between acetic acid, geraniol, pentadecane, and cis-jasmone. The sensor array, which integrates gold nanoparticles (AuNPs), silver nanoparticles (AgNPs), and fluorescent pigments, was positioned 3 cm above the gas source. Hyperspectral imaging was used to capture the LSPR spectra across the sensor array, and these spectra were then used to construct gas information matrices. Principal component analysis (PCA) enabled effective classification of the gases and localization of their sources based on observed spectral differences. Heat maps that visualized the gas concentrations were generated using the mean squared error (MSE) between the sensor responses and reference spectra. The array identified and visualized the four gas sources successfully, thus demonstrating its potential for gas localization and detection applications. The study highlights a straightforward, cost-effective approach to gas sensing and visualization, and in future work, we intend to refine the sensor fabrication process and enhance the detection of complex gas mixtures. Full article
(This article belongs to the Special Issue Optical Gas Sensing and Applications)
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22 pages, 2642 KiB  
Article
Fluorescence and Hyperspectral Sensors for Nondestructive Analysis and Prediction of Biophysical Compounds in the Green and Purple Leaves of Tradescantia Plants
by Renan Falcioni, Roney Berti de Oliveira, Marcelo Luiz Chicati, Werner Camargos Antunes, José Alexandre M. Demattê and Marcos Rafael Nanni
Sensors 2024, 24(19), 6490; https://doi.org/10.3390/s24196490 - 9 Oct 2024
Cited by 2 | Viewed by 1601
Abstract
The application of non-imaging hyperspectral sensors has significantly enhanced the study of leaf optical properties across different plant species. In this study, chlorophyll fluorescence (ChlF) and hyperspectral non-imaging sensors using ultraviolet-visible-near-infrared shortwave infrared (UV-VIS-NIR-SWIR) bands were used to evaluate leaf biophysical parameters. For [...] Read more.
The application of non-imaging hyperspectral sensors has significantly enhanced the study of leaf optical properties across different plant species. In this study, chlorophyll fluorescence (ChlF) and hyperspectral non-imaging sensors using ultraviolet-visible-near-infrared shortwave infrared (UV-VIS-NIR-SWIR) bands were used to evaluate leaf biophysical parameters. For analyses, principal component analysis (PCA) and partial least squares regression (PLSR) were used to predict eight structural and ultrastructural (biophysical) traits in green and purple Tradescantia leaves. The main results demonstrate that specific hyperspectral vegetation indices (HVIs) markedly improve the precision of partial least squares regression (PLSR) models, enabling reliable and nondestructive evaluations of plant biophysical attributes. PCA revealed unique spectral signatures, with the first principal component accounting for more than 90% of the variation in sensor data. High predictive accuracy was achieved for variables such as the thickness of the adaxial and abaxial hypodermis layers (R2 = 0.94) and total leaf thickness, although challenges remain in predicting parameters such as the thickness of the parenchyma and granum layers within the thylakoid membrane. The effectiveness of integrating ChlF and hyperspectral technologies, along with spectroradiometers and fluorescence sensors, in advancing plant physiological research and improving optical spectroscopy for environmental monitoring and assessment. These methods offer a good strategy for promoting sustainability in future agricultural practices across a broad range of plant species, supporting cell biology and material analyses. Full article
(This article belongs to the Special Issue Spectral Detection Technology, Sensors and Instruments, 2nd Edition)
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16 pages, 3076 KiB  
Article
Integrating Hyperspectral Reflectance and Physiological Parameters to Detect Urban Tree Stress: A Study of Drought and Simulated Acid Rain
by Ukhan Jeong, Young Jo Yun and Eun Ju Cheong
Urban Sci. 2024, 8(3), 106; https://doi.org/10.3390/urbansci8030106 - 5 Aug 2024
Viewed by 1462
Abstract
With urbanization and climate change worsening, urban trees are constantly exposed to environmental stress. To enhance the functionality and health of trees, it is crucial to rapidly and non-destructively detect and respond to tree stress. Research utilizing hyperspectral characteristics for detecting various stresses [...] Read more.
