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14 pages, 935 KiB  
Systematic Review
The Global Prevalence of Bacillus spp. in Milk and Dairy Products: A Systematic Review and Meta-Analysis
by Tianmei Sun, Ran Wang, Yanan Sun, Xiaoxu Zhang, Chongtao Ge and Yixuan Li
Foods 2025, 14(15), 2599; https://doi.org/10.3390/foods14152599 - 24 Jul 2025
Viewed by 268
Abstract
The spoilage of dairy products and foodborne diseases caused by Bacillus spp. are important public concerns. The objective of this study was to estimate the global prevalence of Bacillus spp. in a range of milk and dairy products by using a meta-analysis of [...] Read more.
The spoilage of dairy products and foodborne diseases caused by Bacillus spp. are important public concerns. The objective of this study was to estimate the global prevalence of Bacillus spp. in a range of milk and dairy products by using a meta-analysis of literature data published between 2001 and 2023. A total of 3624 publications were collected from Web of Science and PubMed databases. Following the principles of systematic review, 417 sets of prevalence data were extracted from 142 eligible publications. Estimated by the random-effects model, the overall prevalence of Bacillus spp. in milk and dairy products was 11.8% (95% CI: 10.1–13.7%), with highly severe heterogeneity (94.8%). Subgroup analyses revealed substantial heterogeneity in Bacillus spp. prevalence according to geographical continents, sources of sampling, types of dairy products, microbial species, and detection methods. The prevalence of Bacillus spp. was highest in Asia (15.4%, 95% CI: 12.3–19.1%), lowest in Oceania (3.5%, 95% CI: 3.3–3.7%) and generally higher in developing versus developed countries. The prevalence of Bacillus spp. isolated from retail markets (16.1%, 95% CI: 13.0–19.7%) was higher than from farms (10.3%, 95% CI: 6.9–15.0%) or dairy plants (9.2%, 95% CI: 7.1–12.0%). This finding is likely attributable to its inherent characteristic of the resistant endospores and ubiquitous presence in the environment—Bacillus spp. can potentially cyclically contaminate farms, dairy products and human markets. Regarding the species distribution, Bacillus cereus presented a cosmopolitan distribution across all continents. The epidemic patterns of different Bacillus species vary depending on the sample sources. In addition, the detection method utilized also affected the reported prevalence of Bacillus spp. It is recommended to use molecular-based rapid detection methods to obtain a more accurate prevalence of Bacillus contamination. Therefore, a better understanding of variations in Bacillus spp. prevalence across different factors will enable competent authorities, industries, and other relevant stakeholders to tailor their interventions for effectively controlling Bacillus spp. in milk and dairy products. Full article
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40 pages, 3175 KiB  
Review
The Causative Agent of Soft Rot in Plants, the Phytopathogenic Bacterium Pectobacterium carotovorum subsp. carotovorum: A Brief Description and an Overview of Methods to Control It
by Alla I. Perfileva, Elena I. Strekalovskaya, Nadezhda V. Klushina, Igor V. Gorbenko and Konstantin V. Krutovsky
Agronomy 2025, 15(7), 1578; https://doi.org/10.3390/agronomy15071578 - 28 Jun 2025
Viewed by 682
Abstract
This review presents information obtained over the past 10 years on the methods to control the widespread worldwide phytopathogen Pectobacterium carotovorum subsp. carotovorum (Pcc). This bacterium is among the ten most dangerous phytopathogens; it affects a wide range of cultivated plants: [...] Read more.
