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Keywords = TREK current

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18 pages, 2688 KiB  
Article
Generalized Hierarchical Co-Saliency Learning for Label-Efficient Tracking
by Jie Zhao, Ying Gao, Chunjuan Bo and Dong Wang
Sensors 2025, 25(15), 4691; https://doi.org/10.3390/s25154691 - 29 Jul 2025
Viewed by 101
Abstract
Visual object tracking is one of the core techniques in human-centered artificial intelligence, which is very useful for human–machine interaction. State-of-the-art tracking methods have shown their robustness and accuracy on many challenges. However, a large amount of videos with precisely dense annotations are [...] Read more.
Visual object tracking is one of the core techniques in human-centered artificial intelligence, which is very useful for human–machine interaction. State-of-the-art tracking methods have shown their robustness and accuracy on many challenges. However, a large amount of videos with precisely dense annotations are required for fully supervised training of their models. Considering that annotating videos frame-by-frame is a labor- and time-consuming workload, reducing the reliance on manual annotations during the tracking models’ training is an important problem to be resolved. To make a trade-off between the annotating costs and the tracking performance, we propose a weakly supervised tracking method based on co-saliency learning, which can be flexibly integrated into various tracking frameworks to reduce annotation costs and further enhance the target representation in current search images. Since our method enables the model to explore valuable visual information from unlabeled frames, and calculate co-salient attention maps based on multiple frames, our weakly supervised methods can obtain competitive performance compared to fully supervised baseline trackers, using only 3.33% of manual annotations. We integrate our method into two CNN-based trackers and a Transformer-based tracker; extensive experiments on four general tracking benchmarks demonstrate the effectiveness of our method. Furthermore, we also demonstrate the advantages of our method on egocentric tracking task; our weakly supervised method obtains 0.538 success on TREK-150, which is superior to prior state-of-the-art fully supervised tracker by 7.7%. Full article
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18 pages, 3881 KiB  
Article
Osmotically Sensitive TREK Channels in Rat Articular Chondrocytes: Expression and Functional Role
by Arturo Ponce, Alejandro Ogazon del Toro, Lidia Jimenez, Maria Luisa Roldan and Liora Shoshani
Int. J. Mol. Sci. 2024, 25(14), 7848; https://doi.org/10.3390/ijms25147848 - 18 Jul 2024
Cited by 1 | Viewed by 3323
Abstract
Articular chondrocytes are the primary cells responsible for maintaining the integrity and functionality of articular cartilage, which is essential for smooth joint movement. A key aspect of their role involves mechanosensitive ion channels, which allow chondrocytes to detect and respond to mechanical forces [...] Read more.
Articular chondrocytes are the primary cells responsible for maintaining the integrity and functionality of articular cartilage, which is essential for smooth joint movement. A key aspect of their role involves mechanosensitive ion channels, which allow chondrocytes to detect and respond to mechanical forces encountered during joint activity; nonetheless, the variety of mechanosensitive ion channels involved in this process has not been fully resolved so far. Because some members of the two-pore domain potassium (K2P) channel family have been described as mechanosensors in other cell types, in this study, we investigate whether articular chondrocytes express such channels. RT-PCR analysis reveals the presence of TREK-1 and TREK-2 channels in these cells. Subsequent protein expression assessments, including Western blotting and immunohistochemistry, confirm the presence of TREK-1 in articular cartilage samples. Furthermore, whole-cell patch clamp assays demonstrate that freshly isolated chondrocytes exhibit currents attributable to TREK-1 channels, as evidenced by activation by arachidonic acid (AA) and ml335 and further inhibition by spadin. Additionally, exposure to hypo-osmolar shock activates currents, which can be attributed to the presence of TREK-1 channels, as indicated by their inhibition with spadin. Therefore, these findings highlight the expression of TREK channels in rat articular chondrocytes and suggest their potential involvement in regulating the integrity of cartilage extracellular matrix. Full article
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18 pages, 5678 KiB  
Article
Importance of Forest Ecosystem within Important Plant Areas (IPAs) for the Development of Nature-Based Tourism—A Case Study of Fruška Gora National Park
by Vladica Ristić, Igor Trišić, Snežana Štetić, Florin Nechita, Adina Nicoleta Candrea, Nevena Majstorović and Vladimir Tomašević
Forests 2024, 15(7), 1213; https://doi.org/10.3390/f15071213 - 12 Jul 2024
Cited by 5 | Viewed by 2042
Abstract
Botanical areas under international protection are important for preserving plant and animal ecosystems. Forest ecosystems within Important Plant Areas (IPAs) are essential for preserving biological and species diversity. In AP Vojvodina (Northern Serbia), there are 27 IPAs, totaling 328,208 ha. Fruška Gora National [...] Read more.