With urbanization and climate change worsening, urban trees are constantly exposed to environmental stress. To enhance the functionality and health of trees, it is crucial to rapidly and non-destructively detect and respond to tree stress. Research utilizing hyperspectral characteristics for detecting various stresses has recently been actively pursued. This study conducted comparative analysis using various leaf physiological parameters (chlorophyll content, chlorophyll fluorescence, leaf water, and gas exchange status) and hyperspectral data (VIS: visible ray; SWIR: short-wave infrared) to diagnose stress in Prunus yedoensis, commonly grown urban trees, by subjecting them simultaneously to different stresses (drought and simulated acid rain). The findings suggest that hyperspectral reflectance proved more responsive in identifying stress compared to the physiological parameters. Initially, VIS was more effective in detecting two stress responses than SWIR through a classification model (PLS-DA: partial least squares-discriminant analysis). Although SWIR initially faced challenges in simulated acid rain stress detection, spectral preprocessing (SNV: standard normal variate, + S.G 2nd: Savitzky–Golay 2nd derivative) enhanced its stress classification accuracy. Over time, the SWIR bands (1437 nm, 1667 nm, and 1949 nm) exhibited characteristics (such as moisture detection) more closely aligned with stress responses compared to VIS, as determined through PCA (principal component analysis). Hyperspectral reflectance also revealed the potential to measure chlorophyll fluorescence (Fo: minimum fluorescence). Building upon the foundational data of this study, the future potential of diagnosing urban tree stress using portable spectrometers is strong. Full article
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13 pages, 904 KiB  
Review
Advancing DIEP Flap Monitoring with Optical Imaging Techniques: A Narrative Review
by Hailey Hwiram Kim, In-Seok Song and Richard Jaepyeong Cha
Sensors 2024, 24(14), 4457; https://doi.org/10.3390/s24144457 - 10 Jul 2024
Cited by 2 | Viewed by 2560
Abstract
Objectives: This review aims to explore recent advancements in optical imaging techniques for monitoring the viability of Deep Inferior Epigastric Perforator (DIEP) flap reconstruction. The objectives include highlighting the principles, applications, and clinical utility of optical imaging modalities such as near-infrared spectroscopy (NIRS), [...] Read more.
Objectives: This review aims to explore recent advancements in optical imaging techniques for monitoring the viability of Deep Inferior Epigastric Perforator (DIEP) flap reconstruction. The objectives include highlighting the principles, applications, and clinical utility of optical imaging modalities such as near-infrared spectroscopy (NIRS), indocyanine green (ICG) fluorescence angiography, laser speckle contrast imaging (LSCI), hyperspectral imaging (HSI), dynamic infrared thermography (DIRT), and short-wave infrared thermography (SWIR) in assessing tissue perfusion and oxygenation. Additionally, this review aims to discuss the potential of these techniques in enhancing surgical outcomes by enabling timely intervention in cases of compromised flap perfusion. Materials and Methods: A comprehensive literature review was conducted to identify studies focusing on optical imaging techniques for monitoring DIEP flap viability. We searched PubMed, MEDLINE, and relevant databases, including Google Scholar, Web of Science, Scopus, PsycINFO, IEEE Xplore, and ProQuest Dissertations & Theses, among others, using specific keywords related to optical imaging, DIEP flap reconstruction, tissue perfusion, and surgical outcomes. This extensive search ensured we gathered comprehensive data for our analysis. Articles discussing the principles, applications, and clinical use of NIRS, ICG fluorescence angiography, LSCI, HSI, DIRT, and SWIR in DIEP flap monitoring were selected for inclusion. Data regarding the techniques’ effectiveness, advantages, limitations, and potential impact on surgical decision-making were extracted and synthesized. Results: Optical imaging modalities, including NIRS, ICG fluorescence angiography, LSCI, HSI, DIRT, and SWIR offer a non- or minimal-invasive, real-time assessment of tissue perfusion and oxygenation in DIEP flap reconstruction. These techniques provide objective and quantitative data, enabling surgeons to monitor flap viability accurately. Studies have demonstrated the effectiveness of optical imaging in detecting compromised perfusion and facilitating timely intervention, thereby reducing the risk of flap complications such as partial or total loss. Furthermore, optical imaging modalities have shown promise in improving surgical outcomes by guiding intraoperative decision-making and optimizing patient care. Conclusions: Recent advancements in optical imaging techniques present valuable tools for monitoring the viability of DIEP flap reconstruction. NIRS, ICG fluorescence angiography, LSCI, HSI, DIRT, and SWIR offer a non- or minimal-invasive, real-time assessment of tissue perfusion and oxygenation, enabling accurate evaluation of flap viability. These modalities have the potential to enhance surgical outcomes by facilitating timely intervention in cases of compromised perfusion, thereby reducing the risk of flap complications. Incorporating optical imaging into clinical practice can provide surgeons with objective and quantitative data, assisting in informed decision-making for optimal patient care in DIEP flap reconstruction surgeries. Full article
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11 pages, 3165 KiB  
Article
Design of a Dispersive 1064 nm Fiber Probe Raman Imaging Spectrometer and Its Application to Human Bladder Resectates
by Juan David Muñoz-Bolaños, Tanveer Ahmed Shaik, Arkadiusz Miernik, Jürgen Popp and Christoph Krafft
Appl. Sci. 2024, 14(11), 4726; https://doi.org/10.3390/app14114726 - 30 May 2024
Viewed by 1572
Abstract
This study introduces a compact Raman spectrometer with a 1064 nm excitation laser coupled with a fiber probe and an inexpensive motorized stage, offering a promising alternative to widely used Raman imaging instruments with 785 nm excitation lasers. The benefits of 1064 nm [...] Read more.
