Search Results (13)

Understanding the genetic basis of economically important traits is essential for enhancing the productivity, fertility, and health of dairy cattle. This study aimed to identify the pleiotropic genes associated with the 305-day milk yield (MY305), days open (DO), and milk fat-to-protein ratio (FPR) in Thai-Holstein crossbred dairy cattle using a genome-wide association study (GWAS) approach. The dataset included 18,843 records of MY305 and milk FPR, as well as 48,274 records of DO, collected from first-lactation Thai-Holstein crossbred dairy cattle. A total of 868 genotyped animals and 43,284 informative SNPs out of 50,905 were used for the analysis. The single-nucleotide polymorphism (SNP) effects were evaluated using a weighted single-step GWAS (wssGWAS), which estimated these effects based on genomic breeding values (GEBVs) through a multi-trait animal model with single-step genomic BLUP (ssGBLUP). Genomic regions explaining at least 5% of the total genetic variance were selected for candidate gene analysis. Single-step genomic REML (ssGREML) with a multi-trait animal model was used to estimate components of (co)variance. The heritability estimates from additive genetic variance were 0.262 for MY305, 0.029 for DO, and 0.102 for milk FPR, indicating a moderate genetic influence on milk yield and a lower genetic impact on fertility and milk FPR. The genetic correlations were 0.559 (MY305 and DO), −0.306 (MY305 and milk FPR), and −0.501 (DO and milk FPR), indicating potential compromises in genetic selection. wssGBLUP showed a higher accuracy than ssGBLUP, although the improvement was modest. A total of 24, 46, and 33 candidate genes were identified for MY305, DO, and milk FPR, respectively. Pleiotropic effects, identified by SNPs showing significant influence with more than trait, were observed in 14 genes shared among all three traits, 17 genes common between MY305 and DO, 14 genes common between MY305 and milk FPR, and 26 genes common between DO and milk FPR. Overall, wssGBLUP is a promising approach for improving the genomic prediction of economic traits in multi-trait analyses, outperforming ssGBLUP. This presents a viable alternative for genetic evaluation in dairy cattle breeding programs in Thailand. However, further studies are needed to validate these candidate genes and refine marker selection for production, fertility, and health traits in dairy cattle. Full article

Days open (DO) is a critical economic and reproductive trait that is commonly employed in genetic selection. Making improvements using conventional genetic techniques is exceedingly challenging. Therefore, new techniques are required to improve the accuracy of genetic selection using genomic data. This study examined the genetic approaches of traditional AIREML and single-step genomic AIREML (ssGAIREML) to assess genetic parameters and the accuracy of estimated breeding values while also investigating SNP regions associated with DO and identifying candidate genes through a genome-wide association study (GWAS). The dataset included 59415 DO records from 36368 Thai–Holstein crossbred cows and 882 genotyped animals. The cows were classified according to their Holstein genetic proportion (breed group, BG) as follows: BG1 (>93.7% Holstein genetics), BG2 (87.5% to 93.6% Holstein genetics), and BG3 (<87.5% Holstein genetics). AIREML was utilized to estimate genetic parameters and variance components. The results of this study reveal that the average DO values for BG1, BG2, and BG3 were 97.64, 97.25, and 96.23 days, respectively. The heritability values were estimated to be 0.02 and 0.03 for the traditional AIREML and ssGAIREML approaches, respectively. Depending on the dataset, the ssGAIREML method produced more accurate estimated breeding values than the traditional AIREML method, ranging from 40.5 to 45.6%. The highest values were found in the top 20% of the dam dataset. For the GWAS, we found 12 potential candidate genes (DYRK1A, CALCR, MIR489, MIR653, SLC36A1, GNA14, GNAQ, TRNAC-GCA, XYLB, ACVR2B, SLC22A14, and EXOC2) that are believed to have a significant influence on days open. In summary, the ssGAIREML method has the potential to enhance the accuracy and heritability of reproductive values compared to those obtained using conventional AIREML. Consequently, it is a viable alternative for transitioning from conventional methodologies to the ssGAIREML method in the breeding program for dairy cattle in Thailand. Moreover, the 12 identified potential candidate genes can be utilized in future studies to select markers for days open in regard to dairy cattle. Full article