Botanical areas under international protection are important for preserving plant and animal ecosystems. Forest ecosystems within Important Plant Areas (IPAs) are essential for preserving biological and species diversity. In AP Vojvodina (Northern Serbia), there are 27 IPAs, totaling 328,208 ha. Fruška Gora National Park (FGNP) territory is under international protection as an IPA. A large part of this park is covered by a forest ecosystem comprising various deciduous and evergreen trees, shrubs, and grasses. The forest ecosystem in FGNP is rich with natural attractions that are important for hiking, mountaineering, trekking, scientific tourism, wildlife, bird and animal watching, and community tourism. In this article, the authors used a quantitative method of collecting and processing data obtained through survey research. For this research, 610 respondents (325 residents and 285 visitors) were surveyed. Using questionnaires, the respondents expressed their opinions about the tourism potential of FGNP, as well as the satisfaction of tourists with current tourism development. The research results indicate that the forest ecosystem within the FGNP and IPA area has an important potential for the development of nature-based tourism (NbT) and that this tourism form significantly affects not only the satisfaction of the respondents but also increased awareness of the preservation and protection of these areas. Full article
(This article belongs to the Special Issue Forest Recreation and Ecotourism)
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17 pages, 4216 KiB  
Article
Drug-Inducible Gene Therapy Effectively Reduces Spontaneous Seizures in Kindled Rats but Creates Off-Target Side Effects in Inhibitory Neurons
by Kyle A. Sullivan, Iuliia Vitko, Kathryn Blair, Ronald P. Gaykema, Madison J. Failor, Jennifer M. San Pietro, Deblina Dey, John M. Williamson, Ruth L. Stornetta, Jaideep Kapur and Edward Perez-Reyes
Int. J. Mol. Sci. 2023, 24(14), 11347; https://doi.org/10.3390/ijms241411347 - 12 Jul 2023
Cited by 5 | Viewed by 2470
Abstract
Over a third of patients with temporal lobe epilepsy (TLE) are not effectively treated with current anti-seizure drugs, spurring the development of gene therapies. The injection of adeno-associated viral vectors (AAV) into the brain has been shown to be a safe and viable [...] Read more.
