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Keywords = Styrax japonicus

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19 pages, 5293 KiB  
Article
Root Ethylene and Abscisic Acid Responses to Flooding Stress in Styrax japonicus: A Transcriptomic Perspective
by Chao Han, Jinghan Dong, Gaoyuan Zhang, Qinglin Zhu and Fangyuan Yu
Plants 2025, 14(12), 1870; https://doi.org/10.3390/plants14121870 - 18 Jun 2025
Viewed by 434
Abstract
Global climate change has led to an increased frequency of extreme weather events, with flooding caused by heavy rainfall posing a significant threat to plant growth and survival. Styrax japonicus, a species of ecological and economic importance, exhibits stronger flooding tolerance compared [...] Read more.
Global climate change has led to an increased frequency of extreme weather events, with flooding caused by heavy rainfall posing a significant threat to plant growth and survival. Styrax japonicus, a species of ecological and economic importance, exhibits stronger flooding tolerance compared to its congener Styrax tonkinensis. Endogenous hormonal systems in plants are indispensable for integrating growth dynamics, developmental transitions, and ecological stress perception-transduction pathways. To investigate the response of S. japonicus to flooding stress at both hormonal and molecular levels, this study utilized annual seedlings of S. japonicus as experimental material. Two levels of flooding stress, waterlogging and submergence, were applied to examine the variations in endogenous hormone levels in S. japonicus roots under different stress conditions and durations. Combined with transcriptome sequencing, critical genes associated with hormone-mediated signaling and biosynthetic processes were identified. The results showed that the content of the ethylene precursor ACC exhibited a trend of “increase–decrease–increase”, with an earlier decline under submergence compared to waterlogging stress by approximately 10 days. Abscisic acid content sharply decreased at 5 d, followed by an initial increase and subsequent decrease, with higher ABA levels observed under waterlogging stress than under submergence. GA content significantly decreased after 10 d in both stress conditions. KEGG enrichment analysis revealed that the most prominently enriched pathway for DEGs was plant hormone signal transduction under both waterlogging and submergence stress, with 314 and 370 DEGs identified, respectively. Analysis of common genes indicated their association with ethylene, ABA, auxin, and BRs. After further investigation of DEGs in the ethylene and ABA biosynthesis process, we identified key enzyme genes encoding ACS, ACO, and NCED, which are critical for their biosynthesis. Full article
(This article belongs to the Section Plant Molecular Biology)
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11 pages, 4064 KiB  
Article
Morphological and Molecular Evidence for a New Species Within Styrax (Styracaceae) from a Karst Area in Southwest Guangxi, China
by Guoxing Peng, Tongjun Liang, Jipeng Liang, Yitian Wang, Liaocheng Zhao, Rui Zhang, Yusong Huang, Zhi Li, Weibin Xu and Ming Tang
Plants 2025, 14(12), 1789; https://doi.org/10.3390/plants14121789 - 11 Jun 2025
Viewed by 412
Abstract
Styrax chongzuoensis, a novel endemic species with a narrow distribution in limestone regions of Chongzuo, Guangxi, China, is described herein. This new species seems somewhat similar to Styrax fortunei, but significantly differs from it by having long ovate or long lanceolate [...] Read more.
