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Search Results (238)

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Keywords = biochemical characterisation

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29 pages, 1090 KB  
Review
Advanced Waste-to-Energy Technologies: Evidence, Scalability, and Implications for a Net-Zero Transition
by Sharif H. Zein
Appl. Sci. 2026, 16(9), 4169; https://doi.org/10.3390/app16094169 - 24 Apr 2026
Abstract
The escalating global challenge of waste management, combined with the urgent need to reduce greenhouse gas emissions, has intensified interest in waste-to-energy (WtE) technologies as integrated solutions for sustainable energy recovery. This review critically examines advanced WtE technologies through three interconnected dimensions: the [...] Read more.
The escalating global challenge of waste management, combined with the urgent need to reduce greenhouse gas emissions, has intensified interest in waste-to-energy (WtE) technologies as integrated solutions for sustainable energy recovery. This review critically examines advanced WtE technologies through three interconnected dimensions: the strength of the evidence base supporting performance and environmental claims, the challenges associated with scalability and system integration, and the implications of these technologies for net-zero energy transitions. The analysis covers thermochemical, biochemical, and hybrid conversion pathways, including pyrolysis, gasification, hydrothermal liquefaction, and anaerobic digestion, with particular emphasis on identifying inconsistencies in the literature and clarifying key uncertainties. A persistent gap between laboratory-scale performance and commercial-scale operation is identified and characterised across conversion pathways. Its principal drivers of feedstock heterogeneity, heat transfer limitations, and operational complexity are examined. Environmental assessments are shown to be highly sensitive to system boundary definitions and carbon accounting methodologies, with lifecycle results varying substantially depending on energy substitution assumptions and biogenic carbon treatment. The integration of WtE within circular economy frameworks demonstrates that energy recovery is most effective when positioned as a complement to material recycling rather than a substitute. The roles of combined heat and power configurations, district heating, carbon capture and storage, and emerging reactor technologies in advancing net-zero contributions are assessed. Significant data gaps are identified in long-term operational performance, modelling transparency, and reporting standardisation. The review concludes that WtE technologies represent valuable components of integrated waste and energy management systems, but their long-term contribution to decarbonisation requires careful system design, sound operational strategies, and harmonised performance evaluation frameworks. Full article
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41 pages, 4279 KB  
Review
Dietary Nitrate-Rich Vegetables as Natural Modulators of Health: Mechanisms and Benefits in Ageing Populations
by Natalia Kurhaluk, Renata Kołodziejska, Lyudmyla Buyun, Piotr Kamiński and Halina Tkaczenko
Int. J. Mol. Sci. 2026, 27(8), 3461; https://doi.org/10.3390/ijms27083461 - 12 Apr 2026
Viewed by 736
Abstract
Nitrate-rich vegetables are increasingly recognised as a key subgroup of phytochemical-dense foods that have significant potential for preventing and managing chronic diseases. Although dietary nitrates were historically approached with caution due to concerns about nitrosamine formation, contemporary evidence highlights their beneficial effects on [...] Read more.
Nitrate-rich vegetables are increasingly recognised as a key subgroup of phytochemical-dense foods that have significant potential for preventing and managing chronic diseases. Although dietary nitrates were historically approached with caution due to concerns about nitrosamine formation, contemporary evidence highlights their beneficial effects on vascular, metabolic and cognitive functions. Ageing is characterised by endothelial dysfunction, impaired nitric oxide (NO) synthesis and increased oxidative stress, which elevates cardiovascular risk. In this context, nitrate-rich vegetables offer a natural way to restore NO bioavailability and support cardiometabolic health. This narrative review provides an integrative overview of nitrate-rich vegetables as sources of bioactive phytochemicals with therapeutic relevance. We summarise the biochemical pathways of nitrate and nitrite metabolism, including the enterosalivary nitrate–nitrite–NO cycle, the role of oral microbiota, and red blood cell-mediated nitrite reduction. Particular emphasis is placed on NOS-independent NO production, which becomes increasingly important with age, and on the synergistic interactions between dietary nitrates and other phytochemicals such as polyphenols, vitamin C, flavonoids and betalains. These compounds enhance NO stability, reduce oxidative stress, modulate inflammatory signalling and support mitochondrial function, thereby amplifying the health benefits of nitrate-rich vegetables. Beetroot, with its high nitrate content and distinctive antioxidant profile, is highlighted as a prime example. Clinical and mechanistic studies suggest that nitrate-rich vegetables may lower blood pressure, improve endothelial function and cerebral perfusion, enhance cognitive performance and muscle oxygenation, and increase exercise efficiency, particularly in older adults. Additional benefits include anti-inflammatory effects, modulation of platelet function and improvements in metabolic parameters, all of which are relevant to the prevention of chronic diseases such as hypertension, type 2 diabetes and atherosclerosis. While dietary nitrate is generally considered low-risk for healthy adults, caution is warranted in susceptible populations, such as infants and individuals with impaired renal function. Finally, significant research gaps remain, including the need for long-term, well-controlled trials and personalised strategies that account for variability in microbiota composition and nitrate metabolism between individuals. Full article
(This article belongs to the Special Issue Phytochemicals and Antioxidants in Health and Disease Modulation)
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29 pages, 4820 KB  
Review
From Phytotoxin to Cell-Death Probe: Ophiobolin A and Related Sesterterpenoids in Membrane Stress and Non-Apoptotic Cell Death
by David Aebisher, Izabella Wilk and Dorota Bartusik-Aebisher
Molecules 2026, 31(7), 1206; https://doi.org/10.3390/molecules31071206 - 5 Apr 2026
Viewed by 622
Abstract
Ophiobolin A is a fungal sesterterpenoid initially characterised as a phytotoxin but progressively investigated for its biomedical significance due to its potent and mechanistically characteristic cellular activities. In this review, Ophiobolin A is discussed within the wider landscape of natural products as a [...] Read more.