Over a third of patients with temporal lobe epilepsy (TLE) are not effectively treated with current anti-seizure drugs, spurring the development of gene therapies. The injection of adeno-associated viral vectors (AAV) into the brain has been shown to be a safe and viable approach. However, to date, AAV expression of therapeutic genes has not been regulated. Moreover, a common property of antiepileptic drugs is a narrow therapeutic window between seizure control and side effects. Therefore, a long-term goal is to develop drug-inducible gene therapies that can be regulated by clinically relevant drugs. In this study, a first-generation doxycycline-regulated gene therapy that delivered an engineered version of the leak potassium channel Kcnk2 (TREK-M) was injected into the hippocampus of male rats. Rats were electrically stimulated until kindled. EEG was monitored 24/7. Electrical kindling revealed an important side effect, as even low expression of TREK M in the absence of doxycycline was sufficient to cause rats to develop spontaneous recurring seizures. Treating the epileptic rats with doxycycline successfully reduced spontaneous seizures. Localization studies of infected neurons suggest seizures were caused by expression in GABAergic inhibitory neurons. In contrast, doxycycline increased the expression of TREK-M in excitatory neurons, thereby reducing seizures through net inhibition of firing. These studies demonstrate that drug-inducible gene therapies are effective in reducing spontaneous seizures and highlight the importance of testing for side effects with pro-epileptic stressors such as electrical kindling. These studies also show the importance of evaluating the location and spread of AAV-based gene therapies in preclinical studies. Full article
(This article belongs to the Special Issue Molecular and Cellular Mechanisms of Epilepsy 2.0)
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20 pages, 4602 KiB  
Article
Evaluating the Effectiveness of Environmental Interpretation in National Parks Based on Visitors’ Spatiotemporal Behavior and Emotional Experience: A Case Study of Pudacuo National Park, China
by Chunwen Xie, Minyan Zhao, Yu Li, Tiantian Tang, Zichao Meng and Yan Ding
Sustainability 2023, 15(10), 8027; https://doi.org/10.3390/su15108027 - 15 May 2023
Cited by 5 | Viewed by 2605
Abstract
Problems such as global environmental pollution and climate change have made the public’s desire for nature and closeness to greenery increasingly strong amid rapid urbanization. Improving the ability of experiential environmental interpretation products and services is the basis for national parks to meet [...] Read more.
Problems such as global environmental pollution and climate change have made the public’s desire for nature and closeness to greenery increasingly strong amid rapid urbanization. Improving the ability of experiential environmental interpretation products and services is the basis for national parks to meet the public’s needs, and the evaluation of their effectiveness is a necessary basis for optimizing the quality of environmental interpretation services in response to the current problems of unsynchronized environmental interpretation facilities and service levels. Using Pudacuo National Park as a case study, 365 visitors’ spatio-temporal trajectories with GPS devices and questionnaire data were collected, and the interaction changes of visitors’ external spatiotemporal behaviors and internal emotional experiences were analyzed using cluster analysis, GPS geoprocessing model construction, and emotional mean calculation methods, and the results showed that (1) Pudacuo National Park visitors mainly comprise four types of visitor clusters, which are the sightseeing type, trekking + sightseeing type, cruise type, and hiking + cruise type, as well as four types of spatio-temporal behavior patterns; the differences of visitors’ spatiotemporal behavior patterns are reflected in spatial movement, time allocation, and stopping behavior, and correspond to different emotional experience intensity. (2) Emotional experience value is positively correlated with location stay time, and emotional experience intensity is higher, corresponding to spatio-temporal behavior patterns with longer trajectory distance, longer dwell time, and more stopping behaviors, indicating that environmental services promote longer visitor stopping time and generate high-quality recreation experiences. (3) Finally, we proposed the optimization of environmental interpretation mode according to the spatiotemporal emotional differences of different types of visitor clusters. This study provides a basis for improving the quality of visitor experience and optimizing the quality of environmental interpretation services and provides a useful reference for guiding the construction of high-quality and diverse ecological experiences in national parks. Full article
(This article belongs to the Special Issue Sustainable Tourism Development and Tourist Behavior)
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13 pages, 252 KiB  
Article
The Efficacy and Limits of Pilgrimage as Therapy for Depression
by Rozheanne Cruz Hilario and Chadwick Co Sy Su
Religions 2023, 14(2), 181; https://doi.org/10.3390/rel14020181 - 30 Jan 2023
Cited by 3 | Viewed by 3964
Abstract
Western notions of pilgrimage produce images of religious adherence to known beliefs and their ritual expressions. Definitions of pilgrimage have expanded in recent decades to embrace treks to sites unattached to the sacred landscapes of traditional faith groups. Along with this expansion of [...] Read more.