Styrax chongzuoensis, a novel endemic species with a narrow distribution in limestone regions of Chongzuo, Guangxi, China, is described herein. This new species seems somewhat similar to Styrax fortunei, but significantly differs from it by having long ovate or long lanceolate leaves, often with an asymmetrical base (vs. obovate-elliptic to elliptic, often with a symmetrical base) and fertile shoots with fewer flowers (1, or rarely 2 or 3, vs. many, always more than 10). Phylogenetic analyses based on the chloroplast coding sequences indicated that S. chongzuoensis and Styrax japonicus are sister taxa to each other, both clustered in the series Cyrta within Styrax. Overall, the integration of morphological and phylogenetic evidence indicates that S. chongzuoensis actually represents a new species. Color plates of S. chongzuoensis are illustrated, and a distribution map and conservation assessment of this species are also provided. Full article
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19 pages, 6312 KiB  
Review
Styrax spp.: Habitat, Phenology, Phytochemicals, Biological Activity and Applications
by Antonello Paparella, Annalisa Serio, Liora Shaltiel-Harpaz, Bharadwaj Revuru, Prasada Rao Kongala and Mwafaq Ibdah
Plants 2025, 14(5), 746; https://doi.org/10.3390/plants14050746 - 1 Mar 2025
Viewed by 1690
Abstract
Styrax is the largest genus of the family Styracaceae, with about 130 species distributed across America, Europe, and Southeast Asia. The oleo-resin of these woody shrubs, called Styrax benzoin, has a long tradition of use as incense and in therapeutics, which has stimulated [...] Read more.
Styrax is the largest genus of the family Styracaceae, with about 130 species distributed across America, Europe, and Southeast Asia. The oleo-resin of these woody shrubs, called Styrax benzoin, has a long tradition of use as incense and in therapeutics, which has stimulated research and industrial applications. Many studies have been carried out on the biological applications of different Styrax species, but some gaps still remain to be filled, particularly regarding the phenology and the biological activity and application in different fields. Hence, this review gathers updated and valuable information on the distribution and phenology of Styrax spp., considering their phytochemicals, biological activity, current and possible applications in medicine, animal feeding, energy production, and the food industry. Overall, Styrax obassia and Styrax japonicus are the most studied, but Styrax officinalis has been thoroughly investigated for its phytochemicals. The recent literature highlights promising applications in oncology and also as an energy crop. The data described in this review could be useful in upgrading the quantity and quality of Styrax benzoin, as well as expanding knowledge on emerging applications, such as bio-pesticides or the development of active packaging for the food industry. Full article
(This article belongs to the Section Phytochemistry)
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18 pages, 8420 KiB  
Article
Intraspecific Differentiation of Styrax japonicus (Styracaceae) as Revealed by Comparative Chloroplast and Evolutionary Analyses
by Hao-Zhi Zheng, Wei Dai, Meng-Han Xu, Yu-Ye Lin, Xing-Li Zhu, Hui Long, Li-Li Tong and Xiao-Gang Xu
Genes 2024, 15(7), 940; https://doi.org/10.3390/genes15070940 - 18 Jul 2024
Cited by 4 | Viewed by 1340
Abstract
Styrax japonicus is a medicinal and ornamental shrub belonging to the Styracaceae family. To explore the diversity and characteristics of the chloroplast genome of S. japonicus, we conducted sequencing and comparison of the chloroplast genomes of four naturally distributed S. japonicus. [...] Read more.
Styrax japonicus is a medicinal and ornamental shrub belonging to the Styracaceae family. To explore the diversity and characteristics of the chloroplast genome of S. japonicus, we conducted sequencing and comparison of the chloroplast genomes of four naturally distributed S. japonicus. The results demonstrated that the four chloroplast genomes (157,914–157,962 bp) exhibited a typical quadripartite structure consisting of a large single copy (LSC) region, a small single copy (SSC) region, and a pair of reverse repeats (IRa and IRb), and the structure was highly conserved. DNA polymorphism analysis revealed that three coding genes (infA, psbK, and rpl33) and five intergene regions (petA-psbJ, trnC-petN, trnD-trnY, trnE-trnT, and trnY-trnE) were identified as mutation hotspots. These genetic fragments have the potential to be utilized as DNA barcodes for future identification purposes. When comparing the boundary genes, a small contraction was observed in the IR region of four S. japonicus. Selection pressure analysis indicated positive selection for ycf1 and ndhD. These findings collectively suggest the adaptive evolution of S. japonicus. The phylogenetic structure revealed conflicting relationships among several S. japonicus, indicating divergent evolutionary paths within this species. Our study concludes by uncovering the genetic traits of the chloroplast genome in the differentiation of S. japonicus variety, offering fresh perspectives on the evolutionary lineage of this species. Full article
(This article belongs to the Special Issue 5Gs in Crop Genetic and Genomic Improvement: 2nd Edition)
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12 pages, 2684 KiB  
Article
Tolerance and Acclimation of the Leaves of Nine Urban Tree Species to High Temperatures
by Nao Okubo, Sumihiro Inoue and H. Roaki Ishii
Forests 2023, 14(8), 1639; https://doi.org/10.3390/f14081639 - 14 Aug 2023
Cited by 6 | Viewed by 2305
Abstract
To prepare and manage urban greenspace for a hotter future, we must select trees that can tolerate or acclimate to high temperatures. Here, we compared tolerance and acclimation to high temperatures among nine urban tree species in Japan. Saplings were exposed to heat [...] Read more.