Ophiobolin A is a fungal sesterterpenoid initially characterised as a phytotoxin but progressively investigated for its biomedical significance due to its potent and mechanistically characteristic cellular activities. In this review, Ophiobolin A is discussed within the wider landscape of natural products as a source of bioactive molecular scaffolds, and current knowledge on its structural features, biosynthesis, chemical synthesis, semi-synthetic modification, and in vitro biological applications is summarised. Evidence drawn from chemical, biochemical, and cell biology studies is integrated to describe the distinctive 5-8-5 tricyclic scaffold, the electrophilic dicarbonyl motif, and their roles in covalent modification of cellular components. Collectively, the reviewed evidence underscores that Ophiobolin A and its derivatives trigger both apoptotic and non-apoptotic cell death pathways. These include paraptosis-like death, which is a regulated form of cell death not associated with apoptosis that is defined by major cytoplasmic vacoulisation. This commonly occurs in apoptosis-resistant cancer models via disruption of membrane lipid homeostasis, calmodulin-dependent signalling, mitochondrial function, and proteostasis. Structure–activity relationship studies show that modulation of electrophilicity, oxidation state, and peripheral functionality enables tuning of potency, selectivity, and traceability while retaining key phenotypes. In addition to anticancer effects, antimicrobial and anti-inflammatory activities are also briefly summarised. Taken together, the literature supports Ophiobolin A as a useful molecular probe for considering cell death mechanisms and as a chemically complex yet suitable starting point for derivative development, while reinforcing the need for improved selectivity, delivery strategies, and in vivo validation to further translational potential. Full article
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28 pages, 1130 KB  
Article
Biochemical Composition and Antioxidant Capacity of Mediterranean Marine Macroalgae: Fatty Acids, Carotenoids, and Phenolics
by José António Mestre Prates, Mohamed Ezzaitouni, Tarik Chileh-Chelh, Rosalía López-Ruiz and José Luis Guil-Guerrero
Phycology 2026, 6(2), 37; https://doi.org/10.3390/phycology6020037 - 2 Apr 2026
Viewed by 277
Abstract
Macroalgae are increasingly recognised as promising sources of bioactive compounds with nutritional and functional relevance. This study investigated the biochemical composition of selected green, brown, and red marine macroalgae from the Mediterranean coast sampled at different seasons, focusing on fatty acid profiles, carotenoid [...] Read more.
