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Keywords = Japanese plum

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11 pages, 1354 KiB  
Article
Source of Explant and Light Spectrum Influence in Adventitious Shoot Regeneration of Prunus salicina Lindl. (Japanese plum)
by Carmen López-Sierra, José E. Cos-Terrer, Miriam Romero-Muñoz and Margarita Pérez-Jiménez
Plants 2025, 14(14), 2230; https://doi.org/10.3390/plants14142230 - 18 Jul 2025
Viewed by 357
Abstract
Light influence on shoot regeneration in Prunus salicina is a complex interaction that has been studied for the first time. Japanese plum plants were regenerated from calli and seeds of the scion cultivar ‘Victoria’. The effect of four different light spectra (white, blue, [...] Read more.
Light influence on shoot regeneration in Prunus salicina is a complex interaction that has been studied for the first time. Japanese plum plants were regenerated from calli and seeds of the scion cultivar ‘Victoria’. The effect of four different light spectra (white, blue, red, and mixed), along with three 6-benzyladenine (BA) concentrations (1, 1.5, and 2 mg L−1), was studied in these two sources of explants. Organogenic calli were derived from the base of stem explants of the scion cultivar ‘Victoria’, whereas cotyledons and embryogenic axis slices were used as seed explants. Calli cultured with 2 mg L−1 of BA and mixed light or 2.5 mg L−1 of BA and control light showed the highest regeneration rates, with no significant differences compared to other treatments. Seed explants exposed to 2.5 mg L−1 of BA and red light exhibited significantly higher organogenesis. In comparison, those in 1.5 mg L−1 of BA with blue light or 2.5 mg L−1 of BA with mixed/control light showed no regeneration. BA concentration did not have a significant effect in the induction of somatic shoots from any explant source. In contrast, a strong interaction between light and BA was noticed. This work presents a protocol that can be applied in transformation and editing research as light spectrum studies continue to advance. Full article
(This article belongs to the Special Issue Plant Tissue Culture and Plant Regeneration)
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20 pages, 7596 KiB  
Article
A Japanese Plum Breeding Core Collection Capturing and Exploiting Genetic Variation
by María Osorio, Sebastián Ahumada, Rodrigo Infante, Igor Pacheco, Arnau Fiol and Paulina Ballesta
Agriculture 2025, 15(13), 1369; https://doi.org/10.3390/agriculture15131369 - 26 Jun 2025
Viewed by 384
Abstract
The optimal exploitation of genetic variability is essential for the success of breeding programs and for identifying quantitative trait loci (QTLs) in genetic association studies. These benefit from populations with a high number of individuals; however, they are expensive since extensive plant maintenance, [...] Read more.
The optimal exploitation of genetic variability is essential for the success of breeding programs and for identifying quantitative trait loci (QTLs) in genetic association studies. These benefit from populations with a high number of individuals; however, they are expensive since extensive plant maintenance, characterization, and evaluation are required. Core collections offer a practical solution by reducing the number of individuals while representing the original diversity of the population. This study aimed to construct a core collection for Japanese plum to serve as pre-breeding material and enable genetic association studies for traits that are difficult to evaluate. Starting from a population of 1062 individuals genotyped by sequencing, genetic distance and allele coverage metrics were applied to construct several core collections. Genetic parameters and phenotype distribution comparisons allowed for the selection of a core collection of 108 individuals that maximized genetic variability while representative of the original population, confirmed by linkage disequilibrium and population structure analyses. Its usefulness was validated by successfully mapping flowering and maturity dates through marker–trait association. The core collection constructed here will help in the study of fruit quality traits and biotic and abiotic responses, ultimately generating molecular markers to assist the crop’s molecular breeding. Full article
(This article belongs to the Special Issue Fruit Germplasm Resource Conservation and Breeding)
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12 pages, 1010 KiB  
Article
Black Knot Unraveled: Phenotypic Characterization of Disease Resistance in Japanese Plums
by Chloe Shum, Wendy McFadden-Smith, Walid El Kayal and Jayasankar Subramanian
Horticulturae 2025, 11(5), 482; https://doi.org/10.3390/horticulturae11050482 - 30 Apr 2025
Viewed by 414
Abstract
Black knot (BK) disease, caused by Apiosporina morbosa (Schwein.) v. Arx, significantly afflicts Japanese plums (Prunus salicina L.), resulting in substantial economic losses due to its destructive invasion of branches and trunks. Phenotyping for disease severity is critical to understanding resistance and [...] Read more.