To prepare and manage urban greenspace for a hotter future, we must select trees that can tolerate or acclimate to high temperatures. Here, we compared tolerance and acclimation to high temperatures among nine urban tree species in Japan. Saplings were exposed to heat from different times (early and mid-summer) during the growing season in a greenhouse. With the exception of Ginko, heating in early summer did not affect whole-tree health, suggesting that most urban tree species may be able to acclimate to higher temperatures during the early growing season. However, continued exposure to higher temperatures, as well as heating from mid-summer, had negative effects on tree health, leading to wilting/browning, especially for evergreen broadleaved species whose leaves mature slowly. Cornus florida, Styrax japonicus and Morella rubra were the most vulnerable to heating, such that all heated saplings had died by the end of summer. At the leaf level, leaf maturation of the deciduous species and Morella was negatively affected by heating, whereas that of Eurya emarginata and Euonymus japonicas were not affected. These two species also showed heat tolerance, having a higher T50 (temperature where leaf quantum yield declined to 50% of maximum value due to heat stress) compared to other species, as well as heat acclimation, where T50 was higher for the heated saplings compared to the control. Our results indicate that, while some species that cannot recover from heat damage in early summer could die, others can acclimate to sustained high temperatures, as well as to late summer heat. As heatwaves are expected to become more frequent and severe due to global warming, tree species need to be screened individually to assess their ability to tolerate or acclimate to high temperature. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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17 pages, 5592 KiB  
Article
Variation in the Calyx Color in Two Styrax japonicus Varieties Is Attributed to Varied Anthocyanin Levels as Revealed by Integrated Metabolomic and Transcriptomic Analyses
by Yiqian Ju, Cuiping Zhang, Wei Li, Cheng Qian, Yiming Qu, Zhuxiong Zou, Han Zhao and Lulu Li
Forests 2023, 14(7), 1413; https://doi.org/10.3390/f14071413 - 11 Jul 2023
Cited by 2 | Viewed by 1611
Abstract
Styrax japonicus is a small ornamental tree with medicinal value. An S. japonicus variety with purplish red calyxes and white petals has higher ornamental value. The mechanism underlying calyx pigmentation in S. japonicus is still unclear. In this study, metabolome data combined with [...] Read more.