Macroalgae are increasingly recognised as promising sources of bioactive compounds with nutritional and functional relevance. This study investigated the biochemical composition of selected green, brown, and red marine macroalgae from the Mediterranean coast sampled at different seasons, focusing on fatty acid profiles, carotenoid composition, phenolic and flavonoid contents, antioxidant activity, and multivariate biochemical structuring. Fatty acid distributions were determined by Gas Chromatography (GC)-Flame Ionisation detector (FID), carotenoids were quantified and profiled by Liquid Chromatography–Mass Spectrometry (LC-MS), and total phenolic content, total flavonoid content, and antioxidant capacity (ABTS•+ and DPPH methods) were assessed using standard spectrophotometric assays. Principal component analysis was applied to evaluate relationships among biochemical variables and taxonomic patterns. Brown macroalgae tended to exhibit more complex and enriched biochemical profiles, containing high proportions of long-chain n-3 polyunsaturated fatty acids, particularly eicosapentaenoic acid, elevated total carotenoid contents dominated by fucoxanthin, the highest total phenolic and flavonoid contents, and antioxidant activities. Green macroalgae were characterised by fatty acid profiles rich in saturated and C18 polyunsaturated fatty acids, while carotenoid compositions were dominated by lutein and siphonoxanthin. Red macroalgae exhibited comparatively simpler lipid and pigment patterns, characterised by palmitic acid and zeaxanthin as dominant components and lower total carotenoid levels. Principal component analysis revealed taxonomic structuring, with brown algae clearly separated from green and red groups, while seasonal differences were minor. Antioxidant activity closely clustered with carotenoids and total phenolic content, suggesting their combined contribution to radical-scavenging capacity. Overall, brown species appear as promising candidates for functional foods and nutraceutical applications. Full article
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26 pages, 6152 KB  
Article
Optimising Biogas Production from Parthenium hysterophorus Biomass Through Thermal Pretreatment and Batch Anaerobic Digestion
by Biswanath Saha, Visva Bharati Barua, Meena Khwairakpam, Ajay Kalamdhad, Pallavi Sharma, Habib Ullah and Malinee Sriariyanun
Fermentation 2026, 12(3), 135; https://doi.org/10.3390/fermentation12030135 - 4 Mar 2026
Viewed by 667
Abstract
This study evaluated the influence of four thermal pretreatment techniques—autoclaving, hot-air oven treatment, hot-water immersion, and microwave irradiation—on Parthenium hysterophorus biomass to improve its biodegradability and biogas generation potential under batch anaerobic digestion. Among the investigated methods, hot-air oven pretreatment at 110 °C [...] Read more.
This study evaluated the influence of four thermal pretreatment techniques—autoclaving, hot-air oven treatment, hot-water immersion, and microwave irradiation—on Parthenium hysterophorus biomass to improve its biodegradability and biogas generation potential under batch anaerobic digestion. Among the investigated methods, hot-air oven pretreatment at 110 °C for 90 min exhibited the most significant enhancement in biomass solubilization, as indicated by a 51.5% rise in soluble chemical oxygen demand (sCOD) and an increase in volatile fatty acids (VFAs) compared with the untreated control. These compositional improvements facilitated faster hydrolysis and led to a 25.73% higher cumulative methane yield in biochemical methane potential (BMP) assays. Structural analysis revealed pronounced alterations in the lignocellulosic matrix, with reductions in hemicellulose and partial delignification improving substrate accessibility. Complementary characterisation using field emission scanning electron microscopy (FESEM), X-ray diffraction (XRD), and Fourier transform infrared spectroscopy (FTIR) confirmed the disruption of crystalline cellulose regions and modification of functional groups, supporting the observed biochemical improvements. Collectively, the results demonstrate that hot-air oven pretreatment is a practical and energy-efficient approach for enhancing the digestibility of P. hysterophorus biomass, promoting its utilisation as a sustainable feedstock for renewable biogas production and environmental management of this invasive weed. Full article
(This article belongs to the Special Issue Anaerobic Digestion to High-Value Organic Fertilizer and Biogas)
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18 pages, 1039 KB  
Article
Physicochemical Characterisation of Microalgal Biomass: Paving the Way for Industrial Exploitation
by César Marina-Montes, Silvia Villaró-Cos, Lucie K. Tintrop, Daniel Kurpan, Francisco Javier Alarcón, Marco García-Vaquero and Tomás Lafarga
Foods 2026, 15(5), 809; https://doi.org/10.3390/foods15050809 - 26 Feb 2026
Cited by 1 | Viewed by 516
Abstract
Arthrospira platensis and Chlorella vulgaris are popular commercialised microalgae due to their benefits and relatively easy large-scale cultivation. However, recent advances in biotechnology have revealed a new range of promising strains with industrial potential but limited current markets. To bridge the gap in [...] Read more.