Black knot (BK) disease, caused by Apiosporina morbosa (Schwein.) v. Arx, significantly afflicts Japanese plums (Prunus salicina L.), resulting in substantial economic losses due to its destructive invasion of branches and trunks. Phenotyping for disease severity is critical to understanding resistance and susceptibility across diverse genotypes. In this study, 200 Japanese plum trees from a mixed lineage breeding program were phenotyped for BK severity using a rating scale from 0 to 5. Trees were rated by two independent raters and repeated on a second day, in early spring 2023, before leaf emergence, for peak visibility. The rating system was designed to capture varying levels of infection, with 0 representing no symptoms and 5 indicating severe infection with major effects to the tree’s overall health. Compared to data from 2015 and 2018, there was a noticeable increase in the number of heavily diseased trees relative to symptom-free trees. In 2023, the proportion of completely resistant trees remained the same as in 2018, suggesting true resistance. Median scores were calculated from four independent ratings per tree, comprised of two individuals on two different days, minimizing individual biases. Additionally, inter-rater reliability was assessed using the weighted Kappa statistic, which yielded a value of 0.903, indicating strong agreement between raters. This phenotypic assessment provides a robust dataset for correlation with genetic markers and supports further breeding efforts aimed at developing BK-resistant cultivars. Full article
(This article belongs to the Section Plant Pathology and Disease Management (PPDM))
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25 pages, 19180 KiB  
Article
Variations in Hiroshige’s Print “The Plum Garden at Kameido”
by Capucine Korenberg
Heritage 2025, 8(2), 74; https://doi.org/10.3390/heritage8020074 - 14 Feb 2025
Viewed by 1114
Abstract
This work examines variations in Utagawa Hiroshige’s “The Plum Garden at Kameido” by studying 82 surviving impressions of the print. Through comparative analysis, differences were observed across printings, driven by changes in woodblocks, block wear, colourants and printing techniques. Four distinct printing ‘states’ [...] Read more.
This work examines variations in Utagawa Hiroshige’s “The Plum Garden at Kameido” by studying 82 surviving impressions of the print. Through comparative analysis, differences were observed across printings, driven by changes in woodblocks, block wear, colourants and printing techniques. Four distinct printing ‘states’ were identified, reflecting evolving production methods and adaptations to meet commercial demands, but also woodblock wear. Early impressions preserve Hiroshige’s artistic intent more faithfully, featuring intricate printing effects, a greater number of printing steps and minimal block wear. Later states demonstrate alterations to colour schemes, reduced printing complexity, printing misalignment and woodblock anomalies, highlighting the pressures of mass production and publisher-driven decisions. Evidence of fading was observed in several impressions, indicating the original colours would have been more vibrant. This research underscores the importance of detailed analysis in understanding the material and artistic evolution of Japanese ukiyo-e prints. It offers new insights into the publication chronology of “The Plum Garden at Kameido” and calls for further studies to explore the technological, artistic and commercial factors shaping ukiyo-e printmaking. Few in-depth investigations exist that have explored the evolution of specific designs over time. Full article
(This article belongs to the Section Cultural Heritage)
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20 pages, 3500 KiB  
Article
A Validation of FruitLook Data Using Eddy Covariance in a Fully Mature and High-Density Japanese Plum Orchard in the Western Cape, South Africa
by Munashe Mashabatu, Nonofo Motsei, Nebojsa Jovanovic and Luxon Nhamo
Water 2025, 17(3), 324; https://doi.org/10.3390/w17030324 - 23 Jan 2025
Cited by 2 | Viewed by 1186
Abstract
The cultivation of Japanese plums (Prunus salicina Lindl.) in South Africa has increased over the years, yet their water use is unknown. Their cultivation in the Western Cape Province of South Africa is highly dependent on supplementary irrigation, indicating their high water [...] Read more.
