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Keywords = PET/MRI co-registration

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18 pages, 7563 KiB  
Article
Quantitative Analysis Using PMOD and FreeSurfer for Three Types of Radiopharmaceuticals for Alzheimer’s Disease Diagnosis
by Hyun Jin Yoon, Daye Yoon, Sungmin Jun, Young Jin Jeong and Do-Young Kang
Algorithms 2025, 18(2), 57; https://doi.org/10.3390/a18020057 - 21 Jan 2025
Viewed by 1100
Abstract
In amyloid brain PET, after parcellation using the finite element method (FEM)-based algorithm FreeSurfer and voxel-based algorithm PMOD, SUVr examples can be extracted and compared. This study presents the classification SUVr threshold in PET images of F-18 florbetaben (FBB), F-18 flutemetamol (FMM), and [...] Read more.
In amyloid brain PET, after parcellation using the finite element method (FEM)-based algorithm FreeSurfer and voxel-based algorithm PMOD, SUVr examples can be extracted and compared. This study presents the classification SUVr threshold in PET images of F-18 florbetaben (FBB), F-18 flutemetamol (FMM), and F-18 florapronol (FPN) and compares and analyzes the classification performance according to computational algorithm in each brain region. PET images were co-registered after the generated MRI was registered with standard template information. Using MATLAB script, SUVr was calculated using the built-in parcellation number labeled in the brain region. PMOD and FreeSurfer with different algorithms were used to load the PET image, and after registration in MRI, it was normalized to the MRI template. The volume and SUVr of the individual gray matter space region were calculated using an automated anatomical labeling atlas. The SUVr values of eight regions of the frontal cortex (FC), lateral temporal cortex (LTC), mesial temporal cortex (MTC), parietal cortex (PC), occipital cortex (OC), anterior and posterior cingulate cortex (GCA, GCP), and composite were calculated. After calculating the correlation of SUVr using the FreeSurfer and PMOD algorithms and calculating the AUC for amyloid-positive/negative subjects, the classification ability was calculated, and the SVUr threshold was calculated using the Youden index. The correlation coefficients of FreeSurfer and PMOD SUVr calculations of the eight regions of the brain cortex were FBB (0.95), FMM (0.94), and FPN (0.91). The SUVr threshold was SUVr(LTC,min) = 1.264 and SUVr(THA,max) = 1.725 when calculated using FPN-FreeSurfer, and SUVr(MTC,min) = 1.093 and SUVr(MCT,max) = 1.564 when calculated using FPN-PMOD. The AUC comparison showed that there was no statistically significant difference (p > 0.05) in the SUVr classification results using the three radiopharmaceuticals, specifically for the LTC and OC regions in the PMOD analysis, and the LTC and PC regions in the FreeSurfer analysis. The SUVr calculation using PMOD (voxel-based algorithm) has a strong correlation with the calculation using FreeSurfer (FEM-based algorithm); therefore, they complement each other. Quantitative classification analysis with high accuracy is possible using the suggested SUVr threshold. The SUVr classification performance was good in the order of FMM, FBB, and FPN, and showed a good classification performance in the LTC region regardless of the type of radiotracer and analysis algorithm. Full article
(This article belongs to the Special Issue Algorithms in Data Classification (2nd Edition))
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17 pages, 2260 KiB  
Article
From Phantoms to Patients: Improved Fusion and Voxel-Wise Analysis of Diffusion-Weighted Imaging and FDG-Positron Emission Tomography in Positron Emission Tomography/Magnetic Resonance Imaging for Combined Metabolic–Diffusivity Index (cDMI)
by Katharina Deininger, Patrick Korf, Leonard Lauber, Robert Grimm, Ralph Strecker, Jochen Steinacker, Catharina S. Lisson, Bernd M. Mühling, Gerlinde Schmidtke-Schrezenmeier, Volker Rasche, Tobias Speidel, Gerhard Glatting, Meinrad Beer, Ambros J. Beer and Wolfgang Thaiss
Diagnostics 2024, 14(16), 1787; https://doi.org/10.3390/diagnostics14161787 - 16 Aug 2024
Viewed by 1479
Abstract
Hybrid positron emission tomography/magnetic resonance imaging (PET/MR) opens new possibilities in multimodal multiparametric (m2p) image analyses. But even the simultaneous acquisition of positron emission tomography (PET) and magnetic resonance imaging (MRI) does not guarantee perfect voxel-by-voxel co-registration due to organs and distortions, especially [...] Read more.