Arthrospira platensis and Chlorella vulgaris are popular commercialised microalgae due to their benefits and relatively easy large-scale cultivation. However, recent advances in biotechnology have revealed a new range of promising strains with industrial potential but limited current markets. To bridge the gap in the existing literature, this study provides a comprehensive and simultaneous biochemical characterisation within a unified analytical framework of six additional strains: Phaeodactylum tricornutum, Tetraselmis chuii, Nannochloropsis oceanica, Scenedesmus almeriensis, Tisochrysis lutea, and Skeletonema costatum. The analyses included macromolecular composition, amino acid and fatty acid profiles, and volatile organic compound composition. Key results identified P. tricornutum and T. chuii as high-quality protein alternatives, reaching protein concentrations of 31% and 41% (dw), respectively, with essential amino acid profiles (arginine and tryptophan) that match commercial standards. Additionally, specific carbohydrate and lipid strengths were identified: P. tricornutum showed a high carbohydrate content (37%), while N. oceanica exhibited elevated levels of palmitic, palmitoleic, eicosapentaenoic, and arachidonic acids, marking them as versatile candidates for nutritional applications. Finally, volatile organic compound analyses revealed distinct aroma profiles, highlighting the potential of less-exploited microalgal strains for the food and feed sectors. Full article
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16 pages, 1522 KB  
Article
Relationship Between Physical Activity Frequency and Cardiovascular Risk Throughout the Life Cycle
by Oscar Araque, Luz Adriana Sánchez-Echeverri and Ivonne X. Cerón
J. Funct. Morphol. Kinesiol. 2026, 11(1), 91; https://doi.org/10.3390/jfmk11010091 - 25 Feb 2026
Viewed by 593
Abstract
Objectives: Cardiovascular diseases (CVD) remain a leading cause of premature mortality globally, despite the proven efficacy of physical activity in reducing risks. This research aims to identify risk characteristics and characterise pathologies related to the onset of CVD in relation to physical [...] Read more.
Objectives: Cardiovascular diseases (CVD) remain a leading cause of premature mortality globally, despite the proven efficacy of physical activity in reducing risks. This research aims to identify risk characteristics and characterise pathologies related to the onset of CVD in relation to physical activity levels. The study tests the hypothesis that adequate physical activity is associated with CVD-related events, while sedentary behaviour is a factor related to increased risk factors. Methods: A cross-sectional, observational, descriptive, and analytical study was conducted with 116 participants of both sexes (aged 16 to 77 years) in El Espinal, Tolima. Clinical, anthropometric, and biochemical assessments were performed, including blood pressure, Body Mass Index (BMI), visceral fat, and lipid profiles. Physical activity was self-reported and categorised as weekly, monthly, and occasional exercise. Descriptive and bivariate statistical analyses were performed. Quantitative variables were expressed as means and standard deviations. Qualitative variables were presented as absolute frequencies. Statistical interaction graphs were used to analyse the effects of age and exercise frequency on pulse pressure. Results: Weekly exercise was identified as a key modulator of hemodynamic stability; while BMI and visceral fat increased with age, pulse pressure remained stable (44.17–46.55 mmHg). In contrast, occasional exercise was linked to high cardiovascular vulnerability, with pulse pressure spiking to a critical 75.00 mmHg in elderly participants (77 years) and BMI reaching obesity levels (38.15 kg/m2). Monthly exercise showed high variability and progressive lipid profile deterioration, with total cholesterol reaching 282.00 mg/dL in late maturity. Conclusions: Regular weekly physical activity acts as a physiological buffer that dissociates chronological ageing from vascular damage. While weekly exercise maintains optimal hemodynamic and metabolic ranges, occasional or inconsistent activity fails to prevent critical increases in pulse pressure and arterial stiffness during senescence. These findings underscore the necessity of regular, rather than sporadic, exercise as a vital “medicine” for maintaining arterial integrity across the lifespan. Full article
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35 pages, 941 KB  
Article
Bioenergy from Maize Silage by Anaerobic Digestion: Batch Kinetics in Relation to Biochemical Composition
by Krzysztof Pilarski, Agnieszka A. Pilarska, Michał B. Pietrzak and Bartłomiej Igliński
Energies 2026, 19(4), 1105; https://doi.org/10.3390/en19041105 - 22 Feb 2026
Cited by 1 | Viewed by 658
Abstract
Maize silage can play a key role in policies aimed at stabilising local energy systems, as it constitutes a critical renewable feedstock for European biogas plants. By providing a dense and predictable source of chemical energy, it supports balance and reliability in the [...] Read more.