Styrax japonicus is a small ornamental tree with medicinal value. An S. japonicus variety with purplish red calyxes and white petals has higher ornamental value. The mechanism underlying calyx pigmentation in S. japonicus is still unclear. In this study, metabolome data combined with transcriptome profiling were used to explore the molecular mechanisms underlying the difference in the color of calyx in two varieties of S. japonicus, namely, Red Linglong (RA; purplish red calyx) and Green Linglong (GA; green calyx). The Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis indicated that the levels of delphinidin 3,5-diglucoside, delphinidin 3-O-glucoside, and malvidin 3-O-glucoside when enriched in delphinidin biosynthesis were significantly higher in the RA calyx than in the GA calyx. These key differentially accumulated metabolites were highly correlated with five late biosynthetic genes that were enriched in the anthocyanin biosynthesis pathway. MYB1, MYB82, and MYB113 were the three probable transcription factors responsible for anthocyanin accumulation. This study provides novel insights into secondary metabolism pathways, their regulators, and the changes in the transcription and metabolite levels in the calyx of S. japonicus regulating sepal color. The results provide a theoretical basis for exploring the mechanism of calyx color formation in S. japonicus and provide genetic material and a reference for molecular breeding to obtain desired flower colors in the future. Full article
(This article belongs to the Section Genetics and Molecular Biology)
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15 pages, 4465 KiB  
Article
Involvement of GABAergic and Serotonergic Systems in the Antinociceptive Effect of Jegosaponin A Isolated from Styrax japonicus
by Lei He, Ying Zhou, Li Ma, Wencui Wang and Lei Yao
Molecules 2023, 28(5), 2243; https://doi.org/10.3390/molecules28052243 - 28 Feb 2023
Cited by 4 | Viewed by 1776
Abstract
The antinociceptive activity of the flower extracts of Styrax japonicus was confirmed in our previous study. However, the key compound for analgesia has not been distinguished, and the corresponding mechanism is obscure. In this study, the active compound was isolated from the flower [...] Read more.
The antinociceptive activity of the flower extracts of Styrax japonicus was confirmed in our previous study. However, the key compound for analgesia has not been distinguished, and the corresponding mechanism is obscure. In this study, the active compound was isolated from the flower by multiple chromatographic techniques and structurally illustrated using spectroscopic methods and referring to the related literature. The antinociceptive activity of the compound and the underlying mechanisms were investigated using animal tests. The active compound was determined to be jegosaponin A (JA), which showed significant antinociceptive responses. JA was also shown to possess sedative and anxiolytic activities but no anti-inflammatory effect, implying the association of the antinociceptive effects with the sedative and anxiolytic activities. Further antagonists and calcium ionophore tests showed that the antinociceptive effect of JA was blocked by flumazenil (FM, antagonist for GABA-A receptor) and reversed by WAY100635 (WAY, antagonist for 5-HT1A receptor). Contents of 5-HT and its metabolite (5-HIAA) increased significantly in the hippocampus and striatum tissues after JA administration. The results indicated that the antinociceptive effect of JA was regulated by the neurotransmitter system, especially GABAergic and serotonergic systems. Full article
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27 pages, 1917 KiB  
Article
Comparative Study on Flora Characteristics and Species Diversity on Dam Slopes for Sustainable Ecological Management: Cases of Eight Dams in Korea
by Gwon-Soo Bahn, Sung-Yeol Kim and Jaeyong Choi
Land 2021, 10(12), 1403; https://doi.org/10.3390/land10121403 - 19 Dec 2021
Viewed by 3686
Abstract
Dams are gray infrastructure, providing various benefits such as flood control, water supply, and power generation. In order to create the next generation of infrastructure that explores how nature can act as infrastructure to meet development and ecological sustainability, artificial plantings have been [...] Read more.