Hybrid positron emission tomography/magnetic resonance imaging (PET/MR) opens new possibilities in multimodal multiparametric (m2p) image analyses. But even the simultaneous acquisition of positron emission tomography (PET) and magnetic resonance imaging (MRI) does not guarantee perfect voxel-by-voxel co-registration due to organs and distortions, especially in diffusion-weighted imaging (DWI), which would be, however, crucial to derive biologically meaningful information. Thus, our aim was to optimize fusion and voxel-wise analyses of DWI and standardized uptake values (SUVs) using a novel software for m2p analyses. Using research software, we evaluated the precision of image co-registration and voxel-wise analyses including the rigid and elastic 3D registration of DWI and [18F]-Fluorodeoxyglucose (FDG)-PET from an integrated PET/MR system. We analyzed DWI distortions with a volume-preserving constraint in three different 3D-printed phantom models. A total of 12 PET/MR-DWI clinical datasets (bronchial carcinoma patients) were referenced to the T1 weighted-DIXON sequence. Back mapping of scatterplots and voxel-wise registration was performed and compared to the non-optimized datasets. Fusion was rated using a 5-point Likert scale. Using the 3D-elastic co-registration algorithm, geometric shapes were restored in phantom measurements; the measured ADC values did not change significantly (F = 1.12, p = 0.34). Reader assessment showed a significant improvement in fusion precision for DWI and morphological landmarks in the 3D-registered datasets (4.3 ± 0.2 vs. 4.6 ± 0.2, p = 0.009). Most pronounced differences were noted for the chest wall (p = 0.006), tumor (p = 0.007), and skin contour (p = 0.014). Co-registration increased the number of plausible ADC and SUV combinations by 25%. The volume-preserving elastic 3D registration of DWI significantly improved the precision of fusion with anatomical sequences in phantom and clinical datasets. The research software allowed for a voxel-wise analysis and visualization of [18F]FDG-PET/MR data as a “combined diffusivity–metabolic index” (cDMI). The clinical value of the optimized PET/MR biomarker can thus be tested in future PET/MR studies. Full article
(This article belongs to the Special Issue New Trends and Advances of MRI and PET Hybrid Imaging in Diagnostics)
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14 pages, 2484 KiB  
Article
[68Ga]Ga-PSMA and [68Ga]Ga-RM2 PET/MRI vs. Histopathological Images in Prostate Cancer: A New Workflow for Spatial Co-Registration
by Samuele Ghezzo, Ilaria Neri, Paola Mapelli, Annarita Savi, Ana Maria Samanes Gajate, Giorgio Brembilla, Carolina Bezzi, Beatrice Maghini, Tommaso Villa, Alberto Briganti, Francesco Montorsi, Francesco De Cobelli, Massimo Freschi, Arturo Chiti, Maria Picchio and Paola Scifo
Bioengineering 2023, 10(8), 953; https://doi.org/10.3390/bioengineering10080953 - 11 Aug 2023
Cited by 2 | Viewed by 2042
Abstract
This study proposed a new workflow for co-registering prostate PET images from a dual-tracer PET/MRI study with histopathological images of resected prostate specimens. The method aims to establish an accurate correspondence between PET/MRI findings and histology, facilitating a deeper understanding of PET tracer [...] Read more.