The cultivation of Japanese plums (Prunus salicina Lindl.) in South Africa has increased over the years, yet their water use is unknown. Their cultivation in the Western Cape Province of South Africa is highly dependent on supplementary irrigation, indicating their high water use demand. This study used remote sensing techniques to estimate the actual evapotranspiration (ETc act) of the Japanese plums to assess their water use on a large scale. The accuracy of the procedure had to be validated before getting to tangible conclusions. The eddy covariance was used to measure ETc act in an African Delight plum orchard to validate the FruitLook remote sensing data for the 2023–2024 hydrological year and irrigation season. The seasonal and annual plum crop water requirements measured using the eddy covariance system were 751 and 996 mm, while those estimated by FruitLook were 744 and 948 mm, respectively. Although FruitLook slightly underestimated plum ETc act by a Pbias of −6.15%, it performed well with a Nash–Sutcliffe efficiency (NSE) of 0.91. FruitLook underestimated evapotranspiration mainly during the peak summer season with full vegetation cover when the model may inaccurately represent irrigation impacts, soil moisture availability, and localized advection effects, better captured by the eddy covariance system. Based on the results, FruitLook proved to be sufficiently accurate for large-scale applications to estimate evapotranspiration in Japanese plum orchards in the Western Cape. Full article
(This article belongs to the Special Issue Crop Evapotranspiration, Crop Irrigation and Water Savings)
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22 pages, 17093 KiB  
Article
Seasonal Variations in Water Use of Japanese Plum Orchards Under Micro-Sprinkler and Drip Irrigation Methods Using FruitLook Data
by Munashe Mashabatu, Nonofo Motsei, Nebojsa Jovanovic and Luxon Nhamo
Water 2025, 17(3), 300; https://doi.org/10.3390/w17030300 - 22 Jan 2025
Viewed by 883
Abstract
South Africa is considered one of the driest countries, and its water insecurity challenges are exacerbated by climate change and variability, depletion, and degradation, among other factors. The challenges of water insecurity are exacerbated by some of the introduced crops, like the Japanese [...] Read more.
South Africa is considered one of the driest countries, and its water insecurity challenges are exacerbated by climate change and variability, depletion, and degradation, among other factors. The challenges of water insecurity are exacerbated by some of the introduced crops, like the Japanese plums (Prunus salicina Lindl.) grown in South Africa, as they consume a lot of water. The Japanese plums are grown under irrigation to supplement low and erratic rainfall in the country. There is little information on the water requirements of Japanese plums (particularly in water-scarce regions), a gap addressed by this study. Therefore, the study aims to quantify and compare the seasonal water use of high-performing, full-bearing Japanese plum orchards under drip and micro-sprinkler irrigation in the Western Cape Province, using readily available satellite data from the FruitLook platform. The seasonal water use volumes of selected plum orchards were compared at provincial and farm scales. At a provincial scale, micro-sprinkler-irrigated orchards consumed significantly more water (up to 19%) than drip-irrigated orchards, whilst drip-irrigated orchards experienced an average 38% greater water deficit. Results were more variable at the farm scale, which was attributed to the influence of site-specific soil, climate, and crop conditions on the performance of the irrigation methods. Therefore, a blanket approach cannot be used when selecting an irrigation method and design. Instead, a case-by-case approach is recommended, which takes into account the root distribution, soil texture, and planting density, among other factors. The generated knowledge facilitates allocating and licensing water resources, developing accurate irrigation scheduling, and promoting improved water use efficiency. Full article
(This article belongs to the Special Issue Crop Evapotranspiration, Crop Irrigation and Water Savings)
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13 pages, 1409 KiB  
Article
Chemical Characterization of Pruning Wood Extracts from Six Japanese Plum (Prunus salicina Lindl.) Cultivars and Their Antitumor Activity
by Juan Ortega-Vidal, Nuria Mut-Salud, José M. de la Torre, Joaquín Altarejos and Sofía Salido
Molecules 2024, 29(16), 3887; https://doi.org/10.3390/molecules29163887 - 16 Aug 2024
Viewed by 1206
Abstract
The Japanese plum tree (Prunus salicina Lindl.) is mainly cultivated in temperate areas of China and some European countries. Certain amounts of wood (from pruning works) are generated every year from this crop of worldwide commercial significance. The main objective of this [...] Read more.
