Search Results (13)

Sugarcane is one of the most economically important crops, particularly in Brazil, which is the largest sugarcane producer globally. Sugarcane smut, caused by the fungus Sporisorium scitamineum (Syd.), is a major disease of this crop. This study investigated the response of 165 sugarcane genotypes to smut infection under greenhouse conditions using the needle-bud puncture method. The disease incidence, the Area Under the Disease Progress Curve (AUDPC), and the relative Area Under the Disease Progress Curve (rAUDPC) were calculated, along with broad-sense heritability (h²) and the genotype’s effects. Spearman’s correlation coefficient (r²) was used to determine the correlation between the number of corresponding genotypes with smut incidence in both the greenhouse and the field. The incidence of smut ranged from 0% to 88%, and AUDPC values varied from 0 to 500 for 131 of the 165 genotypes. Based on the rAUDPC, 54 genotypes were classified as highly resistant. The correlation between greenhouse and field disease expression was positive and moderately strong (r² = 61%), and the h² value in greenhouse conditions was 74%. The needle-bud puncture method combined with the rAUDPC values was promising for identifying susceptible genotypes and highlighting potential smut-resistant genotypes. Full article

Throughout this article, an alternative depreciation method for electric vehicles (EVs) is presented, addressing the challenge of information asymmetry—a common issue in secondary markets. The proposed method is contrasted with traditional models, such as the Straight-Line Method (SLM), the Declining Balance Method, and the Sum-of-Years Digits (SYD) method, as these classic approaches fail to adequately consider key factors such as mileage and secondary aspects like battery degradation and rapid technological obsolescence, which critically impact the residual value of used EVs. The presented approach employs an adverse selection model that incorporates buyers’ and sellers’ perceptions of vehicle quality from the information recorded on e-commerce platforms, improving the depreciation estimation. The results show that the proposed method offers greater accuracy by leveraging asymmetric information extracted from web portals. Specifically, the method identifies a characteristic intersection point, marking the moment when the model aligns most closely with the data obtained through traditional methods in terms of precision. The analysis through the density of price estimations by vehicle model year indicates that, beyond 1.8 months, the proposed model provides more reliable results than traditional methods. The proposed model allows buyers to identify undervalued assets and sellers to obtain a fair market value, mitigating the risks associated with adverse selection, reducing uncertainty, and increasing market transparency and trust. It fosters equitable pricing between buyers and sellers by addressing the implications of adverse selection, where sellers—possessing more information about the vehicle’s condition than buyers—can dominate market transactions. This model restores balance by ensuring fairer valuation based on vehicle usage, primarily addressing the lack of critical data available on e-commerce platforms, such as battery certifications, among others. Full article

The excessive extraction of groundwater is a globally significant issue, as it can lead to the permanent loss of groundwater system sustainability. Sustainable groundwater requires development that appropriately balances the needs of both humans and the environment. In this study, the exploitable groundwater (EGW) of the So-Yang-gang Dam (SYD) Basin was estimated based on simulated groundwater recharge rates using SWAT, and the sustainability of future groundwater development was evaluated under different climate change scenarios. The EGW in each sub-watershed of the SYD was estimated to range from 60 to 240 mm/year, with higher values in the upstream watersheds. A sustainability index (SI) was evaluated, ranging from 0.56 to 1.0 across various GCMs. The analysis revealed that uniform EGW across a watershed is overestimated value in sub-watersheds with low recharge rates, potentially accelerating groundwater depletion in those areas. Thus, a flexible EGW estimation approach is essential to balance groundwater conservation with human water demands. Full article