This study introduces a compact Raman spectrometer with a 1064 nm excitation laser coupled with a fiber probe and an inexpensive motorized stage, offering a promising alternative to widely used Raman imaging instruments with 785 nm excitation lasers. The benefits of 1064 nm excitation for biomedical applications include further suppression of fluorescence background and deeper tissue penetration. The performance of the 1064 nm instrument in detecting cancer in human bladder resectates is demonstrated. Raman images with 1064 nm excitation were collected ex vivo from 10 human tumor and non-tumor bladder specimens, and the results are compared to previously published Raman images with 785 nm excitation. K-Means cluster (KMC) analysis is used after pre-processing to identify Raman signatures of control, tumor, necrosis, and lipid-rich tissues. Hierarchical cluster analysis (HCA) groups the KMC centroids of all specimens as input. The tools for data processing and hyperspectral analysis were compiled in an open-source Python library called SpectraMap (SpMap). In spite of lower spectral resolution, the 1064 nm Raman instrument can differentiate between tumor and non-tumor bladder tissues in a similar way to 785 nm Raman spectroscopy. These findings hold promise for future clinical hyperspectral Raman imaging, in particular for specimens with intense fluorescence background, e.g., kidney stones that are discussed as another widespread urological application. Full article
(This article belongs to the Special Issue Spectroscopic Techniques in Biomedical Imaging and Analysis)
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25 pages, 13271 KiB  
Article
Estimation of Biochemical Compounds in Tradescantia Leaves Using VIS-NIR-SWIR Hyperspectral and Chlorophyll a Fluorescence Sensors
by Renan Falcioni, Roney Berti de Oliveira, Marcelo Luiz Chicati, Werner Camargos Antunes, José Alexandre M. Demattê and Marcos Rafael Nanni
Remote Sens. 2024, 16(11), 1910; https://doi.org/10.3390/rs16111910 - 26 May 2024
Cited by 8 | Viewed by 2176
Abstract
An integrated approach that utilises hyperspectral and chlorophyll a fluorescence sensors to predict biochemical and biophysical parameters represents a new generation of remote-sensing research. The main objective of this study was to obtain a detailed spectral profile that correlates with plant physiology, thereby [...] Read more.
An integrated approach that utilises hyperspectral and chlorophyll a fluorescence sensors to predict biochemical and biophysical parameters represents a new generation of remote-sensing research. The main objective of this study was to obtain a detailed spectral profile that correlates with plant physiology, thereby enhancing our understanding and management of plant health, pigment profiles, and compound fingerprints. Leveraging datasets using non-imaging or passive hyperspectral and chlorophyll fluorescence sensors to collect data in Tradescantia species demonstrated significant differences in leaf characteristics with pigment concentrations and structural components. The main goal was to use principal component analysis (PCA) and partial least squares regression (PLS) methods to analyse the variations in their spectra. Our findings demonstrate a strong correlation between hyperspectral data and chlorophyll fluorescence, which is further supported by the development of hyperspectral vegetation indices (HVIs) that can accurately evaluate fingerprints and predict many compounds in variegated leaves. The higher the integrated analytical approach and its potential application in HVIs and fingerprints, the better the selection of wavelengths and sensor positions for rapid and accurate analysis of many different compounds in leaves. Nonetheless, limitations arose from the specificity of the data for the Tradescantia species, warranting further research across diverse plant types and compounds in the leaves. Overall, this study paves the way for more sustainable and informed agricultural practices through breakthroughs in the application of sensors to remote-sensing technologies. Full article
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