This study evaluates the effects of substituting cassava pulp with broken rice and cassava chips in the total mixed ration silage diets of beef cattle on feed composition, ensiling quality, digestibility, and energy utilization. Fifteen Holstein Thai native crossbred (89% Bos taurus × 11% Bos indicus) steers in the fattening phase, with an average age of 2.5 ± 0.1 years and an initial body weight of 603.7 ± 14.3 kg, were used in the energy balance trial. Using a randomized complete block design with five replications, the steers received one of three treatments. The three dietary treatments included substituting cassava pulp with cassava chips and broken rice on a dry matter basis with ratios of 50:0:0, 30:20:0, or 10:20:20. The results show that broken rice is a superior nutrient source and provides greater energy balance (p < 0.01). Despite the cost implications, substituting cassava pulp and chips positively impacts the ensilage pH and reduces the acetic acid concentration (p < 0.01). There was an increase in the lactic acid bacteria count (p < 0.05) and a reduction in the rumen ammonia, propionate, and butyrate concentrations (p < 0.05) without adverse effects (p > 0.05) on digestibility, blood metabolites, or enteric methane emissions. These findings suggest that broken rice is a promising alternative grain-rich ruminant feed. Future research should explore on-farm long-term feeding and economic evaluations to provide a more comprehensive understanding of the practical implications. Full article

This study determines the effects of varying dietary metabolizable energy densities on Holstein Friesian and Charolais crossbred beef cattle in fattening phases. The research focuses on nutrient utilization, ruminal fermentation, growth performance, carcass traits, and meat quality. Thirty-six steers were used in the feeding trial that lasted for six months according to a 2 × 3 factorial arrangement in a randomized complete block design (Factor A, cattle breeds (Holstein Frisian, Charolais crossbred); B, metabolizable energy density (10.5, 11.1 and 11.8 MJ/kg DM)) with six replications. The dietary energy density had no interaction with the cattle breeds (p > 0.05). Despite fewer carcass yields, Holstein Friesian crossbreds indicate superior eating quality to Charolais crossbreds on drip loss, meat iron content, and Warner–Bratzler shear force due to increased intramuscular fat content (p < 0.05) with similar meat color (p > 0.05). Increased dietary energy density positively impacts nutrient and energy intake and rumen fermentation (p < 0.05) but did not affect growth and carcass traits (p > 0.05). This research suggests the potential of Holstein Friesian crossbreds for intensive beef production, providing valuable insights into optimal feeding strategies for achieving quality meat outcomes. On-farm feeding trials are needed to develop a practical and economical Thai beef feedlot management system Full article

Reproductive traits are important traits that directly affect a farmer’s income and are difficult to improve upon using traditional genetic methods. Therefore, there is a need to consider new options for increasing the accuracy of the genetic selection of dairy cows. The objective of this study was to compare the genetic methods of the traditional BLUP and ssGBLUP techniques in terms of the estimated genetic parameters and accuracy of the estimated breeding values. The data comprised 101,331 services per conception (NSPC) records from 54,027 Thai–Holstein crossbred cows, 109,233 pedigree data, and 770 genotyped animals. A Bayesian analysis via threshold Gibbs sampling was used to analyze the estimated variance components and genetic parameters. The results showed that the means of the NSPC data were 2.21, 2.31, and 2.42 for less than 87.5% for Holstein genetics (breed group; BG1), 87.5 to 93.6% for Holstein genetics (BG2), and greater than 93.7% for Holstein genetics (BG3), respectively. The estimated heritability values were 0.038 and 0.051, and the repeatability values were 0.149 and 0.157 for the traditional BLUP and ssGBLUP methods, respectively. The accuracy of the estimated breeding values from the ssGBLUP method was higher than that from the traditional BLUP method, ranging from 6.05 to 17.69%, depending on the dataset, especially in the top 20% of the bull dataset had the highest values. In conclusion, the ssGBLUP method could improve the heritability value and accuracy of the breeding values compared with the traditional BLUP method. Therefore, switching from traditional methods to the ssGBLUP method for the Thai dairy cattle breeding program is a viable option. Full article

