Search Results (19)

Pinus albicaulis (whitebark pine) is a keystone species, providing food and habitat to wildlife, in high-elevation ecological communities. In recent years, this important species has been negatively impacted by changes in fire regimes, increased Dendroctonus ponderosae (mountain pine beetle) outbreaks associated with human landscape and climate modification, and the continued impact of the non-native Cronartium ribicola (white pine blister rust). This research investigates changes in fire occurrence, the establishment of Pinus albicaulis, and fuel availability at a high-elevation site in the Sawtooth National Recreation Area, Idaho, USA. Charcoal and pollen analyses were used to reconstruct fire and vegetation patterns for Phyllis Lake, Idaho, USA, over the past ~8200 cal y BP. We found that significant fire episodes occurred when the pollen accumulation rates (PARs) indicated more arboreal fuel availability, and we identified that Pinus albicaulis became well established at the site ~7200 cal y BP. The high-elevation nature of Phyllis Lake (2800 m) makes this record unique, as there are not many paleorecords at this high elevation from the Northern Rocky Mountains, USA. Additional high-elevation sites in Pinus albicaulis habitats will provide critical insight into the long-term dynamics of this threatened species. Full article

Pathogen perception generates the activation of signal transduction cascades to host defense. White pine blister rust (WPBR) is caused by Cronartium ribicola J.C. Fisch and affects a number of species of Pinus. One of the most severely affected species is Pinus albicaulis Engelm (whitebark pine). WPBR resistance in the species is a polygenic and complex trait that requires an optimized immune response. We identified early responses in 2-year-old seedlings after four days of fungal inoculation and compared the underlying transcriptomic response with that of healthy non-inoculated individuals. A de novo transcriptome assembly was constructed with 56,796 high quality-annotations derived from the needles of susceptible and resistant individuals in a resistant half-sib family. Differential expression analysis identified 599 differentially expressed transcripts, from which 375 were upregulated and 224 were downregulated in the inoculated seedlings. These included components of the initial phase of active responses to abiotic factors and stress regulators, such as those involved in the first steps of flavonoid biosynthesis. Four days after the inoculation, infected individuals showed an overexpression of chitinases, reactive oxygen species (ROS) regulation signaling, and flavonoid intermediates. Our research sheds light on the first stage of infection and emergence of disease symptoms among whitebark pine seedlings. RNA sequencing (RNA-seq) data encoding hypersensitive response, cell wall modification, oxidative regulation signaling, programmed cell death, and plant innate immunity were differentially expressed during the defense response against C. ribicola. Full article

Plant endosymbionts (endophytes) influence host plant health and express genotype-dependent ecological relationships with plant hosts. A fungal species intended to confer host plant resistance to a forest pathogen was used as inoculum to test for effects of inoculation on disease resistance, microbiomes, and phytochemistry of a threatened pine species planted in a restoration setting. Correlations of inoculation presence/absence, phytochemistry, spatial location of seedlings, maternal seed sources, and fungal endophytic communities in the foliage of six-year-old whitebark pine (Pinus albicaulis) seedlings were assessed five years after an experimental inoculation of seedlings with foliar endophytic fungi cultured from whitebark pine trees at Crater Lake National Park, including Paramyrothecium roridum. We hypothesized that P. roridum would modify host microbiomes in a manner that combats white pine blister rust disease. Our assessment of seedlings in the field five years after inoculation allowed us to consider whether inoculation stimulated long-lasting changes in microbiome communities and whether effects varied by seedling genetic family. Tests for effects of endophyte inoculation on disease resistance were inconclusive due to current low levels of rust infection observed at the field site. Foliar fungal endophyte richness and Shannon diversity varied with maternal seed sources. Isotopic stoichiometry and phytochemistry did not vary with seedling spatial proximity, inoculation treatment, or maternal seed family. However, endophyte community composition varied with both seedling spatial proximity and maternal seed sources. Endophytic communities did not vary with the inoculation treatment, and the hypothesized biocontrol was not detected in inoculated seedlings. We draw three conclusions from this work: (1) fungal microbiomes of whitebark pine seedlings across our study site did not vary with host phytochemical signatures of ecophysiological status, (2) the inoculation of P. albicaulis seedlings with a mixture of fungal endophytes did not lead to persistent systemic changes in seedling foliar microbiomes, and (3) in correspondence with other studies, our data suggest that maternal seed source and spatial patterns influence fungal endophyte community composition. Full article