Dams are gray infrastructure, providing various benefits such as flood control, water supply, and power generation. In order to create the next generation of infrastructure that explores how nature can act as infrastructure to meet development and ecological sustainability, artificial plantings have been attempted on dam slopes in Korea since 2000. As the planted trees are now stabilized to form a forest, it is time to study the floral characteristics and functions for effective ecological management and the safety of the dams. In this study, we investigated and analyzed flora in the slopes of eight dams in Korea. The comparative study of the whole flora in both the planted zones of the slopes of dams and left and right forests of dams revealed that the number of plant species was higher in the planted zones than in the left and right forests of the same size area. The plant family containing the greatest number of species in the slopes was Asteraceae, followed by Poaceae, Fabaceae, and Rosaceae. Currently, the community structures and families in the slopes of dams exhibit the characteristics of habitats in the initial stage of vegetation succession. Our investigation of planted species and immigration species in the slopes revealed that the latter comprised 89.9%. An average of 34.4% of species were interacting with the dam slope and the left and right forests. The species diversity index on dam slopes showed a tendency to be higher as the number of planted species increased and the period time increased. Average growth heights of planted trees were identified as 0.5–1.6 m for the shrubs layer, 3.5–4.5 m for the small trees layer, and 6.0–7.2 m for the trees layer. The heights of major trees, including Pinus densiflora, Quercus spp., Prunus sargentii, Styrax japonicus, and Cornus controversa, were similar to or higher than those of their counterparts in natural forests. As a result, dam slopes were similar to natural forests, having potential as habitats for various flora. To harmoniously maintain the ecological health and safety of water resource facilities of the slopes of dams, however, it is necessary to conduct periodic and various investigations on changes of the flora and growth of trees, and actively manage them. Full article
(This article belongs to the Special Issue Landscape Based Land Solutions and Big Data)
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12 pages, 5217 KiB  
Article
A Study on Petal Morphological and Physiological Characteristics of Styrax japonicus during the Flowering Period
by Chen Chen, Hong Chen, Ming Ni and Fangyuan Yu
Agronomy 2021, 11(8), 1498; https://doi.org/10.3390/agronomy11081498 - 28 Jul 2021
Cited by 14 | Viewed by 3211
Abstract
Styrax japonicus is a small ornamental tree with medicinal values, although its flowering period is short. To date, information about the morphological and physiological characteristics of the petals during the flowering period is limited. In this study, we observed the structure of the [...] Read more.
Styrax japonicus is a small ornamental tree with medicinal values, although its flowering period is short. To date, information about the morphological and physiological characteristics of the petals during the flowering period is limited. In this study, we observed the structure of the petals at the full flowering stage with a scanning electron microscope and detected the contents of nutrients, minerals, and endogenous hormones and the activities of enzymes at different flowering stages. The results showed that the content of soluble sugar exhibited an ‘increase-decrease’ trend, whereas the contents of soluble protein, nitrogen (N), phosphorus (P), and abscisic acid (ABA) showed a ‘decrease-increase’ pattern. The content of starch descended continuously, but the contents of potassium (K), gibberellic acid (GA3), indoleacetic acid (IAA), and malondialdehyde (MDA) ascended continuously. The activities of peroxidase (POD) and superoxide dismutase (SOD) first rose and then declined during the flowering period. Higher contents of soluble sugar, N, K, and IAA promoted S. japonicus flowering; meanwhile, lower contents of starch, soluble protein, P, and GA3 in addition to the lower activity of SOD might be some of the causes of the short flowering period. This work will serve as the foundation for a scientific technique to utilize the flowers and extend the flowering period in S. japonicus. Full article
(This article belongs to the Special Issue Flowering and Flower Development in Plants)
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23 pages, 4345 KiB  
Article
Decline and Passive Restoration of Forest Vegetation Around the Yeocheon Industrial Complex of Southern Korea
by Hansol Lee, Bong Soon Lim, Dong Uk Kim, A Reum Kim, Jae Won Seol, Chi Hong Lim, Ji Hyun Kil, Jeong Sook Moon and Chang Seok Lee
Forests 2020, 11(6), 674; https://doi.org/10.3390/f11060674 - 12 Jun 2020
Cited by 9 | Viewed by 2876
Abstract
This study was carried out to clarify the vegetation decline due to air pollutants emitted in the process of industrial activities and the passive restoration of the vegetation due to socioeconomic changes after economic growth. To achieve this goal, we investigated the spatial [...] Read more.