Maize silage can play a key role in policies aimed at stabilising local energy systems, as it constitutes a critical renewable feedstock for European biogas plants. By providing a dense and predictable source of chemical energy, it supports balance and reliability in the agricultural energy sector. To convert this potential into stable energy production, operators require kinetic models that translate routine silage quality indicators into concrete guidance for digester operation and control. Therefore, the aim of this article was to evaluate the batch kinetics of anaerobic digestion (AD) of maize silage and to select an adequate model for describing biochemical methane potential (BMP) profiles and associated energy recovery in the context of start-up, organic loading rate (OLR), hydraulic retention time (HRT) and feedstock preparation. Ten batches of silage (A–J) were examined, covering a realistic range of pH, electrical conductivity (EC), dry and volatile solids, ash, protein–fat–fibre fractions, fibre composition (NDF, ADF and ADL), derived fractions (hemicellulose, cellulose, and residual organic matter (OM)), C/N ratio and macro-/micronutrient profiles, including trace elements relevant to methanogenesis (Ni, Co, Mo, and Se). BMP tests were carried out in batch mode, and the resulting curves were fitted using the modified Gompertz and a first-order kinetic model. Methane yields of approx. 100–120 m3 CH4/Mg fresh matter (FM) and 336–402 m3 CH4/Mg volatile solids (VS), with CH4 contents of 52–57% v/v, were typical for energy-grade maize silage. Kinetic and energetic behaviours were governed mainly by residual OM and hemicellulose (shortening the lag phase and increasing the maximum methane production rate), the ADL/cellulose ratio (controlling the slower hydrolytic tail), EC and Na/Cl/S (extending the lag phase), and C/N together with Ni/Co/Mo/Se (stabilising methanogenesis). The modified Gompertz model reproduced BMP curves with a pronounced lag phase and asymmetry more accurately (lower error and better information criterion values), and its parameters directly support start-up design, OLR ramp-up and energetic performance optimisation in bioenergy reactors. The novelty of this work lies in combining batch BMP tests, comparative kinetic modelling and detailed silage characterisation to establish quantitative links between kinetic parameters and routine maize silage quality indicators that are directly relevant for biogas plant operation and renewable energy production. Full article
(This article belongs to the Section A4: Bio-Energy)
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15 pages, 786 KB  
Article
Urinary Normetanephrine for the Diagnosis of Canine Pheochromocytoma via Liquid Chromatography–Mass Spectrometry
by Matteo Petini, Andrea Zoia, Tommaso Furlanello, Luca Magna, Riccardo Masti, Jose Sanchez del Pulgar and Francesca Maria Bertolini
Vet. Sci. 2026, 13(2), 159; https://doi.org/10.3390/vetsci13020159 - 6 Feb 2026
Viewed by 1221
Abstract
Pheochromocytomas (PHEO) are rare adrenal medullary tumours characterised by catecholamine secretion. Accurate diagnosis relies on the sensitive measurement of metanephrine (MN) and normetanephrine (NMN); however, the application of liquid chromatography–mass spectrometry (LC–MS/MS) in veterinary medicine remains limited. This study aimed to develop and [...] Read more.
Pheochromocytomas (PHEO) are rare adrenal medullary tumours characterised by catecholamine secretion. Accurate diagnosis relies on the sensitive measurement of metanephrine (MN) and normetanephrine (NMN); however, the application of liquid chromatography–mass spectrometry (LC–MS/MS) in veterinary medicine remains limited. This study aimed to develop and analytically validate an LC–MS/MS method for the simultaneous quantification of urinary MN and NMN in dogs, establish reference intervals (RIs) for MN- and NMN-to-creatinine ratios (uMN:CR and uNMN:CR), and preliminarily assess the diagnostic utility of uNMN:CR for PHEO detection. The RIs were 2.2–78.9 nmol/mmol for uMN:CR and 4.4–77.4 nmol/mmol for uNMN:CR. Dogs with PHEO showed significantly higher uNMN:CR values compared with dogs with other adrenal masses, non-adrenal disease, or healthy controls. Using the upper RI limit as a threshold, sensitivity and specificity were 91.7% and 35.7%, respectively. Receiver operating characteristic analysis identified an optimal uNMN:CR cut-off of 203.7 nmol/mmol, yielding 78.6% sensitivity, 83.3% specificity, and an overall diagnostic accuracy of 85% (95% CI: 0.68–1.00). These findings support LC–MS/MS as a reliable approach for urinary metanephrine analysis and uNMN:CR as a valuable biochemical tool for PHEO identification in dogs. Full article
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11 pages, 1116 KB  
Article
Epigenetic Liquid Biopsy Marks Atrial Fibrillation: Evidence from the AF Big Picture Study
by Riccardo Proietti, Nicola Tidbury, Joshua Preston, Maanya Vittal, Philippa McCabe, Garry McDowell, Gregory Y. H. Lip and Manlio Vinciguerra
Epigenomes 2026, 10(1), 9; https://doi.org/10.3390/epigenomes10010009 - 5 Feb 2026
Viewed by 881
Abstract
Background/Objectives: Atrial fibrillation (AF) is currently the most common arrhythmia worldwide, and it is linked to increased mortality and morbidity, hence the need for a better clinical stratification of AF patients. Histone complexes or nucleosomes, released into the blood circulation, are found [...] Read more.