Finding trees that are resistant to pathogens is key in preparing for current and future disease threats such as the invasive white pine blister rust. In this study, we analyzed the potential of using hyperspectral imaging to find and diagnose the degree of infection of the non-native white pine blister rust in southwestern white pine seedlings from different seed-source families. A support vector machine was able to automatically detect infection with a classification accuracy of 87% (κ = 0.75) over 16 image collection dates. Hyperspectral imaging only missed 4% of infected seedlings that were impacted in terms of vigor according to expert’s assessments. Classification accuracy per family was highly correlated with mortality rate within a family. Moreover, classifying seedlings into a ‘growth vigor’ grouping used to identify the degree of impact of the disease was possible with 79.7% (κ = 0.69) accuracy. We ranked hyperspectral features for their importance in both classification tasks using the following features: 84 vegetation indices, simple ratios, normalized difference indices, and first derivatives. The most informative features were identified using a ‘new search algorithm’ that combines both the p-value of a 2-sample t-test and the Bhattacharyya distance. We ranked the normalized photochemical reflectance index (PRIn) first for infection detection. This index also had the highest classification accuracy (83.6%). Indices such as PRIn use only a small subset of the reflectance bands. This could be used for future developments of less expensive and more data-parsimonious multispectral cameras. Full article

Research Highlights: Limber pine (Pinus flexilis) is abundant in some alpine treeline ecotone (ATE) communities east of the Continental Divide in Rocky Mountain National Park (RMNP) and the Colorado Front Range. Limber pine may be able to colonize the ATE under changing climate aided by directed seed dispersal by Clark’s nutcrackers (Nucifraga columbiana). Cronartium ribicola, white pine blister rust, is a growing threat to limber pine and may affect its functional role within the ATE. Background and Objectives: The ATE is sensitive, worldwide, to increasing temperature. However, the predicted advance of treeline under a changing climate may be modified by tree species composition and interactions. We aimed to (1) examine the conifer species composition and relative abundances in treeline communities with limber pine; (2) assess which functional roles limber pine assumes in these communities—tree island initiator, tree island component, and/or solitary tree; and (3) determine whether limber pine’s occurrence as a tree island initiator can be predicted by its relative abundance as a solitary tree. Materials and Methods: We selected four study sites in RMNP above subalpine forest limber pine stands. We sampled the nearest tree island to each of forty random points in each study site as well as solitary tree plots. Results: Across study sites, limber pine comprised, on average, 76% of solitary trees and was significantly more abundant as a solitary tree than Engelmann spruce (Picea engelmannii) or subalpine fir (Abies lasiocarpa). Limber pine was a frequent component of multi-tree islands in three study sites, the major component in one study site, and dominated single-tree islands at two study sites. At three of four study sites, no species had significantly greater odds of being a tree island initiator. Limber pine was found less often as a tree island initiator than predicted from its relative abundance as a solitary tree, given the likely role of solitary trees in tree island formation. Full article

Whitebark pine (Pinus albicaulis. Engelm.) is vulnerable to a number of threats including an introduced pathogen (Cronartium ribicola J.C. Fisch.), epidemic levels of native mountain pine beetle (Dendroctonus ponderosae Hopkins), fire suppression, and climate change. To describe the structure of whitebark pine populations in two national parks in the southern Cascades (Crater Lake, Oregon, USA (CRLA) and Lassen Volcanic, California, USA (LAVO) National Parks), we surveyed trees in 30 × 50 × 50 m plots in both parks. We used these plots to describe the extent of white pine blister rust (the disease caused by Cronartium ribicola), mountain pine beetle occurrence, and to elucidate factors influencing the presence of pests and pathogens, cone production, and canopy kill. In each plot, we recorded data related to tree health, including symptoms of blister rust and mountain pine beetle, and reproductive vigor (cone production). In both parks, encroachment from other species, particularly mountain hemlock (Tsuga mertensiana (Bong.) Carrière), was negatively associated with cone production. In CRLA, water stress was a good predictor of blister rust infection and cone production. For CRLA and LAVO, the presence of mountain pine beetle and blister rust was associated with higher canopy kill for whitebark pine. Lastly, we found evidence for a pest-pathogen interaction, mountain pine beetle attack was greater for trees that showed symptoms of blister rust infection in CRLA. Our results indicate that whitebark pine populations in the southern Cascade Range are experiencing moderate levels of blister rust infection compared with other sites across the species range, and that competition from shade-tolerant species may result in an additional threat to whitebark pine in both parks. We present our findings in the context of park management and situate them in range-wide and regional conservation strategies aimed at the protection and restoration of a declining species. Full article