This review presents information obtained over the past 10 years on the methods to control the widespread worldwide phytopathogen Pectobacterium carotovorum subsp. carotovorum (Pcc). This bacterium is among the ten most dangerous phytopathogens; it affects a wide range of cultivated plants: vegetables, ornamental and medicinal crops, both during vegetation and during the storage of fruits. Symptoms of Pcc damage include the wilting of plants, blackening of vessels on leaves, stems and petioles. At the flowering stage, the stem core gradually wilts and, starting from the root, the stem breaks and the plant dies. Pcc is a rod-shaped, non-capsule and endospore-forming facultative anaerobic Gram-negative bacterium with peritrichous flagellation. Pcc synthesizes bacteriocins—carocins. The main virulence factors of Pcc are the synthesis of N-acyl-homoserine lactone (AHL) and plant cell wall-degrading enzymes (PCWDEs) (pectinases, polygalacturonases, cellulases, and proteases). Diagnostic methods for this phytopathogen include polymerase chain reaction (PCR), loop-mediated isothermal amplification (LAMP), multilocus genotyping of strain-specific genes and detection of unique volatile organic compounds (VOCs). The main methods to control this microorganism include the use of various chemicals (acids, phenols, esters, salts, gases), plant extracts (from grasses, shrubs, trees, and algae), antagonistic bacteria (Bacillus, Pseudomonas, Streptomyces, and lactic acid bacteria), viruses (including a mixture of bacteriophages), and nanomaterials based on metals and chitosan. Full article
(This article belongs to the Section Pest and Disease Management)
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15 pages, 1145 KiB  
Perspective
Killing Two Crises with One Spark: Cold Plasma for Antimicrobial Resistance Mitigation and Wastewater Reuse
by José Gonçalves, João Pequeno, Israel Diaz, Davor Kržišnik, Jure Žigon and Tom Koritnik
Water 2025, 17(8), 1218; https://doi.org/10.3390/w17081218 - 18 Apr 2025
Viewed by 994
Abstract
Global water scarcity and antimicrobial resistance (AMR) represent two escalating crises that urgently demand integrated and effective solutions. While wastewater reuse is increasingly promoted as a strategy to alleviate water scarcity, conventional treatment processes often fail to eliminate persistent contaminants and antibiotic-resistant microorganisms. [...] Read more.
Global water scarcity and antimicrobial resistance (AMR) represent two escalating crises that urgently demand integrated and effective solutions. While wastewater reuse is increasingly promoted as a strategy to alleviate water scarcity, conventional treatment processes often fail to eliminate persistent contaminants and antibiotic-resistant microorganisms. Cold plasma (CP), a non-thermal advanced oxidation process, has demonstrated the strong potential to simultaneously inactivate pathogens and degrade micropollutants. CP generates a diverse mix of reactive oxygen and nitrogen species (ROS and RNS), as well as UV photons and charged particles, capable of breaking down complex contaminants and inducing irreversible damage to microbial cells. Laboratory studies have reported bacterial log reductions ranging from 1 to >8–9 log10, with Gram-negative species such as E. coli and Pseudomonas aeruginosa showing higher susceptibility than Gram-positive bacteria. The inactivation of endospores and mixed-species biofilms has also been achieved under optimized CP conditions. Viral inactivation studies, including MS2 bacteriophage and norovirus surrogates, have demonstrated reductions >99.99%, with exposure times as short as 0.12 s. CP has further shown the capacity to degrade antibiotic residues such as ciprofloxacin and sulfamethoxazole by >90% and to reduce ARGs (e.g., bla, sul, and tet) in hospital wastewater. This perspective critically examines the mechanisms and current applications of CP in wastewater treatment, identifies the operational and scalability challenges, and outlines a research agenda for integrating CP into future water reuse frameworks targeting AMR mitigation and sustainable water management. Full article
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9 pages, 1326 KiB  
Article
Biochemical Features of the Cry3A Toxin of Bacillus thuringiensis subsp. tenebrionis and Its Toxicity to the Red Imported Fire Ant Solenopsis invicta
by Lee A. Bulla
Microorganisms 2025, 13(2), 371; https://doi.org/10.3390/microorganisms13020371 - 8 Feb 2025
Viewed by 802
Abstract
Bioinsecticides based on the bacterium Bacillus thuringiensis (Bt) are widely used as safe alternatives to chemical insecticides. The insecticidal activity of Bt is occasioned by a protein toxin contained in parasporal crystals (Cry proteins) that are synthesized and laid down alongside the endospore [...] Read more.