Western notions of pilgrimage produce images of religious adherence to known beliefs and their ritual expressions. Definitions of pilgrimage have expanded in recent decades to embrace treks to sites unattached to the sacred landscapes of traditional faith groups. Along with this expansion of meanings and practices has come a wider acceptance of travel for psychological transformation. Tourism can be argued as a modulated form of pilgrimage and traditional journeys of faith overlapping with instances of entirely secular tourism. Another purpose of pilgrimage can be as a therapeutic practice for those suffering from depressive disorders and related conditions. Its efficacy as therapy, along with its limits, are discussed in clinical and personal contexts with a view to including religious as well as secular perspectives. The pragmatics of such therapy are mapped against current trends in treatment. Full article
(This article belongs to the Special Issue Sacred Journeys: Religious Tourism and Pilgrimage Volume II)
16 pages, 4972 KiB  
Article
Multiple Effects of Echinochrome A on Selected Ion Channels Implicated in Skin Physiology
by Sung Eun Kim, Elina Da Sol Chung, Elena A. Vasileva, Natalia P. Mishchenko, Sergey A. Fedoreyev, Valentin A. Stonik, Hyoung Kyu Kim, Joo Hyun Nam and Sung Joon Kim
Mar. Drugs 2023, 21(2), 78; https://doi.org/10.3390/md21020078 - 23 Jan 2023
Cited by 5 | Viewed by 3131
Abstract
Echinochrome A (Ech A), a naphthoquinoid pigment from sea urchins, is known to have anti-inflammatory and analgesic effects that have been suggested to be mediated by antioxidant activity and intracellular signaling modulation. In addition to these mechanisms, the ion channels in keratinocytes, immune [...] Read more.
Echinochrome A (Ech A), a naphthoquinoid pigment from sea urchins, is known to have anti-inflammatory and analgesic effects that have been suggested to be mediated by antioxidant activity and intracellular signaling modulation. In addition to these mechanisms, the ion channels in keratinocytes, immune cells, and nociceptive neurons may be the target for the pharmacological effects. Here, using the patch clamp technique, we investigated the effects of Ech A on the Ca2+-permeable TRPV3, TRPV1 and Orai1 channels and the two-pore domain K+ (K2P) channels (TREK/TRAAK, TASK-1, and TRESK) overexpressed in HEK 293 cells. Ech A inhibited both the TRPV3 and Orai1 currents, with IC50 levels of 2.1 and 2.4 μM, respectively. The capsaicin-activated TRPV1 current was slightly augmented by Ech A. Ech A alone did not change the amplitude of the TREK-2 current (ITREK2), but pretreatments with Ech A markedly facilitated ITREK2 activation by 2-APB, arachidonic acid (AA), and acidic extracellular pH (pHe). Similar facilitation effects of Ech A on TREK-1 and TRAAK were observed when they were stimulated with 2-APB and AA, respectively. On the contrary, Ech A did not affect the TRESK and TASK-1 currents. Interestingly, the ITREK2 maximally activated by the combined application of 2-APB and Ech A was not inhibited by norfluoxetine but was still completely inhibited by ruthenium red. The selective loss of sensitivity to norfluoxetine suggested an altered molecular conformation of TREK-2 by Ech A. We conclude that the Ech A-induced inhibition of the Ca2+-permeable cation channels and the facilitation of the TREK/TRAAK K2P channels may underlie the analgesic and anti-inflammatory effects of Ech A. Full article
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26 pages, 14241 KiB  
Review
Astrocytic Glutamatergic Transmission and Its Implications in Neurodegenerative Disorders
by Sairaj Satarker, Sree Lalitha Bojja, Prasada Chowdari Gurram, Jayesh Mudgal, Devinder Arora and Madhavan Nampoothiri
Cells 2022, 11(7), 1139; https://doi.org/10.3390/cells11071139 - 28 Mar 2022
Cited by 53 | Viewed by 11293
Abstract
Several neurodegenerative disorders involve impaired neurotransmission, and glutamatergic neurotransmission sets a prototypical example. Glutamate is a predominant excitatory neurotransmitter where the astrocytes play a pivotal role in maintaining the extracellular levels through release and uptake mechanisms. Astrocytes modulate calcium-mediated excitability and release several [...] Read more.
