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Keywords = bottom-dwelling fish

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13 pages, 1559 KiB  
Article
Initial Alterations of Fish Community Structure and Diversity Following Fishing Cessation in Qilu Lake, China
by Tingbing Zhu, Feifei Hu, Jinling Gong, Kairun Liu, Zhibin Guo, Deguo Yang and Xuemei Li
Animals 2024, 14(16), 2289; https://doi.org/10.3390/ani14162289 - 6 Aug 2024
Viewed by 1226
Abstract
The Qilu Lake is an eutrophic shallow lake located in Yunnan Province, China. An ecological fishery project was initiated in the lake from 2011 to 2021 to introduce filter-feeding fish species that feed on algae, with the aim of improving water quality. In [...] Read more.
The Qilu Lake is an eutrophic shallow lake located in Yunnan Province, China. An ecological fishery project was initiated in the lake from 2011 to 2021 to introduce filter-feeding fish species that feed on algae, with the aim of improving water quality. In January 2022, when the ecological fishery project expired, all fisheries-related activities (including fish stocking and fishing activities) ceased in the lake. To comprehensively evaluate the initial alterations in fish community structure and diversity resulting from the fishing cessation in the Qilu Lake, the present study conducted field surveys within the one year before the fishing cessation (referred to as BFC) and the one year after the fishing cessation (referred to as AFC). A total of twenty-one fish species were collected, including four native species. Four species were recorded in the lake for the first time, including Pelteobagrus fulvidraco, Pelteobagrus vachelli, Paramisgurnus dabryanus, and Hyporhamphus intermedius. The number of fish species decreased from 21 to 13 following the fishing cessation. The fishes collected in both BFC and AFC are mainly omnivorous-feeding and of bottom-dwelling habits. The mean size of the fishes in the AFC sample shows a significant decrease compared to those in BFC. After the fishing cessation, the Shannon–Wiener diversity index and Margalef richness index of the fish slightly declined. The fish community structure of the Qilu Lake exhibits a high degree of similarity to adjacent lakes in central Yunnan. Our study demonstrates a significant shift in the fish community of the Qilu Lake following the fishing cessation, one which may adversely impact the stability of the lake ecosystem. To enhance fish species diversity in the Qilu Lake, it is recommended that policies be implemented to promote the ecological fishery project and improve habitat restoration for native fish species, while also regulating fish community structure. Full article
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11 pages, 3252 KiB  
Communication
Morphological Development and DNA Barcoding Identification of Pholis fangi Larvae and Juveniles in the Yellow Sea
by Shouhai Liu, Haijing Zhang, Xiao Ji, Xiaojia Peng, Yutao Qin and Weimin Yao
Fishes 2024, 9(6), 213; https://doi.org/10.3390/fishes9060213 - 3 Jun 2024
Viewed by 1244
Abstract
Pholis fangi is a small, bottom-dwelling fish species endemic to the Yellow Sea and Bohai Sea in China. While previous research has focused on its population biology and molecular structure, little is known about the early developmental stages of this species. In this [...] Read more.
Pholis fangi is a small, bottom-dwelling fish species endemic to the Yellow Sea and Bohai Sea in China. While previous research has focused on its population biology and molecular structure, little is known about the early developmental stages of this species. In this study, larval and juvenile P. fangi specimens were collected from the Sheyang Sea Area, Jiangsu Province, in 2017. Morphological features were examined using microscopy, and DNA barcoding was conducted to confirm species identification. The research documented detailed changes in yolk sac, fin development, and melanophore distribution patterns across larval and juvenile stages of P. fangi. Comparative analysis with other Pholis species revealed that melanophore distribution is a key distinguishing characteristic, allowing effective differentiation between larval and juvenile stages, as well as between Pholis species. This study provides valuable insights into the early life history of P. fangi, contributing to a better understanding of the genus Pholis. The findings demonstrate the utility of combining traditional morphological observation and molecular techniques for accurate species identification, particularly during the critical larval and juvenile developmental phases. Full article
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11 pages, 2394 KiB  
Article
Behavioral Study of 3- and 5-Halocytisine Derivatives in Zebrafish Using the Novel Tank Diving Test (NTT)
by Amaury Farías-Cea, Cristóbal Leal, Martín Hödar-Salazar, Erica Esparza, Luis Martínez-Duran, Irma Fuentes and Patricio Iturriaga-Vásquez
Int. J. Mol. Sci. 2023, 24(13), 10635; https://doi.org/10.3390/ijms241310635 - 25 Jun 2023
Cited by 10 | Viewed by 3320
Abstract
Anxiety is a serious mental disorder, and recent statistics have determined that 35.12% of the global population had an anxiety disorder during the COVID-19 pandemic. A mechanism associated with anxiolytic effects is related to nicotinic acetylcholine receptor (nAChR) agonists, principally acting on the [...] Read more.