Background/Objectives: Atrial fibrillation (AF) is currently the most common arrhythmia worldwide, and it is linked to increased mortality and morbidity, hence the need for a better clinical stratification of AF patients. Histone complexes or nucleosomes, released into the blood circulation, are found elevated in acute conditions such as stroke, trauma, and sepsis. The aim of this pilot single-centre study was to assess whether circulating histone levels could be used for diagnostic purposes in patients with AF. Methods: A total of 40 patients, well characterised for their biochemical and clinical characteristics, were recruited from outpatient clinics. Patients were randomly recruited into two groups (n = 20 per group), i.e., persistent AF and hypertensive controls. A multi-channel flow imaging methodology based on ImageStreamX was used with a well-optimised protocol to image and quantify five individual histones (H2A, H2B, H3, H4, and macroH2A1.1) together with the dimers (H2A/H2B, and H3/H4). Results: In the AF groups, plasma levels of histone dimers H2A/H2B and H3/H4 were elevated compared to hypertensive controls, 1.8% vs. 1.06% (p-value = 0.03). H2A/H2B dimer levels were increased in AF patients irrespective of gender, smoking status, diabetes, and pharmacological therapy. In the overall population, an inverse correlation between H2A and BMI was detected. Conclusions: Our pilot study, although limited in sample size, suggests that circulating histone complexes may be epigenetic sentinels for AF, offering mechanistic insights while addressing unmet needs in risk stratification. Full article
(This article belongs to the Special Issue Epigenetic Signatures in Metabolic Health and Cancer)
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34 pages, 872 KB  
Review
Bridging the Gap: A Scoping Review of Pre-Analytical Variability in Biofluid Metabolomics
by Yumna Ladha, Sushmita Sanaka, Adam Burke, Royston Goodacre, Karina T. Wright, Jade Perry and Charlotte H. Hulme
Appl. Biosci. 2026, 5(1), 10; https://doi.org/10.3390/applbiosci5010010 - 4 Feb 2026
Cited by 1 | Viewed by 595
Abstract
Metabolic profiling enables comprehensive characterisation of the small molecules that are part of the biochemical composition of biological fluids. The most widely profiled biofluids include serum and plasma. Additionally synovial fluid provides a direct reflection of the metabolomic environment of joints and holds [...] Read more.
Metabolic profiling enables comprehensive characterisation of the small molecules that are part of the biochemical composition of biological fluids. The most widely profiled biofluids include serum and plasma. Additionally synovial fluid provides a direct reflection of the metabolomic environment of joints and holds promise for biomarker discovery in arthropathies. However, the reproducibility of metabolomics data is highly sensitive to pre-analytical variation, and at the present time, standardised protocols for synovial fluid remain underdeveloped. This review aims to identify and evaluate the existing literature on effects of biofluid pre-analytical handling treatments on metabolic profiles. This review was conducted and reported according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) guidelines. A search was carried out to identify studies employing LC-MS, GC-MS, and NMR spectroscopy for the investigation of factors including sample collection variables, pre-centrifugation conditions, centrifugation parameters, post-centrifugations conditions, sample storage conditions, and freeze/thaw cycling. Best practice recommendations emerging from this review include the use of additive free serum and heparin plasma tubes, the centrifugation of samples within two hours of collection, immediate storage of samples at −80 °C, and avoidance of repeated freeze/thaw cycling. However, while pre-analytical influences have been extensively characterised for plasma and serum, evidence for synovial fluid remains limited. Overall, the findings highlight the existing recommendations for plasma and serum and demonstrate the need for standardised pre-analytical protocols and validation of quality control markers to advance synovial fluid metabolomics. Full article
(This article belongs to the Special Issue Feature Reviews for Applied Biosciences)
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23 pages, 3554 KB  
Article
Probiotic Lactic Acid Bacteria Fermentation Modulates the Bioactive Properties of Sprouted and Unsprouted Amaranth Seed
by Mihaela Aida Vasile, Nicoleta Balan, Leontina Grigore-Gurgu, Gabriela Elena Bahrim and Mihaela Cotârleț
Microorganisms 2026, 14(2), 340; https://doi.org/10.3390/microorganisms14020340 - 2 Feb 2026
Viewed by 747
Abstract
This study aims to investigate the functional and biochemical characteristics of sprouted and unsprouted red and black amaranth flours by fermentation with four probiotic strains (Lactiplantibacillus plantarum MIUG BL21, Lactiplantibacillus pentosus MIUG BL24, Lacticaseibacillus rhamnosus MIUG BL38, and Lactiplantibacillus paraplantarum MIUG BL74). [...] Read more.