This study proposed a new workflow for co-registering prostate PET images from a dual-tracer PET/MRI study with histopathological images of resected prostate specimens. The method aims to establish an accurate correspondence between PET/MRI findings and histology, facilitating a deeper understanding of PET tracer distribution and enabling advanced analyses like radiomics. To achieve this, images derived by three patients who underwent both [68Ga]Ga-PSMA and [68Ga]Ga-RM2 PET/MRI before radical prostatectomy were selected. After surgery, in the resected fresh specimens, fiducial markers visible on both histology and MR images were inserted. An ex vivo MRI of the prostate served as an intermediate step for co-registration between histological specimens and in vivo MRI examinations. The co-registration workflow involved five steps, ensuring alignment between histopathological images and PET/MRI data. The target registration error (TRE) was calculated to assess the precision of the co-registration. Furthermore, the DICE score was computed between the dominant intraprostatic tumor lesions delineated by the pathologist and the nuclear medicine physician. The TRE for the co-registration of histopathology and in vivo images was 1.59 mm, while the DICE score related to the site of increased intraprostatic uptake on [68Ga]Ga-PSMA and [68Ga]Ga-RM2 PET images was 0.54 and 0.75, respectively. This work shows an accurate co-registration method for histopathological and in vivo PET/MRI prostate examinations that allows the quantitative assessment of dual-tracer PET/MRI diagnostic accuracy at a millimetric scale. This approach may unveil radiotracer uptake mechanisms and identify new PET/MRI biomarkers, thus establishing the basis for precision medicine and future analyses, such as radiomics. Full article
(This article belongs to the Special Issue Advances in Diagnosis and Treatment of Prostate Cancer)
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18 pages, 2757 KiB  
Review
Hybrid PET/MRI in Cerebral Glioma: Current Status and Perspectives
by Karl-Josef Langen, Norbert Galldiks, Jörg Mauler, Martin Kocher, Christian Peter Filß, Gabriele Stoffels, Cláudia Régio Brambilla, Carina Stegmayr, Antje Willuweit, Wieland Alexander Worthoff, Nadim Jon Shah, Christoph Lerche, Felix Manuel Mottaghy and Philipp Lohmann
Cancers 2023, 15(14), 3577; https://doi.org/10.3390/cancers15143577 - 12 Jul 2023
Cited by 10 | Viewed by 2885
Abstract
Advanced MRI methods and PET using radiolabelled amino acids provide valuable information, in addition to conventional MR imaging, for brain tumour diagnostics. These methods are particularly helpful in challenging situations such as the differentiation of malignant processes from benign lesions, the identification of [...] Read more.
Advanced MRI methods and PET using radiolabelled amino acids provide valuable information, in addition to conventional MR imaging, for brain tumour diagnostics. These methods are particularly helpful in challenging situations such as the differentiation of malignant processes from benign lesions, the identification of non-enhancing glioma subregions, the differentiation of tumour progression from treatment-related changes, and the early assessment of responses to anticancer therapy. The debate over which of the methods is preferable in which situation is ongoing, and has been addressed in numerous studies. Currently, most radiology and nuclear medicine departments perform these examinations independently of each other, leading to multiple examinations for the patient. The advent of hybrid PET/MRI allowed a convergence of the methods, but to date simultaneous imaging has reached little relevance in clinical neuro-oncology. This is partly due to the limited availability of hybrid PET/MRI scanners, but is also due to the fact that PET is a second-line examination in brain tumours. PET is only required in equivocal situations, and the spatial co-registration of PET examinations of the brain to previous MRI is possible without disadvantage. A key factor for the benefit of PET/MRI in neuro-oncology is a multimodal approach that provides decisive improvements in the diagnostics of brain tumours compared with a single modality. This review focuses on studies investigating the diagnostic value of combined amino acid PET and ‘advanced’ MRI in patients with cerebral gliomas. Available studies suggest that the combination of amino acid PET and advanced MRI improves grading and the histomolecular characterisation of newly diagnosed tumours. Few data are available concerning the delineation of tumour extent. A clear additive diagnostic value of amino acid PET and advanced MRI can be achieved regarding the differentiation of tumour recurrence from treatment-related changes. Here, the PET-guided evaluation of advanced MR methods seems to be helpful. In summary, there is growing evidence that a multimodal approach can achieve decisive improvements in the diagnostics of cerebral gliomas, for which hybrid PET/MRI offers optimal conditions. Full article
(This article belongs to the Special Issue Role of Novel Imaging Technique in Brain Tumors)
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14 pages, 3067 KiB  
Article
Robustness of PET Radiomics Features: Impact of Co-Registration with MRI
by Alessandro Stefano, Antonio Leal, Selene Richiusa, Phan Trang, Albert Comelli, Viviana Benfante, Sebastiano Cosentino, Maria G. Sabini, Antonino Tuttolomondo, Roberto Altieri, Francesco Certo, Giuseppe Maria Vincenzo Barbagallo, Massimo Ippolito and Giorgio Russo
Appl. Sci. 2021, 11(21), 10170; https://doi.org/10.3390/app112110170 - 30 Oct 2021
Cited by 40 | Viewed by 4224
Abstract
Radiomics holds great promise in the field of cancer management. However, the clinical application of radiomics has been hampered by uncertainty about the robustness of the features extracted from the images. Previous studies have reported that radiomics features are sensitive to changes in [...] Read more.