Anxiety is a serious mental disorder, and recent statistics have determined that 35.12% of the global population had an anxiety disorder during the COVID-19 pandemic. A mechanism associated with anxiolytic effects is related to nicotinic acetylcholine receptor (nAChR) agonists, principally acting on the α4β2 nAChR subtype. nAChRs are present in different animal models, including murine and teleosteos ones. Zebrafish has become an ideal animal model due to its high human genetic similarities (70%), giving it high versatility in different areas of study, among them in behavioral studies related to anxiety. The novel tank diving test (NTT) is one of the many paradigms used for studies on new drugs related to their anxiolytic effect. In this work, an adult zebrafish was used to determine the behavioral effects of 3- and 5-halocytisine derivatives, using the NTT at different doses. Our results show that substitution at position 3 by chlorine or bromine decreases the time spent by the fish at the bottom compared to the control. However, the 3-chloro derivative at higher doses increases the bottom dwelling time. In contrast, substitution at the 5 position increases bottom dwelling at all concentrations showing no anxiolytic effects in this model. Unexpected results were observed with the 5-chlorocytisine derivative, which at a concentration of 10 mg/L produced a significant decrease in bottom dwelling and showed high times of freezing. In conclusion, the 3-chloro and 3-bromo derivatives show an anxiolytic effect, the 3-chlorocytisine derivative being more potent than the 3-bromo derivative, with the lowest time at the bottom of the tank at 1mg/L. On the other hand, chlorine, and bromine at position 5 produce an opposite effect. Full article
(This article belongs to the Special Issue Zebrafish as a Model for Biomedical Studies)
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25 pages, 20717 KiB  
Article
Quantifying Vegetation on a Rock-Ramp Fishway for Fish Run-Up and Habitat Enhancement: The Case of the Miyanaka Intake Dam in Japan
by Taku Masumoto, Masahiko Nakai, Takashi Aoki, Takashi Asaeda and Mizanur Rahman
Water 2023, 15(12), 2188; https://doi.org/10.3390/w15122188 - 10 Jun 2023
Cited by 4 | Viewed by 2106
Abstract
The Miyanaka Intake Dam fishway underwent improvements in 2012, and we established a new rock-ramp fishway called the Seseragi Fishway, cognizant of its utility as a passage and a habitat for bottom-dwelling and small fish with weak swimming ability. However, the fishway is [...] Read more.
The Miyanaka Intake Dam fishway underwent improvements in 2012, and we established a new rock-ramp fishway called the Seseragi Fishway, cognizant of its utility as a passage and a habitat for bottom-dwelling and small fish with weak swimming ability. However, the fishway is occasionally submerged by floods, causing sediment accumulation that leads to changes in the vegetation composition. In addition, the arrival and inflow of seeds from upstream and the surrounding areas result in vegetation changes. In this study, the inside and outside of the rock-ramp fishway were divided into eight areas, and the vegetation succession after 2012 was determined. A correlation was observed between the results of fish catch surveys during the same period and the vegetation. Based on these results, we reported on the process of steadily operating the rock-ramp fishway while devising and improving specific management methods. Changes in vegetation, such as an increase in upright vegetation and a decrease in flow-obstructing vegetation, contributed to an increase in the population of bottom-dwellers, weak swimmers, and juvenile fish. The existence and management of appropriate vegetation are important for maintaining fishways inhabited by a variety of fish species. Full article
(This article belongs to the Section Biodiversity and Functionality of Aquatic Ecosystems)
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15 pages, 1933 KiB  
Article
Round Goby Detection in Lakes Huron and Michigan—An Evaluation of eDNA and Fish Catches
by Kasia J. Przybyla-Kelly, Ashley M. Spoljaric and Meredith B. Nevers
Fishes 2023, 8(1), 41; https://doi.org/10.3390/fishes8010041 - 6 Jan 2023
Cited by 7 | Viewed by 3625 | Correction
Abstract
Aquatic surveys for fish in large water bodies (e.g., Laurentian Great Lakes of North America) often require a flexible approach using multiple methods, surveying different depths, and sampling across seasons, especially when the target species is elusive in its natural habitat. The round [...] Read more.