Several neurodegenerative disorders involve impaired neurotransmission, and glutamatergic neurotransmission sets a prototypical example. Glutamate is a predominant excitatory neurotransmitter where the astrocytes play a pivotal role in maintaining the extracellular levels through release and uptake mechanisms. Astrocytes modulate calcium-mediated excitability and release several neurotransmitters and neuromodulators, including glutamate, and significantly modulate neurotransmission. Accumulating evidence supports the concept of excitotoxicity caused by astrocytic glutamatergic release in pathological conditions. Thus, the current review highlights different vesicular and non-vesicular mechanisms of astrocytic glutamate release and their implication in neurodegenerative diseases. As in presynaptic neurons, the vesicular release of astrocytic glutamate is also primarily meditated by calcium-mediated exocytosis. V-ATPase is crucial in the acidification and maintenance of the gradient that facilitates the vesicular storage of glutamate. Along with these, several other components, such as cystine/glutamate antiporter, hemichannels, BEST-1, TREK-1, purinergic receptors and so forth, also contribute to glutamate release under physiological and pathological conditions. Events of hampered glutamate uptake could promote inflamed astrocytes to trigger repetitive release of glutamate. This could be favorable towards the development and worsening of neurodegenerative diseases. Therefore, across neurodegenerative diseases, we review the relations between defective glutamatergic signaling and astrocytic vesicular and non-vesicular events in glutamate homeostasis. The optimum regulation of astrocytic glutamatergic transmission could pave the way for the management of these diseases and add to their therapeutic value. Full article
(This article belongs to the Special Issue Glutamatergic Transmission: Role of Astrocytes in Health and Disease)
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20 pages, 6162 KiB  
Article
The Protective Effects of Hydrogen Sulfide New Donor Methyl S-(4-Fluorobenzyl)-N-(3,4,5-Trimethoxybenzoyl)-l-Cysteinate on the Ischemic Stroke
by Jing Fan, Junxi Du, Zhongwei Zhang, Wenjing Shi, Binyan Hu, Jiaqin Hu, Yan Xue, Haipeng Li, Wenjin Ji, Jian Zhuang, Pengcheng Lv, Kui Cheng and Kun Chen
Molecules 2022, 27(5), 1554; https://doi.org/10.3390/molecules27051554 - 25 Feb 2022
Cited by 14 | Viewed by 2958
Abstract
In this paper, we report the design, synthesis and biological evaluation of a novel S-allyl-l-cysteine (SAC) and gallic acid conjugate S-(4-fluorobenzyl)-N-(3,4,5-trimethoxybenzoyl)-l-cysteinate (MTC). We evaluate the effects on ischemia-reperfusion-induced PC12 cells, primary neurons in neonatal rats, [...] Read more.