This study aims to investigate the functional and biochemical characteristics of sprouted and unsprouted red and black amaranth flours by fermentation with four probiotic strains (Lactiplantibacillus plantarum MIUG BL21, Lactiplantibacillus pentosus MIUG BL24, Lacticaseibacillus rhamnosus MIUG BL38, and Lactiplantibacillus paraplantarum MIUG BL74). Aqueous extracts from freeze-dried fermented products derived from sprouted and raw seed of two Amaranthus species (Amaranthus cruentus—red amaranth and Amaranthus hypochondriacus—black amaranth) were characterised for their acidification and phytochemical profiles by titrimetric, spectrophotometric and chromatographic methods, and their antioxidant activities by ABTS and DPPH assays. Water-soluble proteins were evaluated by SDS-PAGE analysis. Nine phenolic acids (gallic acid, protocathechic acid, syringic acid, ellagic acid, ferulic acid, cinnamic acid, caffeic acid, p-coumaric acid, and chlorogenic acid) and twelve flavonoids (epicatechin gallate, hesperitin, quercetin, apigenin, luteolin, naringenin, quercetin 3-glucoside, isorhamnetin, peonidin 3-O rutinoside, epicatechin, keracyanin, and rutin trihydrate) were identified in the extracts of amaranth samples. The titratable acidity ranged from 0.59 to 5.50 mL of 0.1 N NaOH. Total flavonoid content (TFC) varied from 1.09 to 4.67 mg CE/g DW; whereas, total phenolic content (TPC) fluctuated from 1.99 to 5.76 mg GAE/g DW. The spectrum of ABTS and DPPH values was from 17.49 to 56.82% and 0.60 to 35.50%, respectively. More biologically active compounds were found in red amaranth-based samples, both sprouted and unsprouted, compared to black amaranth-based samples. There was a moderate correlation between the TPC and the antioxidant activity. The fermentation of red amaranth with L. rhamnosus MIUG BL38 led to a global increase in the protein background intensity, consistent with protein hydrolysis. Overall, sprouting and probiotics fermentation improved the fermentative performance of the amaranth seeds, enabling their effective use as a nutritive food with potential health-promoting properties. Full article
(This article belongs to the Special Issue Microbial Safety and Beneficial Microorganisms in Foods)
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16 pages, 1288 KB  
Article
Genome Mining of Acinetobacter nosocomialis J2 Using Artificial Intelligence Reveals a Highly Efficient Acid Phosphatase for Phosphate Solubilisation
by Kaixu Chen, Huiling Huang, Xiao Yu, Jing Zhang, Chunming Zhou, Zhong Yao, Zheng Xu, Yang Liu and Yang Sun
Fermentation 2026, 12(1), 64; https://doi.org/10.3390/fermentation12010064 - 21 Jan 2026
Viewed by 733
Abstract
Excessive application of chemical fertilisers has led to soil phosphorus immobilisation and aquatic eutrophication, making the development of highly efficient acid/neutral phosphatases crucial for sustainable phosphorus utilisation. In this study, we systematically investigated strain J2, which was isolated from phosphate-contaminated soil in Laoshan, [...] Read more.
Excessive application of chemical fertilisers has led to soil phosphorus immobilisation and aquatic eutrophication, making the development of highly efficient acid/neutral phosphatases crucial for sustainable phosphorus utilisation. In this study, we systematically investigated strain J2, which was isolated from phosphate-contaminated soil in Laoshan, Nanjing, China. 16S rRNA gene sequence analysis identified this strain as Acinetobacter nosocomialis J2, with 99.78% sequence similarity. Whole-genome sequencing generated a 3.83 Mb genome with a GC content of 38.59%, revealing multiple phospho-metabolism-related enzyme genes, including phospholipase C and α/β-hydrolases. A large language model–based protein representation learning strategy was employed to mine acid/neutral phosphatase genes from the genome, in which the model learned contextual and functional features from known phosphatase sequences and was used to identify semantically similar genes within the J2 genome. This approach predicted nine phosphatase candidate sequences, including AnACPase, a putative acid/neutral phosphatase. Biochemical characterisation showed that AnACPase exhibits optimal activity at pH 6.0 and 50 °C, with a Km value of 0.2454 mmol/L for the p-NPP substrate, indicating high substrate affinity. Mn2+ and Ni2+ significantly enhanced enzyme activity, whereas Cu2+ and Zn2+ strongly inhibited it. Soil remediation experiments further validated the application potential of AnACPase, which solubilised 171.56 mg/kg of phosphate within seven days. Overall, this study highlights the advantages of deep learning-assisted genome mining for functional enzyme discovery and provides a novel technological pathway for the bioremediation of phosphorus-polluted soils. Full article
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15 pages, 875 KB  
Review
From Proteome to miRNome: A Review of Multi-Omics Ocular Allergy Research Using Human Tears
by Esrin Aydin, Serap Azizoglu, Luke Chong, Moneisha Gokhale and Cenk Suphioglu
Int. J. Mol. Sci. 2026, 27(2), 671; https://doi.org/10.3390/ijms27020671 - 9 Jan 2026
Viewed by 617
Abstract
Ocular allergy (OA) is a subtype of seasonal allergy that causes symptoms of itchiness, redness, swelling and irritation of the ocular surface and eyelids, often triggering allergy-induced eye rubbing and sustained inflammation for up to six months of the year during peak allergy [...] Read more.