Aquatic surveys for fish in large water bodies (e.g., Laurentian Great Lakes of North America) often require a flexible approach using multiple methods, surveying different depths, and sampling across seasons, especially when the target species is elusive in its natural habitat. The round goby (Neogobius melanostomus) is an invasive, bottom-dwelling fish inhabiting rocky areas of all five Great Lakes. While trawl surveys are typically used for abundance assessments, angling has been demonstrated as a means of supplementing surveys with additional data. Yet, round goby abundance and distribution is still not well described. Recently, with considerable success, scientists have explored sampling environmental DNA (eDNA) to complement traditional monitoring techniques for population abundance estimates, early detection of invasive species, and spawning or migration events. Therefore, we collected eDNA from water samples alongside bottom trawls and hook and line angling in Lakes Huron and Michigan to detect round goby. eDNA samples were analyzed by both droplet digital PCR (ddPCR) and quantitative PCR (qPCR) to maximize the likelihood of detection. Overall, round goby was captured in 23% of the trawls, but the eDNA based methods detected round goby in 74% and 66% of samples by ddPCR and qPCR, respectively, mostly in samples collected at <30 m depths, and mostly in the fall. More studies comparing eDNA based methods to traditional monitoring, especially trawls in large open waters, may contribute to a better understanding of using eDNA in population assessments. Full article
(This article belongs to the Special Issue Application of Environmental DNA Technology in Fishery Resources)
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16 pages, 3010 KiB  
Article
Chromosome-Level Genome Assembly and Transcriptome Comparison Analysis of Cephalopholis sonnerati and Its Related Grouper Species
by Zhenzhen Xie, Dengdong Wang, Shoujia Jiang, Cheng Peng, Qing Wang, Chunren Huang, Shuisheng Li, Haoran Lin and Yong Zhang
Biology 2022, 11(7), 1053; https://doi.org/10.3390/biology11071053 - 13 Jul 2022
Cited by 8 | Viewed by 3213
Abstract
The tomato hind, Cephalopholis sonnerati, is a bottom-dwelling coral reef fish, which is widely distributed in the Indo-Pacific and Red Sea. C. sonnerati also features complex social structures and behaviour mechanisms. Here, we present a high-quality, chromosome-level genome assembly for C. sonnerati [...] Read more.
The tomato hind, Cephalopholis sonnerati, is a bottom-dwelling coral reef fish, which is widely distributed in the Indo-Pacific and Red Sea. C. sonnerati also features complex social structures and behaviour mechanisms. Here, we present a high-quality, chromosome-level genome assembly for C. sonnerati that was derived using PacBio sequencing and Hi-C technologies. A 1043.66 Mb genome with an N50 length of 2.49 Mb was assembled, produced containing 795 contigs assembled into 24 chromosomes. Overall, 97.2% of the complete BUSCOs were identified in the genome. A total of 26,130 protein-coding genes were predicted, of which 94.26% were functionally annotated. Evolutionary analysis revealed that C. sonnerati diverged from its common ancestor with E. lanceolatus and E. akaara approximately 41.7 million years ago. In addition, comparative genome analyses indicated that the expanded gene families were highly enriched in the sensory system. Finally, we found the tissue-specific expression of 8108 genes. We found that these tissue-specific genes were highly enriched in the brain. In brief, the high-quality, chromosome-level reference genome will provide a valuable genome resource for studies of the genetic conservation, resistance breeding, and evolution of C. sonnerati. Full article
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26 pages, 3034 KiB  
Article
Effectiveness of New Rock-Ramp Fishway at Miyanaka Intake Dam Compared with Existing Large and Small Stair-Type Fishways
by Taku Masumoto, Masahiko Nakai, Takashi Asaeda and Mizanur Rahman
Water 2022, 14(13), 1991; https://doi.org/10.3390/w14131991 - 21 Jun 2022
Cited by 7 | Viewed by 3233
Abstract
The migration of fish is influenced by the unique environmental characteristics of the destination and migratory habitat preferences. There are three fishways in Miyanaka Intake Dam. The rock-ramp fishway was newly established in 2012, creating an environment with different flow velocities and water [...] Read more.