Whitebark pine, a foundation species at tree line in the Western U.S. and Canada, has declined due to native mountain pine beetle epidemics, wildfire, and white pine blister rust. These declines are concerning for the multitude of ecosystem and human benefits provided by this species. An understanding of the climatic correlates associated with spread is needed to successfully manage impacts from forest pathogens. Since 2000 mountain pine beetles have killed 75% of the mature cone-bearing trees in the Greater Yellowstone Ecosystem, and 40.9% of monitored trees have been infected with white pine blister rust. We identified models of white pine blister rust infection which indicated that an August and September interaction between relative humidity and temperature are better predictors of white pine blister rust infection in whitebark pine than location and site characteristics in the Greater Yellowstone Ecosystem. The climate conditions conducive to white pine blister rust occur throughout the ecosystem, but larger trees in relatively warm and humid conditions were more likely to be infected between 2000 and 2018. We mapped the infection probability over the past two decades to identify coarse-scale patterns of climate conditions associated with white pine blister rust infection in whitebark pine. Full article

Research Highlights: When biotic interactions such as disease alter both the seed production capacity of stands, and seedling survivorship, the relative importance of seed availability versus substrate specificity may alter future regeneration opportunities for plant populations. Background and Objectives: We investigated the importance of disease severity, seed availability, and substrate limitation to the regeneration dynamics of the endangered limber pine, Pinus flexilis, in two ecosystems with varying forest composition, and different histories of white pine blister rust infection (WPBR; Cronartium ribicola). Materials and Methods: A total of 17 stands from the montane ecoregion (Alberta, Canada) were sampled for seed production between 2007–2010, seedling density, and age structure. Model selection using an information theoretic approach compared a series of a priori models and their combinations, based on our hypotheses on the role biotic variables play in the regeneration process. Results: Despite higher rates of WPBR infection, 2.3 times more seed was available for avian dispersers in the southern ecosystem. Recent seedling regeneration did not correspond to seed production (83 versus 251 seedlings/ha, in southern versus northern ecosystems, respectively), resulting in a seven-fold difference in seed to seedling ratios between ecosystems. Models suggest that disease and vegetation cover were important factors explaining the absence of regeneration in 79.4% of the plots sampled, while basal area (BA) of live limber pine, rocky substrates, ecosystem, South aspects, and slope enhanced limber pine regeneration. Seedling age structures suggest that recent regeneration is less likely in more diseased landscapes, than it was historically (40% versus 72.8% of seedlings < 20 years old, respectively, in southern versus northern ecosystems). Conclusions: At the northern limits of limber pine’s range, seed availability does not ensure regeneration, suggesting that other environmental or biotic factors hinder regeneration. Regeneration was consistently predicted to be lower in the southern ecosystem than in the northern ecosystem, suggesting that natural regeneration and the potential for population recovery are ecosystem dependent. We recommend that monitoring recent seedlings will aid the identification of biotic and abiotic factors affecting regeneration. Full article