Bioinsecticides based on the bacterium Bacillus thuringiensis (Bt) are widely used as safe alternatives to chemical insecticides. The insecticidal activity of Bt is occasioned by a protein toxin contained in parasporal crystals (Cry proteins) that are synthesized and laid down alongside the endospore during sporulation. The specificity of toxin action is associated with the subspecies of Bt and the individual Cry toxins they produce. Although a number of commercial Bt formulations are available to control moths, mosquitoes and beetles, there are none that control the red imported fire ant (RIFA) Solenopsis invicta. The present report is the first to describe the insecticidal activity of the Cry3A protein toxin, produced by Bacillus thuringiensis subsp. tenebrionis (Btt), against the RIFA as well as some of its key biochemical properties. Currently available commercial formulations of Btt are designed to control beetles such as the Colorado potato beetle, not ants. The Cry3A toxin (MW ~66 kDa) is embedded in a larger polypeptide (protoxin, MW ~73 kDa) and is released from the toxin enzymatically. Once activated, it can be administered to the RIFA as a soluble protein that most likely binds to an attendant receptor in the epithelial cells that line the wall of the larval ventriculus, killing the insect. Properly customized, the Cry3A toxin is a potential candidate for fire ant control. Full article
(This article belongs to the Special Issue Advances in Microbial Synthetic Biology)
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15 pages, 3304 KiB  
Article
Exploring the Diversity of Some Microorganisms from Lake Al-Asfar, KSA: The Good, the Bad, and the Pathogenic
by Fatimah Al Tammar, Nermin El Semary, Munirah F. Aldayel, Duaa Althumairy and Gowhara Alfayad
Diversity 2025, 17(1), 37; https://doi.org/10.3390/d17010037 - 3 Jan 2025
Viewed by 1827
Abstract
Background: Lake Al-Asfar in KSA was used as a sink for wastewater for decades and suffered from pollution. The lake is a habitat to different microbial species that play important ecological roles, some of which are good, and some are bad and even [...] Read more.
Background: Lake Al-Asfar in KSA was used as a sink for wastewater for decades and suffered from pollution. The lake is a habitat to different microbial species that play important ecological roles, some of which are good, and some are bad and even pathogenic. In a previous investigation, algal-bacteria consortia have proven to be beneficial in bioremediating heavy metals and hydrocarbons in Lake Al-Asfar. The identity of algae was revealed to be Chlorella sp. and Geitlernema sp. in the consortia. The identity of the heterotrophic bacterial partners, on the other hand, awaits investigation and is addressed in the present research. On the other hand, investigating the diversity of Protozoa and parasites is also tackled as they represent indicators of pollution. Some pose serious health risks, but some of them also contribute to reducing some of the pollution levels. Methods: Bacteria associated with algae were isolated in pure form. The polyphasic approach was used to identify bacterial samples, including staining procedures, the use of Vitek technology, and scanning electron microscopy. This information was integrated with structure information such as capsule presence, endospore formation, and wall characteristics indicated by Gram stain. With regard to protists including Protozoa and parasites, Light microscopy and taxonomic books of identification were used to reveal their identity. Results: three main bacterial strains belonging to the following genera were identified: Sphingomonas, Rhizobium, and Enterbacter. The last is potentially pathogenic and poses health risks to Lake goers. Rhizobium, on the other hand, is most likely found in the lake from agricultural wastewater and is a nitrogen fixer that increases the fertility of crops. The first bacterium is associated with special lipid metabolism and is hardly pathogenic. Several diverse microscopic forms of protists, mainly Protozoa and parasites, were identified, which included Entamoeba histolytica, Balantidium coli, Ascaris lumbricoides, Amoeba, Paramecium, Euglena, and Gymnodinium sp. Discussion: The three types of bacteria identified have metabolic activities that are associated with bioremediation. On the other hand, protists, including Protozoa and parasites, are regular members of wastewater communities and help in scavenging solid wastes, but they cause hazards such as secreting toxins, causing disease, and impacting the bioremediation potential by feeding on beneficial bioremediating algae and bacteria. This is part of the wastewater ecosystem dynamics, but efforts must be exerted to minimize, if not completely eliminate, pathogenic parasites in order to maximize the growth of algal consortia. Conclusions: Vitek technology is an emerging less time- and effort-consuming fast technology for identifying bacteria. Bacteria identified have significant ecological bioremediating roles, together with their algal partners, but some pose pathogenic risks. Identifying co-inhabitants like protists and parasites helps to shed light on their impact on one another and pave the way for restoration efforts that minimize the biological hazards and maximize the use of beneficial local microorganisms. Full article
(This article belongs to the Special Issue Microbial Diversity and Culture Collections Hotspots in 2024)
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18 pages, 2274 KiB  
Review
Application of Invasive Bacteria for the Delivery of Anti-Cancer Therapeutics
by Rasaq Akinsola and Kumaran Narayanan
Therapeutics 2024, 1(2), 124-141; https://doi.org/10.3390/therapeutics1020011 - 20 Dec 2024
Cited by 1 | Viewed by 2150
Abstract
Bacterial vectors for biomolecule delivery to targeted organelles, facilitating temporary or continuous protein production, have emerged as a promising approach for treating acquired and inherited diseases. This method offers a selective cancer eradication and targeting strategy with minimal side effects. Bacterial vectors provide [...] Read more.