The Japanese plum tree (Prunus salicina Lindl.) is mainly cultivated in temperate areas of China and some European countries. Certain amounts of wood (from pruning works) are generated every year from this crop of worldwide commercial significance. The main objective of this work was to value this agricultural woody residue, for which the chemical composition of pruning wood extracts from six Japanese plum cultivars was investigated, and the antiproliferative activity of extracts and pure phenolics present in those extracts was measured. For the chemical characterization, total phenolic content and DPPH radical-scavenging assays and HPLC‒DAD/ESI‒MS analyses were performed, with the procyanidin (−)-ent-epicatechin-(2α→O→7,4α→8)-epicatechin (5) and the propelargonidin (+)-epiafzelechin-(2β→O→7,4β→8)-epicatechin (7) being the major components of the wood extracts. Some quantitative differences were found among plum cultivars, and the content of proanthocyanidins ranged from 1.50 (cv. ‘Fortune’) to 4.44 (cv. ‘Showtime’) mg/g of dry wood. Regarding the antitumoral activity, eight wood extracts and four phenolic compounds were evaluated in MCF-7 cells after 48 h of induction, showing the wood extract from cv. ‘Songold’ and (‒)-annphenone (3), the best antiproliferative activity (IC50: 424 μg/mL and 405 μg/mL, respectively). Full article
(This article belongs to the Special Issue Effect of Natural Products in the Cancer Therapy Mechanism)
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19 pages, 3727 KiB  
Review
Assessing the Seasonal Water Requirement of Fully Mature Japanese Plum Orchards: A Systematic Review
by Munashe Mashabatu, Nonofo Motsei, Nebojša Jovanović, Timothy Dube, Ubaidullah Mathews and Yolanda Nqumkana
Appl. Sci. 2024, 14(10), 4097; https://doi.org/10.3390/app14104097 - 11 May 2024
Cited by 5 | Viewed by 1851
Abstract
Japanese plums have relatively high water requirements, which depend on supplementing rainfall volumes with accurately quantified irrigation water. There is a lack of knowledge on the seasonal water requirements of plum orchards. This gap in the literature poses an imminent threat to the [...] Read more.
Japanese plums have relatively high water requirements, which depend on supplementing rainfall volumes with accurately quantified irrigation water. There is a lack of knowledge on the seasonal water requirements of plum orchards. This gap in the literature poses an imminent threat to the long-term sustainability of the South African plum industry, which is particularly plagued by climate change and diminishing water resources. The systematic literature review conducted in this study aimed to provide a foundation for supporting water management in irrigated Japanese plum [Prunus salicina Lindl.] orchards. Seventeen peer-reviewed articles obtained from the literature were analyzed. Approximately 66% of the cultivars were cultivated under different regulated deficit irrigation regimes for water-saving purposes and to increase fruit quality. This review of our knowledge provided benchmark figures on the annual water requirements of Japanese plums. The full-year plum crop water requirements obtained from the literature ranged between 921 and 1211 mm a−1. Canopy growth, pruning and growing season length were the most common causes of differences in the water requirement estimates. Further research is required to measure the water requirement of plums from planting to full-bearing age and the response of plum trees to water stress, especially in the South African context. Full article
(This article belongs to the Section Agricultural Science and Technology)
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15 pages, 3937 KiB  
Article
Salicylic and Jasmonic Acid Synergism during Black Knot Disease Progression in Plums
by Ranjeet Shinde, Murali-Mohan Ayyanath, Mukund Shukla, Walid El Kayal, Praveen Kumar Saxena and Jayasankar Subramanian
Plants 2024, 13(2), 292; https://doi.org/10.3390/plants13020292 - 18 Jan 2024
Cited by 4 | Viewed by 1737
Abstract
Black knot (BK) is a deadly disease of European (Prunus domestica) and Japanese (Prunus salicina) plums caused by the hemibiotrophic fungus Apiosporina morbosa. Generally, phytopathogens hamper the balance of primary defense phytohormones, such as salicylic acid (SA)–jasmonic acid (JA) [...] Read more.