This study aimed to evaluate (1) the net energy for lactation of broken rice in dairy cows and (2) the effects of broken rice substituting in diets on feed intake, nutrient energy utilization, and milk production. An energy metabolism experiment was conducted using a respiration chamber system in four multiparous Holstein crossbred cows (88.6% Holstein × 11.4% Native Thai; body weight of 438 ± 16.0 kg; 70 ± 31 days in milk) according to a 4 × 4 Latin square design with four 21-d periods. The four dietary treatments included a basal diet substitution with broken rice at 0%, 12%, 24%, and 36%. Increasing the substitution rate of broken rice in the diet resulted in unaffected feed intake, milk yield and composition, and energy balance (p > 0.05); however, a linear increase in the digestibility of dry matter, organic matter, and neutral detergent fiber (p < 0.05). The estimated net energy for lactation of broken rice was 8.68 MJ/kg. The net energy requirement for maintenance was estimated at 504 kJ/kg of metabolic body weight. Our results indicated that broken rice is a good energy-feed resource and that increasing the proportion in the diet up to 36% had no adverse effect on dairy cows’ production performance. Full article

This study investigated the effects of substituting rice straw with cassava in total mixed ration silage on feed intake, digestibility, rumen fermentation, ruminating activity, and energy balance. An energy balance experiment was conducted to determine nutrient and energy utilization in dairy bulls. Four Holstein Friesian (HF) crossbred young bulls (93.19% HF × 6.81% Native Thai; average age of 12.08 ± 0.22 months and body weight of 266 ± 9.80 kg) were used in a 4 × 4 Latin square design with four 28-d periods. The four dietary treatments included substituting cassava with rice straw on a 50, 150, 250, and 350 g/kg dry matter basis. Increasing the amount of cassava in the diet resulted in linearly decreased rumination behaviors and enteric methane emissions (p < 0.05) but a linear increase in feed intake and digestibility, total volatile fatty acid concentration, and propionic acid: acetic acid ratio in the rumen fluid (p < 0.05), thus leading to a greater energy balance status (p < 0.01). Our results indicated that replacing cassava with rice straw from 5% to 35% in the ration of Holstein bulls resulted in a substantial reduction in physically effective fiber and chewing time but improved nutrient and energy supply. The metabolizable energy requirement for the maintenance of crossbred dairy bulls was estimated to be 599.9 kJ/kg metabolic body weight and the efficiency of metabolizable energy used for growth was 0.88. We concluded that cassava is a good energy feed resource for Holstein crossbred bulls in the tropics. Full article

The purpose of this experiment was to examine the effects of MFL supplementation on feed intake, nutrient digestibility, milk yield, and milk composition in early lactating dairy cows. Twelve, Thai crossbred Holstein Friesian cows in early lactation, 500 ± 30 kg of body weight (BW), were randomly assigned according to a completely randomized design (CRD). MFL supplementation levels of 0, 100, 200, and 300 mL/d were used as treatments. Experimental animals were fed a total mixed ration (TMR) with a roughage to concentrate ratio (R:C ratio) of 40:60, which contains 12% crude protein (CP) and 70% total digestible nutrient (TDN). Rice straw was a roughage source. MFL supplementation levels had no effect (p > 0.05) on body weight change and dry matter intake (DMI) expressed as %BW, whereas DMI expressed as metabolic body weight (BW^0.75) was linearly (p < 0.05) increased, with the highest at 200 mL/d in the YFL supplementation group (147.5 g/kg BW^0.75), whereas feed intake of organic matter (OM), CP, ether extract (EE), neutral detergent fiber (NDF) and acid detergent fiber (ADF) did not significant (p > 0.05) difference among treatments. Related to apparent digestibility, MFL levels did not affect (p > 0.05) on DM, OM, and EE digestibility, while apparent digestibility of CP, NDF, and ADF were linearly increased (p < 0.05) when increasing MFL supplementation levels, and the highest (p < 0.05) were the 200 and 300 mL/d FML supplemented groups. BUN at 0 h post feeding did not show a significant difference (p > 0.05) between treatments, while at 4 h after feeding, BUN was linearly (p < 0.05) increased from 0, 100, 200, and 300 (mL/day) MFL supplementation, the values were 12.9, 13.1, 19.7, and 18.4 mg/dL, respectively and the highest was 200 mL/head/day for the MFL supplemented group. MFL supplementation did not affect (p > 0.05) milk fat, lactose, solid not fat (SNF), and specific gravity of milk, while MFL supplementation at 200 mL/day caused a linear increase (p < 0.01) in BUN, MUN, milk yield, milk protein, total solids (TS) and 3.5% FCM when supplement levels were increased. In conclusion, MFL supplementation in early lactating dairy cows could improve feed intake, nutrient digestibility, milk yield, and milk composition. Full article