In this paper, we report the design, synthesis and biological evaluation of a novel S-allyl-l-cysteine (SAC) and gallic acid conjugate S-(4-fluorobenzyl)-N-(3,4,5-trimethoxybenzoyl)-l-cysteinate (MTC). We evaluate the effects on ischemia-reperfusion-induced PC12 cells, primary neurons in neonatal rats, and cerebral ischemic neuronal damage in rats, and the results showed that MTC increased SOD, CAT, GPx activity and decreased LDH release. PI3K and p-AKT protein levels were significantly increased by activating PI3K/AKT pathway. Mitochondrial pro-apoptotic proteins Bax and Bim levels were reduced while anti-apoptotic protein Bcl-2 levels were increased. The levels of cleaved caspase-9 and cleaved caspase-3 were also reduced in the plasma. The endoplasmic reticulum stress (ERS) was decreased, which in turns the survival rate of nerve cells was increased, so that the ischemic injury of neurons was protected accordingly. MTC activated the MEK-ERK signaling pathway and promoted axonal regeneration in primary neurons of the neonatal rat. The pretreatment of MEK-ERK pathway inhibitor PD98059 and PI3K/AKT pathway inhibitor LY294002 partially attenuated the protective effect of MTC. Using a MCAO rat model indicated that MTC could reduce cerebral ischemia-reperfusion injury and decrease the expression of proinflammatory factors. The neuroprotective effect of MTC may be due to inhibition of the over-activation of the TREK-1 channel and reduction of the current density of the TREK1 channel. These results suggested that MTC has a protective effect on neuronal injury induced by ischemia reperfusion, so it may have the potential to become a new type of neuro-ischemic drug candidate. Full article
(This article belongs to the Section Medicinal Chemistry)
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15 pages, 866 KiB  
Article
“We Are Young, We Run Free”: Predicting Factors of Life Satisfaction among Young Backpackers
by Tehila Refaeli, Shlomit Weiss-Dagan, Drorit Levy and Haya Itzhaky
Int. J. Environ. Res. Public Health 2022, 19(3), 1429; https://doi.org/10.3390/ijerph19031429 - 27 Jan 2022
Cited by 3 | Viewed by 3198
Abstract
Although research from a positive psychology perspective is conducted among different populations, few studies have examined the predictors of life satisfaction among young backpackers. The current study focused on young adults (ages 21–30), an age group for whom backpacking treks are a growing [...] Read more.
Although research from a positive psychology perspective is conducted among different populations, few studies have examined the predictors of life satisfaction among young backpackers. The current study focused on young adults (ages 21–30), an age group for whom backpacking treks are a growing phenomenon, during their treks in the Far East and South America. Direct and indirect models were used to identify personal factors and environmental resources contributing to life satisfaction. After at least one month abroad, 318 young adults (M = 23.76) answered a self-report quantitative questionnaire. The findings show that personal resources, social support, and community participation were positively associated with life satisfaction, and risk-taking behaviors were negatively associated with life satisfaction. Social support and community participation partially mediated the association between risk-taking behaviors and life satisfaction and between personal resources and life satisfaction. The implications of the findings for the subjective well-being of young backpackers during their transition to adulthood include, among others, the need to help young backpackers maintain their personal and social resources as valuable assets for coping with challenges during their trips. It is also important to increase awareness of the possible wide-ranging negative effects of risk-taking behaviors during backpacking trips. Full article
(This article belongs to the Special Issue Tourism/Hospitality and Well-being)
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46 pages, 5776 KiB  
Review
Two-Pore-Domain Potassium (K2P-) Channels: Cardiac Expression Patterns and Disease-Specific Remodelling Processes
by Felix Wiedmann, Norbert Frey and Constanze Schmidt
Cells 2021, 10(11), 2914; https://doi.org/10.3390/cells10112914 - 27 Oct 2021
Cited by 30 | Viewed by 6343
Abstract
Two-pore-domain potassium (K2P-) channels conduct outward K+ currents that maintain the resting membrane potential and modulate action potential repolarization. Members of the K2P channel family are widely expressed among different human cell types and organs where they were shown [...] Read more.