The migration of fish is influenced by the unique environmental characteristics of the destination and migratory habitat preferences. There are three fishways in Miyanaka Intake Dam. The rock-ramp fishway was newly established in 2012, creating an environment with different flow velocities and water depths. The purpose of this study was to investigate the effectiveness of the new rock-ramp fishway for native fish through two surveys. In the first survey, traps were installed during the survey period in all three fishways and all fish were caught. The run-up environment was quantified by measuring the flow velocity. In the second survey, fish were caught by spectrum methods upstream and downstream from the dam. It was found that bottom-dwelling fish and swimming fish not bound to the bottom with low migration abilities used the rock-ramp fishway for migration and as a habitat. After the new rock-ramp fishway was built, catches increased upstream from the dam. Further, the rock-ramp fishway is a potential habitat for certain species, such as Cottus pollux. As this is the first study to demonstrate the effectiveness of rock-ramp fishways, the research results are expected to be valuable to fishery managers and those planning river engineering projects. Full article
(This article belongs to the Section Hydraulics and Hydrodynamics)
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16 pages, 4737 KiB  
Article
Assessing the Stock Dynamics of Elasmobranchii off the Southern Coast of Sicily by Using Trawl Survey Data
by Fabio Falsone, Vita Gancitano, Michele Luca Geraci, Giacomo Sardo, Danilo Scannella, Fabrizio Serena, Sergio Vitale and Fabio Fiorentino
Fishes 2022, 7(3), 136; https://doi.org/10.3390/fishes7030136 - 7 Jun 2022
Cited by 14 | Viewed by 4065
Abstract
Elasmobranchii (sharks and rays), which have peculiar and vulnerable life-history traits, are highly threatened by fishing activities. Indeed, between 53% and 71% of Mediterranean elasmobranch species are at risk of extinction. In this context, using the abundance MSY (AMSY) model, the present study [...] Read more.
Elasmobranchii (sharks and rays), which have peculiar and vulnerable life-history traits, are highly threatened by fishing activities. Indeed, between 53% and 71% of Mediterranean elasmobranch species are at risk of extinction. In this context, using the abundance MSY (AMSY) model, the present study provides an assessment of 20 batoids and 16 shark species in the Strait of Sicily, sampled during a bottom trawl survey from 1995 to 2020. Overall, the outputs underline a progressively improving condition for shark and ray assemblages of both shelf and eurybathic zones. As for slope-dwelling species, a horseshoe-shaped dynamic, characterized by a progressive decrease in relative harvesting pressure and an increase in relative biomass followed by an increase in fishing pressure and decrease in biomass, was detected. The dynamics of the Elasmobranchii living in the Strait of Sicily appear to be affected by changes in the fishing patterns of trawlers, showing a shift from shallow water to bathyal fishing grounds and targeting deep-water red shrimp. In this context, it seems wise to limit the impact of deep-water fisheries on Elasmobranchii by reducing fishing efforts and implementing ad hoc management measures aimed at safeguarding these vulnerable species. Full article
(This article belongs to the Special Issue Cartilaginous Fishes: Stock Assessment and Population Dynamics)
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18 pages, 2382 KiB  
Article
Diversity of Shallow-Water Species in Prawn Trawling: A Case Study of Malindi–Ungwana Bay, Kenya
by Esther N. Fondo, Johnstone O. Omukoto, Nina Wambiji, Gladys M. Okemwa, Pascal Thoya, George W. Maina and Edward N. Kimani
Diversity 2022, 14(3), 199; https://doi.org/10.3390/d14030199 - 9 Mar 2022
Cited by 2 | Viewed by 3652
Abstract
Bottom trawling is a common fishing method that targets bottom-dwelling fisheries resources. It is non-selective and large amounts of by-catch are discarded, raising serious sustainability and ecosystem conservation concerns. In this study, a shallow-water bottom-trawl fishery was evaluated using logbook catch data between [...] Read more.