Bacterial vectors for biomolecule delivery to targeted organelles, facilitating temporary or continuous protein production, have emerged as a promising approach for treating acquired and inherited diseases. This method offers a selective cancer eradication and targeting strategy with minimal side effects. Bacterial vectors provide an alternative to viral gene delivery, given their capacity to deliver large genetic materials while inducing minimal immunogenicity and cytotoxicity. Bacteria such as Bifidobacterium, Salmonella, Clostridium, and Streptococcus have demonstrated potential for tumor-targeted biomolecule delivery or serve as oncolytic bacteria. These vectors have also been used to transfer and amplify genes encoding biomolecules such as pro-drug-converting enzymes, toxins, angiogenesis inhibitors, and cytokines. The microenvironment of necrotic tumors offers a unique opportunity for targeted therapy with the non-pathogenic anaerobic bacterium. For example, Clostridium sporogenes can germinate selectively in the necrotic regions upon injection as endospores, which helps to enhance the specificity of Clostridium sporogenes, resulting in tumor-specific colonization. Also, E. coli and Salmonella sp. can be capacitated with a hypoxic sensing promotor gene for specificity delivery into the core region of solid tumors. The uniqueness of the tumor microenvironment, including hypoxia, immunosuppression, metabolite deficiency or enrichment, and necrosis, selectively enables bacteria in the tumor. Combining traditional cancer therapy with bacterial therapy will significantly complement and cover the limitations of other treatments. This review provides an overview of the use of the bacteria vector in cancer therapy, discussing strategies to maximize delivery efficiency and address potential challenges. In this review, we discuss the potential of bacteria vectors as anti-cancer therapeutics while focusing on therapeutic delivery strategies. We highlight the complementary use of bacteria therapy with other cancer therapies and the mechanism of bacteria cancer immunotherapy with limitations and perspectives for future use. Full article
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20 pages, 839 KiB  
Article
Bacterial Agents for Biocontrol of American Foulbrood (AFB) of Larvae Honey Bee
by Piotr Nowotnik, Paweł Chorbiński, Paweł Migdał and Bogusław Górski
Microbiol. Res. 2024, 15(4), 2394-2413; https://doi.org/10.3390/microbiolres15040161 - 24 Nov 2024
Viewed by 1749
Abstract
Bee colonies are constantly threatened by a bacterial larvae disease called American foulbrood, caused by the Gram-positive bacterium Paenibacillus larvae. This is a highly specialized pathogen with only one established host, the honey bee larvae. The current state of legislation throughout the [...] Read more.
Bee colonies are constantly threatened by a bacterial larvae disease called American foulbrood, caused by the Gram-positive bacterium Paenibacillus larvae. This is a highly specialized pathogen with only one established host, the honey bee larvae. The current state of legislation throughout the European Union prevents the inclusion of pharmacotherapy treatment, and the only control is based on the physical elimination of infected colonies upon veterinary orders. The purpose of this study was to investigate the antimicrobial activity of selected bacteria with proven probiotic potential with typical characteristics meeting the definition of a probiotic that could reduce the American foulbrood pressure by promoting the development of the larvae microbiome that competes with and blocks the excessive proliferation and production of P. larvae endospores. The antimicrobial activity of inoculants of the following selected strains was studied: Bacillus pumilus, Bacillus licheniformis, Streptomyces narbonensis, Lysinibacillus fusiformis, Levilactobacillus brevis, Bacillus megaterium against Paenibacillus larvae ATCC 9545 (formerly Paenibacillus larvae sub sp. larvae), and Paenibacillus larvae CCUG 48973. Analyses were performed by the well diffusion method according to EUCAST standards (clinical breakpoints and dosing of antibiotics) with modifications due to the specificity of the bacteria used. The largest zone of growth inhibition of P. larvae was confirmed with S. narbonensis, B. licheniformis, and B. megaterium, and medium activity was observed with L. brevis and B. pumilus. Negligible activity was shown by L. fusiformis. Differences were noticed in the resistance of indicator strains of P. larvae and between the media and carriers used. Full article
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11 pages, 2585 KiB  
Article
Production of Bacillus thuringiensis in “On Farm” Biofactories Is So Efficient Like a Commercial Product to Control Spodoptera frugiperda (Lepidoptera: Noctuidae)
by Ítalo Alves Freire, Izabela Nunes do Nascimento, Gabriela Teodoro Rocha, Pedro de Luca Buffon dos Santos, Breno Béda dos Reis Cunha, Antônia Débora Camila de Lima Ferreira, Flávia Melo Moreira, Marcelo Tavares de Castro and Rose Gomes Monnerat
Agronomy 2024, 14(12), 2776; https://doi.org/10.3390/agronomy14122776 - 22 Nov 2024
Cited by 1 | Viewed by 3442
Abstract
The biological control of pests and diseases in Brazilian crops has increased substantially, and the large-scale multiplication of microorganisms, a practice known as “On Farm”, is now being used by farmers. In this study, we aimed to produce and evaluate the quality of [...] Read more.