Ocular allergy (OA) is a subtype of seasonal allergy that causes symptoms of itchiness, redness, swelling and irritation of the ocular surface and eyelids, often triggering allergy-induced eye rubbing and sustained inflammation for up to six months of the year during peak allergy season. These symptoms, coupled with reduced sleep quality, impaired daily productivity and decreased mood, highlight a significant yet underrepresented disease burden. Recent advances in tear-based multi-omics have enabled detailed characterisation of OA-associated biochemical changes on the ocular surface, highlighting human tears as a promising biospecimen for diagnostic biomarker and therapeutic target research. This review discusses emerging proteomic, lipidomic, metabolomic and miRNA findings comparing OA sufferers with healthy controls, and, where relevant, with comorbid conditions such as dry eye disease and keratoconus. Differential expression patterns across these analytes implicate key pathways involved in immune response, wound healing, angiogenesis, inflammation, oxidative stress and return to homeostasis on the ocular surface. By integrating these data into a stepwise model of OA biopathway activation, this review outlines candidate biomarkers and highlights methodological advances that may support translation of tear multi-omics into clinical tools for OA management. Full article
(This article belongs to the Special Issue Understanding Allergy and Asthma at the Molecular Level)
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Article
Synthesis, Characterisation, and Biological Assessment of Chromium Oxide Nanoparticles Coated with Chia Seed Mucilage Extract
by Sara Lukač, Nina Tomić, Zoran Stojanović, Vladimir Rajić, Nenad Filipović, Maja Jović and Magdalena Stevanović
Pharmaceutics 2026, 18(1), 49; https://doi.org/10.3390/pharmaceutics18010049 - 30 Dec 2025
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Abstract
Background/Objectives: Chromium (III) oxide nanoparticles possess unique chemical properties, making them increasingly valuable in pharmaceutical applications, which had been neglected until the last few years. However, their use requires stable dispersion and surface functionalization to ensure their biocompatibility. This study aimed to [...] Read more.
Background/Objectives: Chromium (III) oxide nanoparticles possess unique chemical properties, making them increasingly valuable in pharmaceutical applications, which had been neglected until the last few years. However, their use requires stable dispersion and surface functionalization to ensure their biocompatibility. This study aimed to synthesise, characterise, and determine the biocompatibility and antioxidant properties of chromium oxide nanoparticles coated with a natural, plant-derived stabilising agent: chia seed mucilage extract. Methods: The synthesised nanoparticles were characterised using X-ray diffraction (XRD), scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDS), Fourier-transform infrared (FTIR) spectroscopy, and laser diffraction scattering particle size analysis (LD-PSA). Biological and biochemical assessments were conducted by the DPPH and FRAP assays to quantify antioxidant scavenging abilities and the Artemia salina lethality test for preliminary biocompatibility evaluation. Results: XRD, FTIR, and EDS confirmed the successful synthesis of pure chromium oxide NPs (CrNPs) and their effective coating by the chia mucilage (CM) extract. SEM analysis determined that a 4:1 mass ratio (CrNPs to CM) produced the most consistent morphology and narrowest size distribution, yielding spherical particles approximately 50 nm in diameter. LD-PSA confirmed the coating and identified a hydrodynamic diameter of approximately 0.110 µm. Biological and biochemical assays showed high antioxidant activity, with over 80% free radical scavenging at concentrations of 250 μg/mL and 50 μg/mL. Furthermore, the biocompatibility assessment showed survival rates above 90% across all tested concentrations. Conclusions: The findings confirm that chia seed mucilage extract can serve as an effective, biocompatible coating agent for chromium (III) oxide nanoparticles. The resulting functionalized particles exhibit exquisite biocompatibility and significant antioxidant potential, supporting their further development for pharmaceutical use. Full article
(This article belongs to the Special Issue Advanced Nanomaterials for Drug Delivery, 2nd Edition)
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