Syndecan-4 (SDC4) consists of transmembrane heparan sulfate proteoglycan (HSPG) belonging to the syndecan family. It is present in most cell types of Mammalia. Its structure contains a heparan-sulfate-modified extracellular domain, a single transmembrane domain, and a short C-terminal cytoplasmic domain. Regarding the overall cellular function of SDC4, other cells or ligands can bind to its ecto-domain. In addition, 4,5-bisphosphate phosphatidylinositol (PIP₂) or protein kinase Cα can bind to its cyto-domain to activate downstream signaling pathways. To understand the signal transduction mechanism of syndecan, it is important to know the interactions between their actual structure and function in vivo. Therefore, it is important to identify the structure of SDC4 to understand the ligand binding behavior of SDC4. In this study, expression and purification were performed to reveal structures of the short ecto-domain, the transmembrane domain, and the cytoplasmic domain of Syd4-eTC (SDC4). Solution-state NMR spectroscopy and solid-state NMR spectroscopy were used to study the structure of Syd4-eTC in membrane environments and to demonstrate the interaction between Syd4-eTC and PIP₂. Full article

Soybean rust (SBR) caused by Phakopsora pachyrhizi Syd. and P. Syd. is one of the most important foliar diseases of soybean. SBR has the potential to cause major economic damage to global and U.S. soybean production. Analysis of reactions of soybean genotypes to P. pachyrhizi is an important step towards breeding for resistance to SBR. Fifty-four diverse soybean genotypes with both known and unknown Rpp resistance genes were tested for their reactions to a Mississippi P. pachyrhizi isolate. PI 567102B (Rpp6) had a near-immune reaction with the lowest disease severity score and no sporulation. Among seventeen genotypes with resistant or incomplete resistant reddish-brown (RB) reactions, eight are improved breeding lines that are available to researchers through material transfer agreements (MTAs). Thirty-six genotypes had the susceptible TAN reaction. Four soybean lines (RN06-32-1(7-b, GC 00138-29, G01-PR16, and GC 84051-9-1) had RB reactions and significantly lower SBR severity and sporulation than three of the six resistant checks, PI 230970 (Rpp2), PI 462312 (Rpp3), and PI 459025B (Rpp4). G01-PR16 is a publicly released germplasm. This research provides new information about reactions of different soybean genotypes to a midsouthern USA isolate of P. pachyrhizi and thereby aids in breeding for resistance to SBR. Full article

A Loop-Mediated Isothermal Amplification (LAMP) assay was developed for the detection of the pine pathogen Dothistroma septosporum (G. Dorog.) M. Morelet. The specificity of the LAMP assay was tested using a selection of pine needle fungi, including Dothistroma pini Hulbary, and Lecanosticta acicola (Thüm.) Syd.; only D. septosporum DNA was amplified by the test. In terms of sensitivity, the assay was able to detect as little as 1 pg of total D. septosporum DNA. This assay enables DNA extracted from diseased host needles to be rapidly tested for the presence of D. septosporum using relatively simple to operate equipment away from a fully equipped molecular biology laboratory. Full article

The dynamic interactions between soil, weather and crop management have considerable influences on crop yield within a region, and should be considered in optimizing nitrogen (N) management. The objectives of this study were to determine the influence of soil type, weather conditions and planting density on economic optimal N rate (EONR), and to evaluate the potential benefits of site-specific N management strategies for maize production. The experiments were conducted in two soil types (black and aeolian sandy soils) from 2015 to 2017, involving different N rates (0 to 300 kg ha⁻¹) with three planting densities (55,000, 70,000, and 85,000 plant ha⁻¹) in Northeast China. The results showed that the average EONR was higher in black soil (265 kg ha⁻¹) than in aeolian sandy soil (186 kg ha⁻¹). Conversely, EONR showed higher variability in aeolian sandy soil (coefficient of variation (CV) = 30%) than in black soil (CV = 10%) across different weather conditions and planting densities. Compared with farmer N rate (FNR), applying soil-specific EONR (SS-EONR), soil- and year-specific EONR (SYS-EONR) and soil-, year-, and planting density-specific EONR (SYDS-EONR) would significantly reduce N rate by 25%, 30% and 38%, increase net return (NR) by 155 $ ha⁻¹, 176 $ ha⁻¹, and 163 $ ha⁻¹, and improve N use efficiency (NUE) by 37–42%, 52%, and 67–71% across site-years, respectively. Compared with regional optimal N rate (RONR), applying SS-EONR, SYS-EONR and SYDS-EONR would significantly reduce N application rate by 6%, 12%, and 22%, while increasing NUE by 7–8%, 16–19% and 28–34% without significantly affecting yield or NR, respectively. It is concluded that soil-specific N management has the potential to improve maize NUE compared with both farmer practice and regional optimal N management in Northeast China, especially when each year’s weather condition and planting density information is also considered. More studies are needed to develop practical in-season soil (site)-specific N management strategies using crop sensing and modeling technologies to better account for soil, weather and planting density variation under diverse on-farm conditions. Full article