Black knot (BK) is a deadly disease of European (Prunus domestica) and Japanese (Prunus salicina) plums caused by the hemibiotrophic fungus Apiosporina morbosa. Generally, phytopathogens hamper the balance of primary defense phytohormones, such as salicylic acid (SA)–jasmonic acid (JA) balance, for disease progression. Thus, we quantified the important phytohormone titers in tissues of susceptible and resistant genotypes belonging to European and Japanese plums at five different time points. Our previous results suggested that auxin-cytokinins interplay driven by A. morbosa appeared to be vital in disease progression by hampering the plant defense system. Here, we further show that such hampering of disease progression is likely mediated by perturbance in SA, JA, and, to some extent, gibberellic acid. The results further indicate that SA and JA in plant defense are not always necessarily antagonistic as most of the studies suggest but can be different, especially in woody perennials. Together, our results suggest that the changes in phytohormone levels, especially in terms of SA and JA content due to BK infection and progression in plums, could be used as phytohormonal markers in the identification of BK-resistant cultivars. Full article
(This article belongs to the Special Issue Genetics of Disease Resistance in Horticultural Crops)
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48 pages, 584 KiB  
Review
Edible Oils from Selected Unconventional Sources—A Comprehensive Review of Fatty Acid Composition and Phytochemicals Content
by Iwona Konopka, Małgorzata Tańska, Grzegorz Dąbrowski, Dorota Ogrodowska and Sylwester Czaplicki
Appl. Sci. 2023, 13(23), 12829; https://doi.org/10.3390/app132312829 - 29 Nov 2023
Cited by 8 | Viewed by 2746
Abstract
In recent years, there was an increase in the commercial offer of vegetable oils from unconventional sources, such as fruit, vegetable, and herb seeds. The paper presents a synthesis of available scientific information on 27 oils obtained from the seeds of 14 fruit [...] Read more.
In recent years, there was an increase in the commercial offer of vegetable oils from unconventional sources, such as fruit, vegetable, and herb seeds. The paper presents a synthesis of available scientific information on 27 oils obtained from the seeds of 14 fruit species (apple, apricot, chokeberry, black berry, blackcurrant, blue berry, cherry, Japanese quince, pear, plum, quince, raspberry, rosehip, and strawberry), 8 vegetable species (broccoli, cabbage, carrot, cucumber, onion, parsley, radish, and tomato), and 5 herb species (basil, coriander, fennel, fenugreek, and perilla). A review of the literature showed that oil content in these seeds ranges from ca. 5% for fenugreek to over 55% for apricot kernels. A recommended n-6/n-3 fatty acid ratio below 4-5/1 was noted in 11 species. Japanese quince, blackcurrant, and fenugreek seed oils seem to be good sources of phytosterols. Radish seed oil was mostly abundant in tocols, Japanese quince seed oil in squalene, and blackcurrant seed oil in carotenoids. Unfortunately, actual data on the composition of these seed oils are highly variable, making it difficult to precisely identify the most nutritionally valuable oils. Full article
14 pages, 2548 KiB  
Article
Hormonal Interplay Leading to Black Knot Disease Establishment and Progression in Plums
by Ranjeet Shinde, Murali-Mohan Ayyanath, Mukund Shukla, Walid El Kayal, Praveen Saxena and Jayasankar Subramanian
Plants 2023, 12(20), 3638; https://doi.org/10.3390/plants12203638 - 21 Oct 2023
Cited by 5 | Viewed by 1778
Abstract
Black Knot (BK) is a deadly disease of European (Prunus domestics) and Japanese (Prunus salicina) plums caused by the hemibiotrophic fungus Apiosporina morbosa. After infection, the appearance of warty black knots indicates a phytohormonal imbalance in infected tissues. [...] Read more.
