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Keywords = elementome

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25 pages, 3518 KiB  
Article
Macro, Trace and Toxic Element Composition in Liver and Meat of Broiler Chicken Associated with Cecal Microbiome Community
by Dmitry Deryabin, Dianna Kosyan, Ludmila Vlasenko, Christina Lazebnik, Alexander Zatevalov, Ilshat Karimov and Galimzhan Duskaev
Biology 2024, 13(12), 975; https://doi.org/10.3390/biology13120975 - 26 Nov 2024
Viewed by 936
Abstract
The current study presents a meta-analysis of the detailed relationship between the composition of 25 essential and toxic elements in chicken tissues examined by ICP-MS and the gut microbial community analyzed using NGS techniques. The examination of chicken liver and meat revealed typical [...] Read more.
The current study presents a meta-analysis of the detailed relationship between the composition of 25 essential and toxic elements in chicken tissues examined by ICP-MS and the gut microbial community analyzed using NGS techniques. The examination of chicken liver and meat revealed typical elemental compositions, called the “elementomes”. The α-elementomes showed high contents of macro elements (Na, K, Mg, Ca, P), majority trace elements (Sr, Se, Mn, Fe, Co, Cu, Zn) and some toxic elements (B, Pb, Ni, Cd); β-elementomes indicated accumulation of Si, V and Cr; γ-elementomes indicated accumulation of Al, As and Hg. Characterization of the microbiomes’ structure showed two distinct enterotypes, designated “microbiome patterns”; the first was enriched in the phylum Bacteroidota, and the second was dominated by Bacillota and coupled with members of the phyla Actinomycetota, Cyanobacteriota and Thermodesulfobacteriota. A comparison of elementomes and microbiomes demonstrated a clear correspondence between the α- and γ-elementomes belonging to the Bacteroidota-enriched pattern, while the β-elementome was predominantly found in chicken groups belonging to the Bacillota + ACT pattern. This insight proposes a novel strategy to improve deficiency or excess of certain elements in the host by gut microbiome modulation, which needs to be verified with further in vivo experiments. Full article
(This article belongs to the Special Issue Gut Microbiome in Health and Disease (2nd Edition))
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15 pages, 2010 KiB  
Article
Exposure to Molybdate Results in Metabolic Disorder: An Integrated Study of the Urine Elementome and Serum Metabolome in Mice
by Kun Zhou, Miaomiao Tang, Wei Zhang, Yanling Chen, Yusheng Guan, Rui Huang, Jiawei Duan, Zibo Liu, Xiaoming Ji, Yingtong Jiang, Yanhui Hu, Xiaoling Zhang, Jingjing Zhou and Minjian Chen
Toxics 2024, 12(4), 288; https://doi.org/10.3390/toxics12040288 - 14 Apr 2024
Cited by 3 | Viewed by 2430
Abstract
The increasing use of molybdate has raised concerns about its potential toxicity in humans. However, the potential toxicity of molybdate under the current level of human exposure remains largely unknown. Endogenous metabolic alterations that are caused in humans by environmental exposure to pollutants [...] Read more.
The increasing use of molybdate has raised concerns about its potential toxicity in humans. However, the potential toxicity of molybdate under the current level of human exposure remains largely unknown. Endogenous metabolic alterations that are caused in humans by environmental exposure to pollutants are associated with the occurrence and progression of many diseases. This study exposed eight-week-old male C57 mice to sodium molybdate at doses relevant to humans (0.01 and 1 mg/kg/day) for eight weeks. Inductively coupled plasma mass spectrometry (ICP-MS) and ultra-performance liquid chromatography tandem mass spectrometry (UPLC-MS) were utilized to assess changes in urine element levels and serum metabolites in mice, respectively. A total of 838 subjects from the NHANES 2017–2018 population database were also included in our study to verify the associations between molybdenum and cadmium found in mice. Analysis of the metabolome in mice revealed that four metabolites in blood serum exhibited significant changes, including 5-aminolevulinic acid, glycolic acid, l-acetylcarnitine, and 2,3-dihydroxypropyl octanoate. Analysis of the elementome revealed a significant increase in urine levels of cadmium after molybdate exposure in mice. Notably, molybdenum also showed a positive correlation with cadmium in humans from the NHANES database. Further analysis identified a positive correlation between cadmium and 2,3-dihydroxypropyl octanoate in mice. In conclusion, these findings suggest that molybdate exposure disrupted amino acid and lipid metabolism, which may be partially mediated by molybdate-altered cadmium levels. The integration of elementome and metabolome data provides sensitive information on molybdate-induced metabolic disorders and associated toxicities at levels relevant to human exposure. Full article
(This article belongs to the Special Issue State-of-the-Art Environmental Chemicals Exposomics and Metabolomics)
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19 pages, 3921 KiB  
Article
Multi-Chemical Omics Analysis of the Symbiodiniaceae Durusdinium trenchii under Heat Stress
by Jennifer L. Matthews, Maiken Ueland, Natasha Bartels, Caitlin A. Lawson, Thomas E. Lockwood, Yida Wu and Emma F. Camp
Microorganisms 2024, 12(2), 317; https://doi.org/10.3390/microorganisms12020317 - 2 Feb 2024
Cited by 3 | Viewed by 2215
Abstract
The urgency of responding to climate change for corals necessitates the exploration of innovative methods to swiftly enhance our understanding of crucial processes. In this study, we employ an integrated chemical omics approach, combining elementomics, metabolomics, and volatilomics methodologies to unravel the biochemical [...] Read more.