Trastuzumab-emtansine (T-DM1) is an antibody-drug conjugate (ADC) approved for the treatment of HER2 (human epidermal growth factor receptor 2)-positive breast cancer. T-DM1 consists of trastuzumab covalently linked to the cytotoxic maytansinoid DM1 via a non-cleavable linker. Despite its efficacy, primary or acquired resistance frequently develops, particularly in advanced stages of the disease. Second generation ADCs targeting HER2 are meant to supersede T-DM1 by using a cleavable linker and a more potent payload with a different mechanism of action. To determine the effect of one of these novel ADCs, SYD985, on tumors resistant to T-DM1, we developed several patient-derived models of resistance to T-DM1. Characterization of these models showed that previously described mechanisms—HER2 downmodulation, impairment of lysosomal function and upregulation of drug efflux pumps—account for the resistances observed, arguing that mechanisms of resistance to T-DM1 are limited, and most of them have already been described. Importantly, SYD985 was effective in these models, showing that the resistance to first generation ADCs can be overcome with an improved design. Full article

In the current study, a total of 70 fungi were isolated from the rhizosphere soil of chilli collected from six different districts of south Karnataka, India. All the rhizospheric fungi were evaluated for its antagonistic nature against Colletotrichum capsici—the causal agent of anthracnose disease—and eight isolates were found positive. The antagonistic fungi were further characterized for the production of plant growth-promoting traits wherein five isolates were recorded positive for all the traits tested and were also positive for root colonization. All five plant growth-promoting fungi (PGPF) were subjected to molecular characterization for identification up to the species level and the accession numbers were obtained from NCBI. The five isolates, namely NBP-08, NBP-45, NBP-61, NBP-66 and NBP-67, were further experimented with on susceptible seeds to evaluate its efficacy on seed and plant growth parameters along with induction of resistance against the anthracnose disease. The evaluated PGPF offered significant enhancement in seed and plant growth parameters with maximum improvement observed in seeds treated with NBP-61. Among the PGPF isolates, NBP-61 showed the maximum protection of 78.75%, while all the other isolates also showed significant protection against anthracnose disease compared to untreated plants. The higher accumulation of lignin and callose deposition along with enhanced defense enzyme activities in the PGPF-treated challenge-inoculated seedlings authenticated the protection offered by PGPF. The study evidenced the immense ability of PGPF in eliciting disease protection and enhancement of plant growth in chilli, which may act as a possible substitute for harmful chemicals. Full article

The shrimp-farming area and shrimp yield are continuously changing in the southwestern coastal districts of Bangladesh. The three southwestern coastal districts, Bagerhat, Satkhira, and Khulna, along with Rampal, a subdistrict of Bagerhat, contribute 75% of the total shrimp yield of Bangladesh. However, the shrimp yield and farming area have declined in Bagerhat district, and the cause of this decline is uncertain. In this research, the differences in the shrimp yield were quantified using a shrimp yield dataset (SYD) and k-means classification. A supervised image classification approach was applied to quantify the spatiotemporal changes and identify the influencing factors behind the declining shrimp-farming area and yield in Rampal, Bagerhat district, using Landsat satellite archives. K-means classification reveals that, between 2015 and 2017, the shrimp yield in Bagerhat district declined significantly compared to Satkhira and Khulna. The satellite-based monitoring results affirm that the shrimp-farming area of Rampal also decreased rapidly, from 21.82% in 2013 to 6.52% in 2018. This research estimates that approximately 70% of the shrimp-farming area was lost in Rampal since December 2013. Hence, the findings of this research might motivate the responsible bodies to declare the shrimp-farming coastal area as a “shrimp zone” and implement an active policy to protect the vulnerable shrimp-farming industry and shrimp farmers, considering it is the second-largest export earning source in Bangladesh after ready-made garments. Full article