The biological control of pests and diseases in Brazilian crops has increased substantially, and the large-scale multiplication of microorganisms, a practice known as “On Farm”, is now being used by farmers. In this study, we aimed to produce and evaluate the quality of Bacillus thuringiensis var. kurstaki strain HD-1 in “On Farm” biofactories under three aeration rates (0.2, 0.5 and 0.8 air volume/volume of medium/min) (vvm), with regard to the production of endospores and crystals, contaminants, and to calculate the lethal concentration 50 (LC50) against Spodoptera frugiperda larvae. After 48 h, the number of viable spores differed significantly between 0.2 (5.75 × 107), 0.5 (1.33 × 108) and 0.8 (5.40 × 108) vvm. The culture media did not show enough selectivity. A significant difference was observed for the LC50 calculated for 0.2 vvm (7.06 × 104), 0.5 vvm (2.07 × 104), 0.8 vvm (4.40 × 103), and the commercial product (3.79 × 103). The results of this study showed that the aeration rate affects the multiplication efficiency of B. thuringiensis in biofactories. In addition, post-process quality control analyses found no pathogenic contamination, reinforcing the safety and viability of the production process. The 0.8 vvm rate resulted in the greater production of spores and crystals, and statistically similar results to the commercial product for the control of S. frugiperda. Full article
(This article belongs to the Special Issue Biological Pest Control in Agroecosystems)
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15 pages, 5275 KiB  
Article
Flower-Shaped PCR Scaffold-Based Lateral Flow Bioassay for Bacillus cereus Endospores Detection
by Jingjing Tian, Zhuyi Zhang, Yaning Shi, Zichao Wu, Yuting Shao, Limin Wang, Xinglian Xu and Zhihong Xin
Int. J. Mol. Sci. 2024, 25(20), 11286; https://doi.org/10.3390/ijms252011286 - 20 Oct 2024
Cited by 1 | Viewed by 1573
Abstract
Bacillus cereus, a foodborne pathogen, produces resilient endospores that are challenging to detect with conventional methods. This study presents a novel Flower-Shaped PCR Scaffold-based Lateral Flow Biosensor (FSPCRS-LFB), which employs an aptamer-integrated PCR scaffold as capture probes, replacing the traditional streptavidin-biotin (SA-Bio) [...] Read more.