The Inventory & Monitoring Division of the U.S. National Park Service conducts long-term monitoring to provide park managers information on the status and trends in biological and environmental attributes including white pines. White pines are foundational species in many subalpine ecosystems and are currently experiencing population declines. Here we present results on the status of whitebark and foxtail pine in the southern Sierra Nevada of California, an area understudied relative to other parts of their ranges. We selected random plot locations in Yosemite, Sequoia, and Kings Canyon national parks using an equal probability spatially-balanced approach. Tree- and plot-level data were collected on forest structure, composition, demography, cone production, crown mortality, and incidence of white pine blister rust and mountain pine beetle. We measured 7899 whitebark pine, 1112 foxtail pine, and 6085 other trees from 2012–2017. All factors for both species were spatially highly variable. Whitebark pine occurred in nearly-pure krummholz stands at or near treeline and as a minor component of mixed species forests. Ovulate cones were observed on 25% of whitebark pine and 69% of foxtail pine. Whitebark pine seedlings were recorded in 58% of plots, and foxtail pine seedlings in only 21% of plots. Crown mortality (8% in whitebark, 6% in foxtail) was low and significantly higher in 2017 compared to previous years. Less than 1% of whitebark and zero foxtail pine were infected with white pine blister rust and <1% of whitebark and foxtail pine displayed symptoms of mountain pine beetle attack. High elevation white pines in the southern Sierra Nevada are healthy compared to other portions of their range where population declines are significant and well documented. However, increasing white pine blister rust and mountain pine beetle occurrence, coupled with climate change projections, portend future declines for these species, underscoring the need for broad-scale collaborative monitoring. Full article

In the northern Rocky Mountains of the U.S. and Canada, whitebark pine (Pinus albicaulis Engelm.) is a functionally important species in treeline communities. The introduced fungal pathogen Cronartium ribicola, which causes white pine blister rust, has led to extensive whitebark pine mortality nearly rangewide. We examined four treeline communities within the Greater Yellowstone Ecosystem (GYE) to assess structure and composition, whitebark pine prevalence and functional role, differences in growing season mesoclimate among study areas, and blister rust infection incidence. We found that (1) whitebark pine frequently serves as the majority overall, solitary, and leeward tree island conifer; (2) the prevalence of different tree species in the windward position in tree islands, and thus their potential as tree island initiators, may be predicted from their relative abundance as solitary trees; and (3) white pine blister rust infection incidence ranged from 0.6% to 18.0% across study areas. White pine blister rust poses a threat to treeline development and structure and the provision of ecosystem services in the GYE. Increasing blister rust resistance in nearby subalpine whitebark pine communities through seedling planting or direct seeding projects should eventually result in higher levels of blister rust resistance in whitebark pine in treeline communities. Full article

Limber pine (Pinus flexilis James) co-evolved with the mountain pine beetle (Dendroctonus ponderosae Hopkins; MPB) and is now also challenged by the non-native pathogen Cronartium ribicola (J.C. Fisch.) that causes the lethal disease white pine blister rust (WPBR). Previous research suggests that trees infected with WPBR can be preferred hosts for MPB. Using resin duct traits associated with MPB resistance, we tested for a relationship between resistance to MPB and WPBR in limber pine, in the absence of either biological agent. These analyses will help evaluate if MPB historically may have contributed to natural selection for WPBR resistance in advance of WPBR invasion, and could help explain the unusually high frequency of the dominant Cr4 allele for complete resistance to WPBR in limber pine populations of the Southern Rocky Mountains. Resin duct production, density and relative duct area did not differ between healthy trees previously inferred to carry the dominant Cr4 allele and trees that lack it at 22 sites, though some duct traits varied with elevation. MPB resistance does not appear to have played an evolutionary role in contributing to the high frequency of Cr4 in naïve populations, however, MPB may affect the future evolution of resistance to WPBR in the pines where the two pests coincide and WPBR will affect forest recovery after MPB epidemics. MPB-WPBR interactions in a changing climate will affect the future trajectory of limber pine. Full article

Whitebark pine (Pinus albicaulis Engelm.), an ecologically important tree species in high-elevation ecosystems of western North America, is threatened by white pine blister rust (Cronartium ribicola Fischer) and increased pressure from mountain pine beetle (Dendroctonus ponderosae Hopkins) due to climate warming. In addition, there is concern that fire suppression may be leading to successional replacement of whitebark by late-seral trees. Despite widespread knowledge that the tree is in decline, there is limited understanding of its successional dynamics, particularly in forests disturbed by white pine blister rust and mountain pine beetle. Our objective was to examine how disturbances have affected forest composition, structure, and seedling regeneration over a 22-year period (1990–2012) at 19 sites in the Cascade Mountains of Washington State (USA). Over that time, 13 sites (68%) were infected by white pine blister rust, 11 (58%) were disturbed by mountain pine beetle, and 5 (26%) experienced wildfire. Tree community composition changed significantly during the study period, primarily due to significant mortality of mature (≥20-cm diameter at breast height) whitebark pine. Despite loss of mature whitebark trees, we found little evidence of successional replacement by other tree species. Whitebark seedling density was unrelated to basal area of mature whitebark pine, but positively correlated with the presence of herb and shrub cover. Our results demonstrate the value of long-term repeated measurements for elucidating successional dynamics. Full article