Radiomics holds great promise in the field of cancer management. However, the clinical application of radiomics has been hampered by uncertainty about the robustness of the features extracted from the images. Previous studies have reported that radiomics features are sensitive to changes in voxel size resampling and interpolation, image perturbation, or slice thickness. This study aims to observe the variability of positron emission tomography (PET) radiomics features under the impact of co-registration with magnetic resonance imaging (MRI) using the difference percentage coefficient, and the Spearman’s correlation coefficient for three groups of images: (i) original PET, (ii) PET after co-registration with T1-weighted MRI and (iii) PET after co-registration with FLAIR MRI. Specifically, seventeen patients with brain cancers undergoing [11C]-Methionine PET were considered. Successively, PET images were co-registered with MRI sequences and 107 features were extracted for each mentioned group of images. The variability analysis revealed that shape features, first-order features and two subgroups of higher-order features possessed a good robustness, unlike the remaining groups of features, which showed large differences in the difference percentage coefficient. Furthermore, using the Spearman’s correlation coefficient, approximately 40% of the selected features differed from the three mentioned groups of images. This is an important consideration for users conducting radiomics studies with image co-registration constraints to avoid errors in cancer diagnosis, prognosis, and clinical outcome prediction. Full article
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27 pages, 12358 KiB  
Review
Multimodal Functional Imaging for Cancer/Tumor Microenvironments Based on MRI, EPRI, and PET
by Ken-ichiro Matsumoto, James B. Mitchell and Murali C. Krishna
Molecules 2021, 26(6), 1614; https://doi.org/10.3390/molecules26061614 - 14 Mar 2021
Cited by 30 | Viewed by 6759
Abstract
Radiation therapy is one of the main modalities to treat cancer/tumor. The response to radiation therapy, however, can be influenced by physiological and/or pathological conditions in the target tissues, especially by the low partial oxygen pressure and altered redox status in cancer/tumor tissues. [...] Read more.
Radiation therapy is one of the main modalities to treat cancer/tumor. The response to radiation therapy, however, can be influenced by physiological and/or pathological conditions in the target tissues, especially by the low partial oxygen pressure and altered redox status in cancer/tumor tissues. Visualizing such cancer/tumor patho-physiological microenvironment would be a useful not only for planning radiotherapy but also to detect cancer/tumor in an earlier stage. Tumor hypoxia could be sensed by positron emission tomography (PET), electron paramagnetic resonance (EPR) oxygen mapping, and in vivo dynamic nuclear polarization (DNP) MRI. Tissue oxygenation could be visualized on a real-time basis by blood oxygen level dependent (BOLD) and/or tissue oxygen level dependent (TOLD) MRI signal. EPR imaging (EPRI) and/or T1-weighted MRI techniques can visualize tissue redox status non-invasively based on paramagnetic and diamagnetic conversions of nitroxyl radical contrast agent. 13C-DNP MRI can visualize glycometabolism of tumor/cancer tissues. Accurate co-registration of those multimodal images could make mechanisms of drug and/or relation of resulted biological effects clear. A multimodal instrument, such as PET-MRI, may have another possibility to link multiple functions. Functional imaging techniques individually developed to date have been converged on the concept of theranostics. Full article
(This article belongs to the Special Issue A New Diagnosis Tool of Cancer by Spectroscopic Analysis)
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15 pages, 3230 KiB  
Case Report
Functional Neural Changes after Low-Frequency Bilateral Globus Pallidus Internus Deep Brain Stimulation for Post-Hypoxic Cortical Myoclonus: Voxel-Based Subtraction Analysis of Serial Positron Emission
by Myung Ji Kim, So Hee Park, Kyoung Heo, Jin Woo Chang, Joong Il Kim and Won Seok Chang
Brain Sci. 2020, 10(10), 730; https://doi.org/10.3390/brainsci10100730 - 13 Oct 2020
Cited by 8 | Viewed by 2909
Abstract
Post-hypoxic myoclonus (PHM) and Lance–Adams syndrome (LAS) are rare conditions following cardiopulmonary resuscitation. The aim of this study was to identify functional activity in the cerebral cortex after a hypoxic event and to investigate alterations that could be modulated by deep brain stimulation [...] Read more.