This study was carried out to clarify the vegetation decline due to air pollutants emitted in the process of industrial activities and the passive restoration of the vegetation due to socioeconomic changes after economic growth. To achieve this goal, we investigated the spatial distribution of vegetation, differences in species composition and diversity among vegetation types different in damage degree, vegetation dynamics, the age structure and annual ring growth of two dominant plant species, and the landscape change that occurred in this area over the last 50 years. Plant communities tended to be spatially distributed in the order of grassland, shrubland (dominated by Styrax japonicus Siebold and Zucc. community), and forests (dominated by Pinus thunbergii Parl. and Pinus densiflora Siebold and Zucc. communities), with increasing distance from the pollution source. The result of stand ordination based on vegetation data reflected the trend of such a spatial distribution. Species richness evaluated based on the species rank dominance curve was the highest in shrubland and the lowest in grassland; species richness in forests was intermediate. The size class distribution of woody plant species in four plant communities composing three vegetation types showed the possibility of them being replaced by forest in the late successional stage. However, the density of successor trees was relatively low, whereas the density of shrubby plants, which are resilient to air pollution, was very high. The age class distribution of a dominant species forming shrubland and pine forest showed that most of them were recruited after industrialization in this area. The period when young individuals in both vegetation types were recruited corresponded to the period when the annual ring growth of the pine trees that survived air pollution was reduced. An analysis of the landscape change in this area indicated that coniferous forest and agricultural field decreased greatly, whereas industrial area, residential area, mixed forest, and broadleaved forest showed increasing trends since construction of the industrial complex. As a result, the decrease in coniferous forest is usually due to vegetation decline and partially to succession, as the pine trees dominating the forest are not only sensitive to air pollution but are also shade-intolerant. The increase in mixed and broadleaved forests reflects vegetation decline or succession. Vegetation decline progressed for about 30 years after the construction of the industrial complex; it has begun to be restored passively since then, although the change has been slow. These results are in line with the environmental Kuznets curve hypothesis that environmental degradation increases in the early stages of economic growth to a certain point, and, after a turning point, economic development leads to environmental improvements—thus, there is an inverted U-shaped relationship between economic growth and environmental degradation. Full article
(This article belongs to the Special Issue Forest Ecosystem Restoration on Postindustrial Sites)
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14 pages, 3081 KiB  
Article
Changes of Tree Species Composition and Distribution Patterns in Mts. Jiri and Baegun, Republic of Korea over 15 Years
by Boknam Lee, Juhan Park, Hoontaek Lee, Tae Kyung Kim, Sunhee Cho, Jongguk Yoon and Hyun Seok Kim
Forests 2020, 11(2), 186; https://doi.org/10.3390/f11020186 - 7 Feb 2020
Cited by 4 | Viewed by 3313
Abstract
Long-term changes in the abundance and distribution of tree species in the temperate forests of South Korea remain poorly understood. We investigated the changes in tree species composition in temperate mountainous forests using survey data from 130 permanent plots (0.1 ha) from the [...] Read more.
Long-term changes in the abundance and distribution of tree species in the temperate forests of South Korea remain poorly understood. We investigated the changes in tree species composition in temperate mountainous forests using survey data from 130 permanent plots (0.1 ha) from the past 15 years (1998–2012) distributed across Mts. Jiri and Baegun, South Korea. The tree communities showed positive net changes in terms of stand density, richness, diversity, and evenness. At the species level, the change in relative species composition has been mainly driven by species such as Quercus mongolica, Carpinus laxiflora, Quercus serrata, Quercus variabilis, Styrax japonicus, Lindera erythrocarpa, and Pinus densiflora. These changes were categorized into five groups representing gradual increase or decrease, establishment, extinction, or fluctuation in species populations. At the community level, the changes in species composition showed consistent and directional increases in the annual rate of change for the mean species traits, including stand prevalence, pole growth rate, adult growth rate, and adult stature. Based on additive models, topographic variables (elevation, latitude, longitude, slope, topographic wetness index, and curvature) were more strongly associated with the distribution of species diversity than climate variables (annual mean minimum and maximum temperatures, temperature seasonality, annual rainfall, rainfall seasonality). Elevation was the most significant driver, followed by latitude and longitude. This study reveals the dynamics of change in tree species composition and distribution along topographical and climate gradients in South Korea and contributes to a broader understanding of temperate forest ecosystems for the purpose of better forest management. Full article
(This article belongs to the Special Issue Forest Stand Dynamics and Its Applications)
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12 pages, 3626 KiB  
Article
Transcriptomic Identification of Floral Transition and Development-Associated Genes in Styrax japonicus
by Wei Li, Zhengzhao Xu, Cuiping Zhang, Xinqiang Jiang and Kuiling Wang
Forests 2020, 11(1), 10; https://doi.org/10.3390/f11010010 - 19 Dec 2019
Cited by 6 | Viewed by 2330
Abstract
Styrax japonicus (S. japonicus) is an important flowering tree species in temperate regions, and it is regarded as a nectariferous plant. However, there have been few studies to date analyzing floral development in this species. In order to understand gene expression [...] Read more.