Whitebark pine (Pinus albicaulis Engelm.) forests play a prominent role throughout high-elevation ecosystems in the northern Rocky Mountains, however, they are vanishing from the high mountain landscape due to three factors: exotic white pine blister rust (Cronartium ribicola Fischer) invasions, mountain pine beetle (Dendroctonus ponderosae Hopkins) outbreaks, and successional replacement by more shade-tolerant tree species historically controlled by wildfire. Land managers are attempting to restore whitebark pine communities using prescribed fire and silvicultural cuttings, but they are unsure if these techniques are effective. The objective of this study was to determine how whitebark pine regeneration responds to selective thinning and prescribed burn treatments. We studied changes in diameter growth after restoration treatments using ring width measurements obtained from 93 trees at four sites in Montana and Idaho that were treated in the late 1990s. Overall, the average annual radial growth rates of the trees in treated areas were greater than those of trees in control areas. Specifically, there were significant increases in the growth ratio (180%) in the two sites that were both thinned and later burned. Younger regeneration showed more response to the treatments than older regeneration. All sites showed high variability in post-treatment growth rates across individual trees, with greater variability for trees in treated areas than in trees from the control areas. Results suggest that whitebark pine regeneration can respond to thin and burn release treatments and that managers may see positive results in areas that are treated similarly. Full article

Whitebark pine forests are declining due to infection by white pine blister rust and mountain pine beetle, combined with the effects of climate change and fire suppression. The Canadian Rocky and Columbia Mountains represent a large portion of the whitebark range; a vast area, exemplifying the need for knowledge about whitebark pine stands to target restoration. The aim of our work was to identify variables predicting live tree infection, seedling infection, canopy kill, mortality, and regeneration across this region, and present the results in spatially-explicit formats to assist land managers with restoration. Live tree and seedling infection by white pine blister rust increased over the last decade and cascading effects of the disease are intensifying, including canopy kill and mortality. We show that large diameter trees are more likely to be infected, and the highest infection rates are in southern and western areas. The conditions for seedling infection are more strongly influenced by fine-scale climatic conditions than for trees. Areas with low regeneration are: (1) the dry east slopes where live tree infection is low; and (2) where live tree infection rates are high, suggesting that canopy kill and mortality are influencing regeneration. Results highlight where to target restoration and coordinate across boundaries. Full article

Invasive, exotic insects and diseases have a devastating effect on North American forests. The rate of spread, or range expansion, is one of the main determinants of an invasive organism’s impact, and can play a major role in structuring management response options. To better understand how exotic organisms have spread through our forests, this study employs a consistent, rigorous analytical framework to analyze a comprehensive geospatial database for the spread of seven exotic insects and six diseases. This study includes new data for six insects and two diseases in combination with five invasive species previously analyzed using the same technique. The quantile regression analysis of over 3000 records of infestation over the preceding century show that the rate of spread of invasive forest insects and diseases ranges from 4.2 km·year⁻¹ to 57.0 km·year⁻¹. The slowest disease spread was white pine blister rust (Cronartium ribicola) at 7.4 km·year⁻¹ while the most rapid disease spread was chestnut blight (Cryphonectria parasitica) at 31.3 km·year⁻¹. The slowest insect spread was balsam woolly adelgid (Adelges piceae) (4.2 km·year⁻¹) while the fastest was emerald ash borer (Agrilus planipennis) at 57.0 km·year⁻¹. Species that can fly long distances or are vectored by flying insects have spread faster than those that are passively dispersed. This analysis highlights the difficulty of estimating spread rates from studies of individual dispersal or flight distances, but the estimated spread rates in this study are generally in line with previous estimates. Full article