Post-hypoxic myoclonus (PHM) and Lance–Adams syndrome (LAS) are rare conditions following cardiopulmonary resuscitation. The aim of this study was to identify functional activity in the cerebral cortex after a hypoxic event and to investigate alterations that could be modulated by deep brain stimulation (DBS). A voxel-based subtraction analysis of serial positron emission tomography (PET) scans was performed in a 34-year-old woman with chronic medically refractory PHM that improved with bilateral globus pallidus internus (Gpi) DBS implanted three years after the hypoxic event. The patient required low-frequency stimulation to show myoclonus improvement. Using voxel-based statistical parametric mapping, we identified a decrease in glucose metabolism in the prefrontal lobe including the dorsolateral, orbito-, and inferior prefrontal cortex, which was suspected to be the origin of the myoclonus from postoperative PET/magnetic resonance imaging (MRI) after DBS. Based on the present study results, voxel-based subtraction of PET appears to be a useful approach for monitoring patients with PHM treated with DBS. Further investigation and continuous follow-up on the use of PET analysis and DBS treatment for patients with PHM are necessary to help understanding the pathophysiology of PHM, or LAS. Full article
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15 pages, 917 KiB  
Review
The Molecular Effects of Ionizing Radiations on Brain Cells: Radiation Necrosis vs. Tumor Recurrence
by Vincenzo Cuccurullo, Giuseppe Danilo Di Stasio, Giuseppe Lucio Cascini, Gianluca Gatta and Cataldo Bianco
Diagnostics 2019, 9(4), 127; https://doi.org/10.3390/diagnostics9040127 - 24 Sep 2019
Cited by 47 | Viewed by 4873
Abstract
The central nervous system (CNS) is generally resistant to the effects of radiation, but higher doses, such as those related to radiation therapy, can cause both acute and long-term brain damage. The most important results is a decline in cognitive function that follows, [...] Read more.
The central nervous system (CNS) is generally resistant to the effects of radiation, but higher doses, such as those related to radiation therapy, can cause both acute and long-term brain damage. The most important results is a decline in cognitive function that follows, in most cases, cerebral radionecrosis. The essence of radio-induced brain damage is multifactorial, being linked to total administered dose, dose per fraction, tumor volume, duration of irradiation and dependent on complex interactions between multiple brain cell types. Cognitive impairment has been described following brain radiotherapy, but the mechanisms leading to this adverse event remain mostly unknown. In the event of a brain tumor, on follow-up radiological imaging often cannot clearly distinguish between recurrence and necrosis, while, especially in patients that underwent radiation therapy (RT) post-surgery, positron emission tomography (PET) functional imaging, is able to differentiate tumors from reactive phenomena. More recently, efforts have been done to combine both morphological and functional data in a single exam and acquisition thanks to the co-registration of PET/MRI. The future of PET imaging to differentiate between radionecrosis and tumor recurrence could be represented by a third-generation PET tracer already used to reveal the spatial extent of brain inflammation. The aim of the following review is to analyze the effect of ionizing radiations on CNS with specific regard to effect of radiotherapy, focusing the attention on the mechanism underling the radionecrosis and the brain damage, and show the role of nuclear medicine techniques to distinguish necrosis from recurrence and to early detect of cognitive decline after treatment. Full article
(This article belongs to the Special Issue Brain Imaging)
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