Styrax japonicus (S. japonicus) is an important flowering tree species in temperate regions, and it is regarded as a nectariferous plant. However, there have been few studies to date analyzing floral development in this species. In order to understand gene expression dynamics during S. japonicus flower development, we; therefore, prepared cDNA libraries from three distinct stages of S. japonicus. Illumina sequencing generated 31,471 differentially expressed unigenes during flower development. We additionally conducted pathway enrichment analyses using the GO and KEGG database in order to assess the functions of genes differentially expressed during different stages of the floral development process, revealing these genes to be associated with pathways including phytohormone signaling, Transcription factor, protein kinase, and circadian rhythms. In total, 4828 TF genes, 8402 protein kinase genes, and 78 DEGs related to hormone pathways were identified in flower development stages. Six genes were selected for confirmation of expression levels using quantitative real-time PCR. The gene expression data presented herein represent the most comprehensive dataset available regarding the flowering of S. japonicus, thus offering a reference for future studies of the flowering of this and other Styracaceae species. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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14 pages, 3288 KiB  
Article
De Novo Transcriptomic Analysis and Development of EST–SSRs for Styrax japonicus
by Wei Li, Cuiping Zhang, Xinqiang Jiang, Qingchao Liu, Qinghua Liu and Kuiling Wang
Forests 2018, 9(12), 748; https://doi.org/10.3390/f9120748 - 30 Nov 2018
Cited by 24 | Viewed by 3437
Abstract
Styrax japonicus sieb. et Zucc. is widely distributed in China with ornamental and medicinal values. However, the transcriptome of S. japonicus has not yet been reported. In this study, we carried out the first transcriptome analysis of S. japonicus and developed a set [...] Read more.
Styrax japonicus sieb. et Zucc. is widely distributed in China with ornamental and medicinal values. However, the transcriptome of S. japonicus has not yet been reported. In this study, we carried out the first transcriptome analysis of S. japonicus and developed a set of expressed sequence tag–simple sequence repeats (EST–SSRs). We obtained 338,570,222 clean reads in total, of which the mean GC content was 41.58%. In total, 136,071 unigenes were obtained having an average length of 611 bp and 71,226 unigenes were favorably annotated in the database. In total, we identified 55,977 potential EST–SSRs from 38,611 unigenes, of which there was 1 SSR per 6.73 kb. The di-nucleotide repeats (40.40%) were the most identified SSRs. One set of 60 primer pairs was randomly selected, and the amplified products in S. japonicus were validated; 28 primer pairs successfully produced clear amplicons. A total of 21 (35%) polymorphic genic SSR markers were identified between two populations. In total, 15 alleles were detected and the average number was 6. The average of observed heterozygosity and expected heterozygosity was 0.614 and 0.552, respectively. The polymorphism information content (PIC) value fluctuated between 0.074 and 0.855, with a mean value of 0.504, which was also the middle level. This study provides useful information for diversity studies and resource assessments of S. japonicus. Full article
(This article belongs to the Section Forest Ecophysiology and Biology)
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