Bottom trawling is a common fishing method that targets bottom-dwelling fisheries resources. It is non-selective and large amounts of by-catch are discarded, raising serious sustainability and ecosystem conservation concerns. In this study, a shallow-water bottom-trawl fishery was evaluated using logbook catch data between 2011 and 2019 and the species composition data collected by fisheries observers between 2016 and 2019. The logbook data showed a twenty-fold increase in the annual catches with a ten-fold increase in fishing effort and an increase in the proportion of retained catch from 2011 to 2019. The observer data showed that for prawn, the by-catch ratio ranged from 1:3 to 1:9 during the four years. Multivariate analysis revealed significant differences between the compositions of retained and discarded catches mainly attributed to Pellona ditchela, Nematopalaemontenuipes, and Secutor insidiator. There was no significant decline in species diversity and the trophic level of the catches over the 4-year observer period indicating no marked impact of trawling on the stock at the current level of fishing effort. This study provides baseline information on the prawn trawl fishery against which the performance of the management regulations may be evaluated towards the Ecosystem Approach to Fisheries management. Full article
(This article belongs to the Special Issue Marine Nearshore Biodiversity)
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23 pages, 3753 KiB  
Review
Jellyfish and Ctenophores in Limfjorden (Denmark)—Mini-Review, with Recent New Observations
by Hans Ulrik Riisgård and Josephine Goldstein
J. Mar. Sci. Eng. 2014, 2(4), 593-615; https://doi.org/10.3390/jmse2040593 - 14 Oct 2014
Cited by 14 | Viewed by 7717
Abstract
Limfjorden is a major Danish water system that connects the North Sea via Thyborøn Kanal in the west and to the Kattegat in the east. Limfjorden is heavily eutrophicated and certain areas suffer from oxygen depletion each summer. Bottom-dwelling fish have disappeared as [...] Read more.
Limfjorden is a major Danish water system that connects the North Sea via Thyborøn Kanal in the west and to the Kattegat in the east. Limfjorden is heavily eutrophicated and certain areas suffer from oxygen depletion each summer. Bottom-dwelling fish have disappeared as the number of jellyfish and ctenophores has increased. The abundance and predation impact of jellyfish and ctenophores in Limfjorden have been described in a number of studies conducted during the last decade, and a mini-review of this literature is given here in Section 2. The common jellyfish Aurelia aurita may, in a few years, be very abundant and exert a considerable predatory impact on zooplankton and fish larvae. Abundance, species composition, and population dynamics of A. aurita may, at irregular time intervals, be strongly influenced not only by the water brought into Limfjorden from the North Sea, but also by competition with the invasive ctenophore Mnemiopsis leidyi that occurred for the first time in extremely high numbers in 2007, brought into the fjord system with North Sea water. It has been suggested that Limfjorden may function as an incubator for M. leidyi with the potential to further seed M. leidyi into the Kattegat and adjacent Danish waters, and recent observations seem to support this hypothesis. In Section 3, we report on two bloom events of ctenophores, Pleurobrachia pileus and M. leidyi, along with their predators (Beroe spp.) in Limfjorden in the autumns of 2012 and 2013, when the usually dominating A. aurita was absent. However, the present observation of B. ovata being M. leidyi’s native predator and a new species in Limfjorden may in the future reduce the abundance of M. leidyi. Full article
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