The objective of the present study was to analyze the effects of yeast-fermented rubber seed kernels (YERSEK) on the feed intake, hematology, microbial protein synthesis, milk yield, and milk composition in dairy cows. Six crossbred Holstein Friesian (HF) × Thai lactating dairy cows with 110 ± 10 days in milk were randomly assigned to three different amounts of YERSEK at 0%, 10%, and 20% in a concentrate mixture using a 3 × 3 repeated Latin square design. Cows were fed with concentrate diets at a concentrate-to-milk yield ratio of 1:1.5, with rice straw fed ad libitum. The inclusion of YERSEK did not adversely affect feed intake, nutrient intake, or digestibility (p > 0.05), whereas ether extract intake and digestibility linearly increased in dairy cows receiving YERSEK (p < 0.01). Increasing YERSEK levels did not adversely affect blood urea nitrogen (BUN) levels, hematological parameters, or microbial protein synthesis (p > 0.05). Supplementation of YERSEK did not influence milk production, lactose, or protein levels (p > 0.05). However, milk fat and total solids decreased linearly (p < 0.05) with the addition of YERSEK. In conclusion, in a concentrate diet, YERSEK could be used as a protein source without negative effects on feed intake, digestibility, hematology, microbial protein synthesis, or milk yield. However, it reduced the milk fat and total solids of tropical lactating dairy cows. Full article

Thailand is a tropical country affected by global climate change and has high temperatures and humidity that cause heat stress in livestock. A temperature–humidity index (THI) is required to assess and evaluate heat stress levels in livestock. One of the livestock types in Thailand experiencing heat stress due to extreme climate change is crossbred dairy cattle. Genetic evaluations of heat tolerance in dairy cattle have been carried out for reproductive traits. Heritability values for reproductive traits are generally low (<0.10) because environmental factors heavily influence them. Consequently, genetic improvement for these traits would be slow compared to production traits. Positive and negative genetic correlations were found between reproductive traits and reproductive traits and yield traits. Several selection methods for reproductive traits have been introduced, i.e., the traditional method, marker-assisted selection (MAS), and genomic selection (GS). GS is the most promising technique and provides accurate results with a high genetic gain. Single-step genomic BLUP (ssGBLUP) has higher accuracy than the multi-step equivalent for fertility traits or low-heritability traits. Full article

Heat stress is becoming a significant problem in dairy farming, especially in tropical countries, making accurate genetic selection for heat tolerance a priority. This study investigated the effect of heat stress manifestation on genetics for milk yield, milk quality, and dairy health traits with and without genomic information using single-step genomic best linear unbiased prediction (ssGBLUP) and BLUP in Thai−Holstein crossbred cows. The dataset contained 104,150 test-day records from the first lactation of 15,380 Thai−Holstein crossbred cows. A multiple-trait random regression test-day model on a temperature−humidity index (THI) function was used to estimate the genetic parameters and genetic values. Heat stress started at a THI of 76, and the heritability estimates ranged from moderate to low. The genetic correlation between those traits and heat stress in both BLUP methods was negative. The accuracy of genomic predictions in the ssGBLUP method was higher than the BLUP method. In conclusion, heat stress negatively impacted milk production, increased the somatic cell score, and disrupted the energy balance. Therefore, in dairy cattle genetic improvement programs, heat tolerance is an important trait. The new genetic evaluation method (ssGBLUP) should replace the traditional method (BLUP) for more accurate genetic selection. Full article