Two-pore-domain potassium (K2P-) channels conduct outward K+ currents that maintain the resting membrane potential and modulate action potential repolarization. Members of the K2P channel family are widely expressed among different human cell types and organs where they were shown to regulate important physiological processes. Their functional activity is controlled by a broad variety of different stimuli, like pH level, temperature, and mechanical stress but also by the presence of lipids or pharmacological agents. In patients suffering from cardiovascular diseases, alterations in K2P-channel expression and function have been observed, suggesting functional significance and a potential therapeutic role of these ion channels. For example, upregulation of atrial specific K2P3.1 (TASK-1) currents in atrial fibrillation (AF) patients was shown to contribute to atrial action potential duration shortening, a key feature of AF-associated atrial electrical remodelling. Therefore, targeting K2P3.1 (TASK-1) channels might constitute an intriguing strategy for AF treatment. Further, mechanoactive K2P2.1 (TREK-1) currents have been implicated in the development of cardiac hypertrophy, cardiac fibrosis and heart failure. Cardiovascular expression of other K2P channels has been described, functional evidence in cardiac tissue however remains sparse. In the present review, expression, function, and regulation of cardiovascular K2P channels are summarized and compared among different species. Remodelling patterns, observed in disease models are discussed and compared to findings from clinical patients to assess the therapeutic potential of K2P channels. Full article
(This article belongs to the Special Issue Electrical Remodeling in Cardiac Disease)
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27 pages, 1834 KiB  
Review
Negative Influence by the Force: Mechanically Induced Hyperpolarization via K2P Background Potassium Channels
by Miklós Lengyel, Péter Enyedi and Gábor Czirják
Int. J. Mol. Sci. 2021, 22(16), 9062; https://doi.org/10.3390/ijms22169062 - 23 Aug 2021
Cited by 13 | Viewed by 4109
Abstract
The two-pore domain K2P subunits form background (leak) potassium channels, which are characterized by constitutive, although not necessarily constant activity, at all membrane potential values. Among the fifteen pore-forming K2P subunits encoded by the KCNK genes, the three members of the [...] Read more.
The two-pore domain K2P subunits form background (leak) potassium channels, which are characterized by constitutive, although not necessarily constant activity, at all membrane potential values. Among the fifteen pore-forming K2P subunits encoded by the KCNK genes, the three members of the TREK subfamily, TREK-1, TREK-2, and TRAAK are mechanosensitive ion channels. Mechanically induced opening of these channels generally results in outward K+ current under physiological conditions, with consequent hyperpolarization and inhibition of membrane potential-dependent cellular functions. In the past decade, great advances have been made in the investigation of the molecular determinants of mechanosensation, and members of the TREK subfamily have emerged among the best-understood examples of mammalian ion channels directly influenced by the tension of the phospholipid bilayer. In parallel, the crucial contribution of mechano-gated TREK channels to the regulation of membrane potential in several cell types has been reported. In this review, we summarize the general principles underlying the mechanical activation of K2P channels, and focus on the physiological roles of mechanically induced hyperpolarization. Full article
(This article belongs to the Special Issue Mechanosensitive Ion Channels in Health and Disease)
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34 pages, 3118 KiB  
Review
Channelling the Force to Reprogram the Matrix: Mechanosensitive Ion Channels in Cardiac Fibroblasts
by Leander Stewart and Neil A. Turner
Cells 2021, 10(5), 990; https://doi.org/10.3390/cells10050990 - 23 Apr 2021
Cited by 57 | Viewed by 8539
Abstract
Cardiac fibroblasts (CF) play a pivotal role in preserving myocardial function and integrity of the heart tissue after injury, but also contribute to future susceptibility to heart failure. CF sense changes to the cardiac environment through chemical and mechanical cues that trigger changes [...] Read more.