Bacillus cereus, a foodborne pathogen, produces resilient endospores that are challenging to detect with conventional methods. This study presents a novel Flower-Shaped PCR Scaffold-based Lateral Flow Biosensor (FSPCRS-LFB), which employs an aptamer-integrated PCR scaffold as capture probes, replacing the traditional streptavidin-biotin (SA-Bio) approach. The FSPCRS-LFB demonstrates high sensitivity and cost-efficiency in detecting B. cereus endospores, with a limit of detection (LOD) of 4.57 endospores/mL a visual LOD of 102 endospores/mL, and a LOD of 6.78 CFU/mL for endospore-cell mixtures. In chicken and tea samples, the platform achieved LODs of 74.5 and 52.8 endospores/mL, respectively, with recovery rates of 82.19% to 97.88%. Compared to existing methods, the FSPCRS-LFB offers a 3.7-fold increase in sensitivity while reducing costs by 26% over the SA-Bio strategy and 87.5% over rolling circle amplification (RCA). This biosensor provides a rapid, sensitive and cost-effective solution for point-of-care testing (POCT) of B. cereus endospores, expanding detection capabilities and offering novel approaches for pathogen detection. Full article
(This article belongs to the Special Issue Whole-Cell System and Synthetic Biology)
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16 pages, 6508 KiB  
Article
RNA-Seq Analysis and Candidate Gene Mining of Gossypium hirsutum Stressed by Verticillium dahliae Cultured at Different Temperatures
by Ni Yang, Zhaolong Gong, Yajun Liang, Shiwei Geng, Fenglei Sun, Xueyuan Li, Shuaishuai Qian, Chengxia Lai, Mayila Yusuyin, Junduo Wang and Juyun Zheng
Plants 2024, 13(19), 2688; https://doi.org/10.3390/plants13192688 - 25 Sep 2024
Cited by 1 | Viewed by 1061
Abstract
The occurrence and spread of Verticillium dahliae (V. dahliae) in cotton depends on the combined effects of pathogens, host plants, and the environment, among which temperature is one of the most important environmental factors. Studying how temperature impacts the occurrence of [...] Read more.
The occurrence and spread of Verticillium dahliae (V. dahliae) in cotton depends on the combined effects of pathogens, host plants, and the environment, among which temperature is one of the most important environmental factors. Studying how temperature impacts the occurrence of V. dahliae in cotton and the mechanisms governing host defense responses is crucial for disease prevention and control. Understanding the dual effects of temperature on both pathogens and hosts can provide valuable insights for developing effective strategies to manage this destructive fungal infection in cotton. This study was based on the deciduous V. dahliae Vd-3. Through cultivation at different temperatures, Vd-3 formed the most microsclerotia and had the largest colony diameter at 25 °C. Endospore toxins were extracted, and 48 h was determined to be the best pathogenic time point for endotoxins to infect cotton leaves through a chlorophyll fluorescence imaging system and phenotypic evaluation. Transcriptome sequencing was performed on cotton leaves infected with Vd-3 endotoxins for 48 h at different culture temperatures. A total of 34,955 differentially expressed genes (DEGs) were identified between each temperature and CK (no pathogen inoculation), including 17,422 common DEGs. The results of the enrichment analysis revealed that all the DEGs were involved mainly in photosynthesis and sugar metabolism. Among the 34,955 DEGs, genes in the biosynthesis and signal transduction pathways of jasmonic acid (JA), salicylic acid (SA), and ethylene (ET) were identified, and their expression patterns were determined. A total of 5652 unique DEGs were clustered into six clusters using the k-means clustering algorithm, and the functions and main transcription factors (TFs) of each cluster were subsequently annotated. In addition, we constructed a gene regulatory network via weighted correlation network analysis (WGCNA) and identified twelve key genes related to cotton defense against V. dahliae at different temperatures, including four genes encoding transcription factors. These findings provide a theoretical foundation for investigating temperature regulation in V. dahliae infecting cotton and introduce novel genetic resources for enhancing resistance to this disease in cotton plants. Full article
(This article belongs to the Section Plant Genetics, Genomics and Biotechnology)
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14 pages, 5592 KiB  
Article
Studies of Fluorescence Lifetimes of Biological Warfare Agents Simulants and Interferers Using the Stroboscopic Method
by Miron Kaliszewski, Mirosław Kwaśny, Aneta Bombalska, Maksymilian Włodarski, Elżbieta Anna Trafny and Krzysztof Kopczyński
Appl. Sci. 2024, 14(16), 7332; https://doi.org/10.3390/app14167332 - 20 Aug 2024
Viewed by 1118
Abstract
The fluorescence decays (FDs) of 27 dried vegetative bacteria, bacterial endospores, fungi, and pollens were measured and determined using a stroboscopic technique. Pulsed nanosecond LED sources, emitting light at wavelengths of 280, 340, and 460 nm, were used for the excitation of biological [...] Read more.