The urgency of responding to climate change for corals necessitates the exploration of innovative methods to swiftly enhance our understanding of crucial processes. In this study, we employ an integrated chemical omics approach, combining elementomics, metabolomics, and volatilomics methodologies to unravel the biochemical pathways associated with the thermal response of the coral symbiont, Symbiodiniaceae Durusdinium trenchii. We outline the complimentary sampling approaches and discuss the standardised data corrections used to allow data integration and comparability. Our findings highlight the efficacy of individual methods in discerning differences in the biochemical response of D. trenchii under both control and stress-inducing temperatures. However, a deeper insight emerges when these methods are integrated, offering a more comprehensive understanding, particularly regarding oxidative stress pathways. Employing correlation network analysis enhanced the interpretation of volatile data, shedding light on the potential metabolic origins of volatiles with undescribed functions and presenting promising candidates for further exploration. Elementomics proves to be less straightforward to integrate, likely due to no net change in elements but rather elements being repurposed across compounds. The independent and integrated data from this study informs future omic profiling studies and recommends candidates for targeted research beyond Symbiodiniaceae biology. This study highlights the pivotal role of omic integration in advancing our knowledge, addressing critical gaps, and guiding future research directions in the context of climate change and coral reef preservation. Full article
(This article belongs to the Special Issue Advances in Investigations of the Coral Holobiont)
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15 pages, 2087 KiB  
Article
Ecophysiological Differentiation among Two Resurrection Ferns and Their Allopolyploid Derivative
by Luis G. Quintanilla, Ismael Aranda, María José Clemente-Moreno, Joan Pons-Perpinyà and Jorge Gago
Plants 2023, 12(7), 1529; https://doi.org/10.3390/plants12071529 - 1 Apr 2023
Cited by 4 | Viewed by 2246
Abstract
Theoretically, the coexistence of diploids and related polyploids is constrained by reproductive and competitive mechanisms. Although niche differentiation can explain the commonly observed co-occurrence of cytotypes, the underlying ecophysiological differentiation among cytotypes has hardly been studied. We compared the leaf functional traits of [...] Read more.
Theoretically, the coexistence of diploids and related polyploids is constrained by reproductive and competitive mechanisms. Although niche differentiation can explain the commonly observed co-occurrence of cytotypes, the underlying ecophysiological differentiation among cytotypes has hardly been studied. We compared the leaf functional traits of the allotetraploid resurrection fern Oeosporangium tinaei (HHPP) and its diploid parents, O. hispanicum (HH) and O. pteridioides (PP), coexisting in the same location. Our experimental results showed that all three species can recover physiological status after severe leaf dehydration, which confirms their ‘resurrection’ ability. However, compared with PP, HH had much higher investment per unit area of light-capturing surface, lower carbon assimilation rate per unit mass for the same midday water potential, higher non-enzymatic antioxidant capacity, higher carbon content, and lower contents of nitrogen, phosphorus, and other macronutrients. These traits allow HH to live in microhabitats with less availability of water and nutrients (rock crevices) and to have a greater capacity for resurrection. The higher assimilation capacity and lower antioxidant capacity of PP explain its more humid and nutrient-rich microhabitats (shallow soils). HHPP traits were mostly intermediate between those of HH and PP, and they allow the allotetraploid to occupy the free niche space left by the diploids. Full article
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22 pages, 3414 KiB  
Article
Elementome of Endemic Dolomitic Flora: Pterocephalus spathulatus (Lag.) Coult
by Encarna Merlo, Antonio J. Mendoza-Fernández, Esteban Salmerón-Sánchez, Fabián Martínez-Hernández, Andrea Ortiz-Úbeda and Juan Mota
Land 2021, 10(11), 1253; https://doi.org/10.3390/land10111253 - 16 Nov 2021
Cited by 1 | Viewed by 3077
Abstract
Unusual dolomite substrates present a phenomenon known as dolomitophily, which refers to the specificity of the flora that grows on them. Within the dolomitic flora, one of the most widespread plants in Spain is the characteristic species Pterocephalus spathulatus (Lag.) Coult., which forms [...] Read more.
Unusual dolomite substrates present a phenomenon known as dolomitophily, which refers to the specificity of the flora that grows on them. Within the dolomitic flora, one of the most widespread plants in Spain is the characteristic species Pterocephalus spathulatus (Lag.) Coult., which forms whitish prostrate thymes. The present study focused on the knowledge about the ionome (or elementome) of a characteristic dolomite species and some of its applications, both in terms of its nutritional behaviour and in determining the factors that favour the rich and rare flora growing on dolomitic soils. Soil, foliar, stem and root samples of the species studied were collected from different locations in the south of Spain. The samples were analysed to determine their mineral composition. The Bioconcentration Factor (BCF) and the Translocation Factor (TF) were calculated, relating the values of the mineral contents in the soil, both total and phytoavailable, to the values from the foliar, root and stem samples. It was found that this species was able to accumulate some elements, including B, Cr, Cu, Ni, Ti, Tl and Zn, which can be phytotoxic in high concentrations, and are considered to be some of the main toxic metals in soils. In addition, it was observed that the plant can accumulate metals in the stem and leaves (TF), thus proving that it is capable of transporting them from the root to the aerial part of the plant. The data obtained may indicate that other species in the plant community may possess this bioindicator or even phytoremediation capacity. Full article
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