Black Knot (BK) is a deadly disease of European (Prunus domestics) and Japanese (Prunus salicina) plums caused by the hemibiotrophic fungus Apiosporina morbosa. After infection, the appearance of warty black knots indicates a phytohormonal imbalance in infected tissues. Based on this hypothesis, we quantified phytohormones such as indole-3-acetic acid, tryptophan, indoleamines (N-acetylserotonin, serotonin, and melatonin), and cytokinins (zeatin, 6-benzyladenine, and 2-isopentenyladenine) in temporally collected tissues of susceptible and resistant genotypes belonging to European and Japanese plums during of BK progression. The results suggested auxin-cytokinins interplay driven by A. morbosa appears to be vital in disease progression by hampering the plant defense system. Taken together, our results indicate the possibility of using the phytohormone profile as a biomarker for BK resistance in plums. Full article
(This article belongs to the Special Issue Advances in Plant-Fungal Pathogen Interaction)
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13 pages, 2025 KiB  
Article
Optimal Preharvest Melatonin Applications to Enhance Endogenous Melatonin Content, Harvest and Postharvest Quality of Japanese Plum
by Daniel Cortés-Montaña, María Josefa Bernalte-García, Manuel Joaquín Serradilla and Belén Velardo-Micharet
Agriculture 2023, 13(7), 1318; https://doi.org/10.3390/agriculture13071318 - 28 Jun 2023
Cited by 11 | Viewed by 2757
Abstract
Plum is one of the most produced stone fruits worldwide. Melatonin is an environmentally eco-friendly substance that, in low concentrations, activates defence systems against biotic and abiotic stresses. This substance is considered a tool that could increase fruit quality. This study aimed to [...] Read more.
Plum is one of the most produced stone fruits worldwide. Melatonin is an environmentally eco-friendly substance that, in low concentrations, activates defence systems against biotic and abiotic stresses. This substance is considered a tool that could increase fruit quality. This study aimed to evaluate the impact of different preharvest foliar applications with different melatonin concentrations (0.1, 0.3, 0.5 mmol L−1) to enhance melatonin content and shelf life of ‘Primetime’ plum. To this purpose, two and three applications were carried out at different critical stages of fruit growth. Different quality characteristics such as size, colour, titratable acidity, total soluble solids, ripening index, respiration rate, ethylene production rate, anthocyanins and total antioxidant activity, as well as endogenous melatonin content, were tested at harvest and after 40 days of cold storage. Results showed that ‘Primetime’ plums that received 3 applications of 0.5 mmol L−1 enhanced endogenous melatonin content at harvest and showed less softening, delayed darkening, higher anthocyanin concentration and total antioxidant activity after 40 days of storage. Therefore, the concentration of 0.5 mmol L−1 melatonin in 3 applications was effective in improving the quality of ‘Primetime’ plums. Full article
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15 pages, 3060 KiB  
Article
Modelling Soil Water Redistribution in Irrigated Japanese Plum (Prunus salicina) Orchards in the Western Cape (South Africa)
by Nebojša Jovanović, Nonofo Motsei, Munashe Mashabatu and Timothy Dube
Horticulturae 2023, 9(3), 395; https://doi.org/10.3390/horticulturae9030395 - 18 Mar 2023
Cited by 5 | Viewed by 2184
Abstract
Japanese plum (Prunus salicina) farming in the Western Cape (South Africa) is an important industry for the export market and job creation and is a large water user; however, adequate information on water requirements of this crop is not available in [...] Read more.
Japanese plum (Prunus salicina) farming in the Western Cape (South Africa) is an important industry for the export market and job creation and is a large water user; however, adequate information on water requirements of this crop is not available in this semi-arid area. The objective of this study was to determine seasonal plum water requirements for the purpose of water use planning and allocation. The study made use of experimental data from four fully bearing, high-yielding plum orchards (cv African Delight and Fortune) in two major plum production regions (Robertson and Wellington). Crop water requirements and the soil water balance were modelled with the physically based HYDRUS-2D model. Seasonal crop water requirements were estimated to be between 524 mm (cv Fortune in Wellington) and 864 mm (cv African Delight in Robertson). Initial basal crop coefficients (Kcb) ranged between 0.98 and 1.01, whilst Kcb for the mid-stage averaged between 1.11 (cv African Delight in Robertson) and 1.18 (cv Fortune in Wellington). Modelling scenarios indicated that soil water redistribution beyond the root zone continues at reduced rates after the soil dries to levels below field capacity. Irrigation management needs to be balanced with other farming practices to reduce leaching and impacts on water resource quality, as well as with the economics of the farm. Full article
(This article belongs to the Special Issue Integrated Water Resources Management for Horticulture)
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14 pages, 1353 KiB  
Article
Evaluation of Nursery Traits in Japanese Plums on Five Different Rootstocks
by Tomáš Nečas, Jan Wolf, Eliška Zezulová and Ivo Ondrášek
Horticulturae 2023, 9(3), 318; https://doi.org/10.3390/horticulturae9030318 - 28 Feb 2023
Cited by 3 | Viewed by 2583
Abstract
Climate change has a negative effect on the environment in which traditional fruit species are grown and, at the same time, offers the potential for cultivation of new species. Japanese plums derived from P. salicina Lindley are a fruit species that is slowly [...] Read more.