The fluorescence decays (FDs) of 27 dried vegetative bacteria, bacterial endospores, fungi, and pollens were measured and determined using a stroboscopic technique. Pulsed nanosecond LED sources, emitting light at wavelengths of 280, 340, and 460 nm, were used for the excitation of biological samples. The implicit advantages of the stroboscopic method are high sensitivity, speed of a single measurement (10–60 s), miniaturization of the device, and relatively low price compared to the typical lifetime methods. The Principal Component Analysis (PCA) method was used for chemometric analysis. It was found that the excitation at 340, 460, and data merged from 340 and 460 nm effectively separate individual groups of biological substances. These findings provide evidence that fluorescence decay data may allow the classification of the biological samples, and the FDs measurement method can be complementary to the study of fluorescence spectra. Full article
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21 pages, 2832 KiB  
Article
The Antibacterial Efficacy of Far-UVC Light: A Combined-Method Study Exploring the Effects of Experimental and Bacterial Variables on Dose–Response
by David T. Griffin, Terence Gourlay and Michelle Maclean
Pathogens 2024, 13(8), 698; https://doi.org/10.3390/pathogens13080698 - 19 Aug 2024
Cited by 4 | Viewed by 2567
Abstract
Far-ultraviolet C light, with a wavelength of 200–230 nm, has demonstrated broad-spectrum germicidal efficacy. However, due to increased interest in its use as an alternative antimicrobial, further knowledge about its fundamental bactericidal efficacy is required. This study had two objectives. Firstly, it investigated [...] Read more.
Far-ultraviolet C light, with a wavelength of 200–230 nm, has demonstrated broad-spectrum germicidal efficacy. However, due to increased interest in its use as an alternative antimicrobial, further knowledge about its fundamental bactericidal efficacy is required. This study had two objectives. Firstly, it investigated experimentally the Far-UVC dose–response of common bacteria suspended at various cell densities in transparent buffer, ensuring no influence from photosensitive suspending media. Increasing doses of Far-UVC were delivered to Enterococcus faecium, Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus in PBS at 101, 102, 103, 105 and 107 CFU·mL−1, with surviving colony-forming units enumerated (n ≥ 3). Secondly, through a systematised literature review, this work sought to explore the impact of genus/species, Gram type, cell form, cell density and irradiance on dose–response. The screening of 483 publications was performed with 25 included in the study. Data for 30 species were collated, analysed and compared with the experimental results. Overall, Gram-positive species showed greater resilience to Far-UVC than Gram-negative; some inter-species and inter-genera differences in resilience were identified; endospores were more resilient than vegetative cells; the results suggested that inactivation efficiency may decrease as cell density increases; and no significant correlation was identified between irradiance and bactericidal dose effect. In conclusion, this study has shown Far-UVC light to be an effective decontamination tool against a vast range of bacterial vegetative cells and endospores. Full article
(This article belongs to the Section Epidemiology of Infectious Diseases)
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18 pages, 1543 KiB  
Review
Emerging Diagnostics in Clostridioides difficile Infection
by John P. Hulme
Int. J. Mol. Sci. 2024, 25(16), 8672; https://doi.org/10.3390/ijms25168672 - 8 Aug 2024
Cited by 2 | Viewed by 3003
Abstract
Clostridioides difficile detection in community settings is time-intensive, resulting in delays in diagnosing and quarantining infected individuals. However, with the advent of semi-automated devices and improved algorithms in recent decades, the ability to discern CDI infection from asymptomatic carriage has significantly improved. This, [...] Read more.
Clostridioides difficile detection in community settings is time-intensive, resulting in delays in diagnosing and quarantining infected individuals. However, with the advent of semi-automated devices and improved algorithms in recent decades, the ability to discern CDI infection from asymptomatic carriage has significantly improved. This, in turn, has led to efficiently regulated monitoring systems, further reducing endemic risk, with recent concerns regarding a possible surge in hospital-acquired Clostridioides difficile infections post-COVID failing to materialize. This review highlights established and emerging technologies used to detect community-acquired Clostridioides difficile in research and clinical settings. Full article
(This article belongs to the Special Issue Application of Advanced Molecular Methods to Study Infections 2.0)
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15 pages, 5311 KiB  
Article
Diversity of Endophytic Fungi and Bacteria Inhabiting the Roots of the Woodland Grass, Festuca gigantea (Poaceae)
by Izolda Pašakinskienė, Violeta Stakelienė, Saulė Matijošiūtė and Justas Martūnas
Diversity 2024, 16(8), 453; https://doi.org/10.3390/d16080453 - 1 Aug 2024
Cited by 4 | Viewed by 1799
Abstract
We studied the occurrence of endophytic fungi and bacteria in the roots of F. gigantea, a woodland perennial grass common throughout Europe and temperate Asia. The taxonomic assignment was carried out according to the isolate’s colony and cytological species morphotype characteristics and [...] Read more.