Cardiac fibroblasts (CF) play a pivotal role in preserving myocardial function and integrity of the heart tissue after injury, but also contribute to future susceptibility to heart failure. CF sense changes to the cardiac environment through chemical and mechanical cues that trigger changes in cellular function. In recent years, mechanosensitive ion channels have been implicated as key modulators of a range of CF functions that are important to fibrotic cardiac remodelling, including cell proliferation, myofibroblast differentiation, extracellular matrix turnover and paracrine signalling. To date, seven mechanosensitive ion channels are known to be functional in CF: the cation non-selective channels TRPC6, TRPM7, TRPV1, TRPV4 and Piezo1, and the potassium-selective channels TREK-1 and KATP. This review will outline current knowledge of these mechanosensitive ion channels in CF, discuss evidence of the mechanosensitivity of each channel, and detail the role that each channel plays in cardiac remodelling. By better understanding the role of mechanosensitive ion channels in CF, it is hoped that therapies may be developed for reducing pathological cardiac remodelling. Full article
(This article belongs to the Special Issue Biomechanical Signaling and Fibrosis)
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14 pages, 1045 KiB  
Article
Detection of Highly Divergent Tandem Repeats in the Rice Genome
by Eugene V. Korotkov, Anastasiya M. Kamionskya and Maria A. Korotkova
Genes 2021, 12(4), 473; https://doi.org/10.3390/genes12040473 - 25 Mar 2021
Cited by 9 | Viewed by 2801
Abstract
Currently, there is a lack of bioinformatics approaches to identify highly divergent tandem repeats (TRs) in eukaryotic genomes. Here, we developed a new mathematical method to search for TRs, which uses a novel algorithm for constructing multiple alignments based on the generation of [...] Read more.
Currently, there is a lack of bioinformatics approaches to identify highly divergent tandem repeats (TRs) in eukaryotic genomes. Here, we developed a new mathematical method to search for TRs, which uses a novel algorithm for constructing multiple alignments based on the generation of random position weight matrices (RPWMs), and applied it to detect TRs of 2 to 50 nucleotides long in the rice genome. The RPWM method could find highly divergent TRs in the presence of insertions or deletions. Comparison of the RPWM algorithm with the other methods of TR identification showed that RPWM could detect TRs in which the average number of base substitutions per nucleotide (x) was between 1.5 and 3.2, whereas T-REKS and TRF methods could not detect divergent TRs with x > 1.5. Applied to the search of TRs in the rice genome, the RPWM method revealed that TRs occupied 5% of the genome and that most of them were 2 and 3 bases long. Using RPWM, we also revealed the correlation of TRs with dispersed repeats and transposons, suggesting that some transposons originated from TRs. Thus, the novel RPWM algorithm is an effective tool to search for highly divergent TRs in the genomes. Full article
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19 pages, 20230 KiB  
Article
Spadin Modulates Astrocytic Passive Conductance via Inhibition of TWIK-1/TREK-1 Heterodimeric Channels
by Yeonju Bae, Jae Hyouk Choi, Kanghyun Ryoo, Ajung Kim, Osung Kwon, Hyun-Gug Jung, Eun Mi Hwang and Jae-Yong Park
Int. J. Mol. Sci. 2020, 21(24), 9639; https://doi.org/10.3390/ijms21249639 - 17 Dec 2020
Cited by 8 | Viewed by 3209
Abstract
Astrocytes, the most abundant cell type in the brain, are non-excitable cells and play critical roles in brain function. Mature astrocytes typically exhibit a linear current–voltage relationship termed passive conductance, which is believed to enable astrocytes to maintain potassium homeostasis in the brain. [...] Read more.
Astrocytes, the most abundant cell type in the brain, are non-excitable cells and play critical roles in brain function. Mature astrocytes typically exhibit a linear current–voltage relationship termed passive conductance, which is believed to enable astrocytes to maintain potassium homeostasis in the brain. We previously demonstrated that TWIK-1/TREK-1 heterodimeric channels mainly contribute to astrocytic passive conductance. However, the molecular identity of astrocytic passive conductance is still controversial and needs to be elucidated. Here, we report that spadin, an inhibitor of TREK-1, can dramatically reduce astrocytic passive conductance in brain slices. A series of gene silencing experiments demonstrated that spadin-sensitive currents are mediated by TWIK-1/TREK-1 heterodimeric channels in cultured astrocytes and hippocampal astrocytes from brain slices. Our study clearly showed that TWIK-1/TREK-1-heterodimeric channels can act as the main molecular machinery of astrocytic passive conductance, and suggested that spadin can be used as a specific inhibitor to control astrocytic passive conductance. Full article
(This article belongs to the Special Issue Glial Ion Channels and Transporters in Health and Disease)
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