Climate change has a negative effect on the environment in which traditional fruit species are grown and, at the same time, offers the potential for cultivation of new species. Japanese plums derived from P. salicina Lindley are a fruit species that is slowly being introduced to the Czech Republic. Therefore, there are efforts to find ways to grow these varieties. In our experiment, selected nursery traits that are important for the production of Japanese plum saplings in the region of the Czech Republic were evaluated. The main evaluation criteria were scion affinity, sapling yield, and selected growth characteristics. The results show that the best affinity was achieved with the Adesoto (92.0%) and the Torinel (90.0%) rootstocks. Moderate levels of affinity were found for Brompton (84.2%) and St. Julien A (80.0%) rootstocks. Weak affinity was found only for the rootstock Wavit (52.7%). The economically significant trait is the yield of saplings; here, the highest yields were obtained with the Adesoto rootstock (88.4%) and the Japanese plum variety ‘Black Star’ (89.3%). Generally, the Adesoto and Torinel rootstocks proved to be the most suitable for use with Japanese plum varieties. Full article
(This article belongs to the Section Fruit Production Systems)
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18 pages, 1622 KiB  
Article
S-Locus Genotyping in Japanese Plum by High Throughput Sequencing Using a Synthetic S-Loci Reference Sequence
by Afif Hedhly, María Engracia Guerra, Jerome Grimplet and Javier Rodrigo
Int. J. Mol. Sci. 2023, 24(4), 3932; https://doi.org/10.3390/ijms24043932 - 15 Feb 2023
Cited by 2 | Viewed by 2383
Abstract
Self-incompatibility in Prunus species is governed by a single locus consisting of two highly multi-allelic and tightly linked genes, one coding for an F-box protein—i.e., SFB in Prunus- controlling the pollen specificity and one coding for an S-RNase gene controlling the pistil [...] Read more.
Self-incompatibility in Prunus species is governed by a single locus consisting of two highly multi-allelic and tightly linked genes, one coding for an F-box protein—i.e., SFB in Prunus- controlling the pollen specificity and one coding for an S-RNase gene controlling the pistil specificity. Genotyping the allelic combination in a fruit tree species is an essential procedure both for cross-based breeding and for establishing pollination requirements. Gel-based PCR techniques using primer pairs designed from conserved regions and spanning polymorphic intronic regions are traditionally used for this task. However, with the great advance of massive sequencing techniques and the lowering of sequencing costs, new genotyping-by-sequencing procedures are emerging. The alignment of resequenced individuals to reference genomes, commonly used for polymorphism detection, yields little or no coverage in the S-locus region due to high polymorphism between different alleles within the same species, and cannot be used for this purpose. Using the available sequences of Japanese plum S-loci concatenated in a rosary-like structure as synthetic reference sequence, we describe a procedure to accurately genotype resequenced individuals that allowed the analysis of the S-genotype in 88 Japanese plum cultivars, 74 of them are reported for the first time. In addition to unraveling two new S-alleles from published reference genomes, we identified at least two S-alleles in 74 cultivars. According to their S-allele composition, they were assigned to 22 incompatibility groups, including nine new incompatibility groups reported here for the first time (XXVII-XXXV). Full article
(This article belongs to the Special Issue Advances in Research for Fruit Crop Breeding and Genetics)
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