Heat stress strongly negatively affects reproductive traits in dairy cattle. The purpose of the present study was to investigate the effect of heat stress in superstimulated Thai-Holstein crossbreds under tropical climate conditions. Data included 75 records from 12 superovulated Thai-Holstein crossbreds between 2018 and 2020. Cows were superstimulated with conventional treatment. The mean temperature-humidity index (THI) was evaluated for three data collection periods: during the 9, 21 and 42-day periods before the insemination day to determine the period in which THI mostly affected superstimulation responses. The THI levels/thresholds were determined and interpreted together with the superovulatory response. A significantly negative correlation was obtained for the THI during the period 9 days before insemination. Negative effects on the number of large follicles and corpora lutea began at a THI of 72 and were apparently severe after a THI of 77, similar to the ovulation rate, fertilized ova and transferable embryos (p < 0.05). Meanwhile, more degenerated embryos were found with THI values (p < 0.05). The superovulatory response in Thai-Holstein crossbreds under tropical climate conditions is highly affected by heat stress starting at a THI of 72 and becomes more severe at a THI higher than 77. Full article

The aim of the present research was to determine the influence of sulfur and urea combined with fresh cassava root in fermented total mixed ration (FTMR) on digestibility, fermentation in the rumen, blood metabolite, milk yield, and milk quality in tropical lactating dairy cows. Four mid-lactation Thai Holstein–Friesian crossbred cows were studied. Pre-experiment milk yield was 12.7 ± 0.30 kg/day, and the body weight was 495 ± 40.0 kg. Animals were evaluated in a 2 × 2 factorial in a 4 × 4 Latin square design to receive diets followed by: factor A, which was a dose of sulfur inclusion at 1.0% and 2.0%, and factor B, which was level of urea inclusion at 1.25% and 2.5% DM in FTMR. The hydrogen cyanide (HCN) concentrations reduced 99.3% to 99.4% compared with fresh cassava root when FTMR was supplemented with 1.0% and 2.0% sulfur, respectively. Intake of crude protein was increased based on urea level addition (p < 0.05). Blood thiocyanate concentration was increased by 21.6% when sulfur was supplemented at 2.0% compared to 1.0% (p < 0.05). There was no difference in protozoal concentration, whereas bacterial populations at 4 h after feeding were significantly greater by 6.1% with the FTMR supplemented with 2.0% sulfur and 2.5% urea (p < 0.01). Allantoin concentrations, excretion, absorption, and microbial crude protein showed significant interactions between sulfur levels and urea levels in cows fed diets supplemented with 2.0% sulfur and 2.5% urea (p < 0.05). The molar ratios of the volatile fatty acid (VFA) profile were affected by dietary FTMR (p < 0.01). Furthermore, propionic acid increased by 4.6% when diets were supplemented by 2.5% sulfur (p < 0.01). Milk fat and total solids increased when feed was supplemented with 2.0% sulfur and 2.5% urea (p < 0.05). The diets supplemented with 2.0% sulfur levels resulted in greater concentrations of milk thiocyanate (p < 0.05). The somatic cell count was significantly reduced throughout the experiment with increasing sulfur supplementation (p < 0.05). Animals fed diets supplemented with 2.0% sulfur exhibited a decreased somatic cell count by 18.3% compared with those fed diets supplemented with 1.0% sulfur. Thus, inclusion of 2.0% sulfur with 2.5% urea in FTMR containing fresh cassava root improved digestibility, ruminal fermentation, microbial crude protein synthesis, and milk qualities in dairy cows. Full article