Since the discovery of the human epidermal growth factor receptor 2 (HER2) as an oncogenic driver in a subset of breast cancers and the development of HER2 directed therapies, the prognosis of HER2 amplified breast cancers has improved meaningfully. Next to monoclonal anti-HER2 antibodies and tyrosine kinase inhibitors, the antibody-drug conjugate T-DM1 is a pillar of targeted treatment of advanced HER2-positive breast cancers. Currently, several HER2 directed antibody-drug conjugates are under clinical investigation for HER2 amplified but also HER2 expressing but not amplified breast tumors. In this article, we review the current preclinical and clinical evidence of the investigational drugs A166, ALT-P7, ARX788, DHES0815A, DS-8201a, RC48, SYD985, MEDI4276 and XMT-1522. Full article

SimiaoYong’an Decoction (SYD) is a classical traditional Chinese prescription that is used for the treatment of gangrene, heat-clearing, detoxification and pain alleviation. We developed a sensitive ultra-performance liquid chromatography-tandem mass spectrum (UPLC-MS/MS) method for the simultaneous determination of seven major active ingredients of SYD extract (i.e., harpagide, chlorogenic acid, sweroside, loganin, liquiritin, angoroside C and harpagoside) in rat plasma. The preliminary steps in the plasma analysis were the addition of an internal standard such as linarin, followed by protein precipitation with methanol. Separation of the active ingredients was performed on an ACQUITY UPLC^® BEH C18 column (100 mm × 2.1 mm, 1.7 μm) at a flow rate of 0.2 mL/min with methanol/water 0.1% formic acid aqueous (V/V) as the mobile phase. Detection was performed on a triple quadrupole tandem MS (QqQ-MS) via negative ion electrospray ionization in multiple reactions monitoring (MRM) mode. All calibration curves showed good linearity (r > 0.99) over the concentration range with a low limit of quantification between 0.029 and 5.813 ng/mL. Precision was evaluated by intra-day and inter-day assays, and the percentages of the RSD were all within 8.1%. The extraction efficiency and matrix effect were 80.6–113.6% and 82.9–99.5%, respectively. The validated method was successfully applied to a pharmacokinetic study in rats after oral administration of SYD extract and the corresponding single and combined traditional Chinese medicines (TCMs). The pharmacokinetic properties of the seven ingredients showed dynamic changes due to counteraction among the different coexisting components. The established approach has proven useful in the study of the active constituents in a traditional Chinese prescription. Full article

Sugarcane (Saccharum spp.) brown rust (caused by Puccinia melanocephala Syd. & P. Syd.) was first reported in the United States in 1978 and is still one of the great challenges for sugarcane production. A better understanding of sugarcane genotypic variation in response to brown rust will help optimize breeding and selection strategies for disease resistance. Brown rust ratings were scaled from non-infection (0) to severe infection (4) with intervals of 0.5 and routinely recorded for genotypes in the first clonal selection stage of the Canal Point sugarcane breeding program in Florida. Data were collected from 14,272 and 12,661 genotypes and replicated check cultivars in 2012 and 2013, respectively. Mean rust rating, % infection, and severity in each family and progeny of female parent were determined, and their coefficients of variation (CV) within and among families (females) were estimated. Considerable variation exists in rust ratings among families or females. The families and female parents with high susceptibility or resistance to brown rust were identified and ranked. The findings of this study can help scientists to evaluate sugarcane crosses and parents for brown rust disease, to use desirable parents for crossing, and to improve genetic resistance to brown rust in breeding programs. Full article