We studied the occurrence of endophytic fungi and bacteria in the roots of F. gigantea, a woodland perennial grass common throughout Europe and temperate Asia. The taxonomic assignment was carried out according to the isolate’s colony and cytological species morphotype characteristics and confirmed by the assessment of the standard DNA sequences, ITS, RPB2, SSU, and TEF1-a for fungi and 16S rDNA for bacteria. Our study has shown that F. gigantea roots are the habitat to a wide range of fungi and bacteria. The occurrence of fungal structures was determined in ~40% of the roots examined by Trypan Blue staining. In a surface-sterile root-cutting culture on PDA medium, we obtained isolates of six endophytic fungi species: four members of Ascomycota—Alternaria alternata, Cadophora fastigiata, Chaetomium funicola, and Microdochium bolleyi—and two of Basidiomycota—Coprinellus sp. and Sistotrema brinkmannii. In addition, we report bacteria co-occurring endophytically in the roots of this grass. The Firmicutes group was the most prevalent, consisting of four Gram-positive, endospore-forming bacteria taxa. The isolates were identified as Bacillus pumilus, Bacillus sp., Lysinibacillus sp., and Priestia aryabhattai. Moreover, two Gram-negative bacteria were detected—Kosakonia sp. (Proteobacteria) and Pedobacter sp. (Bacteroidetes). Thus, applying the isolate-culture approach, we identified a set of microorganisms in the roots of a typical grass native to the deciduous forest floor. The functional roles of these endophytes are diverse, and many of them, saprotrophs and decomposers of wood and plant debris, are linked to the decomposition of organic matter. This is the first detailed report on fungal and bacterial endophytes inhabiting the roots of F. gigantea. This study fills in a research gap on endophytes associated with the below-ground parts of Festuca spp., hitherto extensively studied for Epichloë/Neotyphodium associations in their foliar parts. Full article
(This article belongs to the Special Issue Microbial Diversity and Culture Collections Hotspots in 2024)
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13 pages, 6804 KiB  
Article
Design of a Device Based on an LED Matrix for Water Sterilization
by Sara González-Fernández, Noelia Blanco-Agudín, Ana L. Martínez, Sergio Meana, Nerea Fernández and Luis M. Quirós
Appl. Sci. 2024, 14(13), 5635; https://doi.org/10.3390/app14135635 - 27 Jun 2024
Viewed by 1145
Abstract
The scarcity of potable water emphasizes the urgent need to develop and implement more sustainable treatment technologies, considering both energy consumption and environmental impact. These technologies require effective disinfection systems that avoid the use of chemicals. Innovations in this area, utilizing UV-LED technology, [...] Read more.
The scarcity of potable water emphasizes the urgent need to develop and implement more sustainable treatment technologies, considering both energy consumption and environmental impact. These technologies require effective disinfection systems that avoid the use of chemicals. Innovations in this area, utilizing UV-LED technology, can significantly improve efficiency, reduce costs, and mitigate environmental impacts. This study aimed to evaluate the antimicrobial properties of various encapsulated UV light-emitting diodes (LEDs) to identify the most suitable candidate for constructing an LED array capable of disinfecting large volumes of water. Different devices from various manufacturers, with differing costs and wavelengths, were examined, leading to the selection of the optimal candidate (LED 2) based on its antimicrobial effectiveness and cost-effectiveness. The impact of parameters such as bacterial concentration, sample volume, exposure time, and conditions on disinfection capacity was thoroughly investigated. Exposure to LED 2 resulted in substantial reductions in the viability of bacteria and yeast, demonstrating efficacy even against Clostridium perfringens endospores. Subsequently, an LED array was developed based on these findings and rigorously evaluated for efficacy, confirming its effectiveness as an efficient and environmentally friendly water treatment device. Full article
(This article belongs to the Section Chemical and Molecular Sciences)
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