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Keywords = C. nucifera

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18 pages, 3151 KB  
Article
Isolation and Identification of Bacteria Bacillus velezensis with Antagonistic Activity Against Major Pathogens of Coconut
by Hui Zhu, Sajid Mehmood and Xiaoqing Niu
Microorganisms 2025, 13(11), 2640; https://doi.org/10.3390/microorganisms13112640 - 20 Nov 2025
Viewed by 471
Abstract
Coconut (Cocos nucifera L.) cultivation is increasingly threatened by destructive fungal pathogens that reduce yield and compromise tree health, particularly in tropical regions in China. To address this challenge, the present study aimed to isolate and identify antagonistic bacteria with potential biocontrol [...] Read more.
Coconut (Cocos nucifera L.) cultivation is increasingly threatened by destructive fungal pathogens that reduce yield and compromise tree health, particularly in tropical regions in China. To address this challenge, the present study aimed to isolate and identify antagonistic bacteria with potential biocontrol activity against key pathogens of coconut, including Ceratocystis paradoxa (crown rot), Pestalotiopsis menezesiana (leaf blight), and Curvularia oryzae (leaf spot). A total of 65 bacterial strains were isolated from 58 soil samples collected from healthy coconut orchards. Among these, strain X1 exhibited the most vigorous antagonistic activity, with inhibition rates exceeding 70% against multiple pathogens in both plate confrontation and mycelial growth rate assays. Morphological, physiological, biochemical, and molecular (16S rDNA and gyrB gene sequencing) analyses confirmed the identity of strain X1 as Bacillus velezensis. Optimization of fermentation conditions for strain X1 revealed that maximum antimicrobial activity was achieved using a medium containing 2% glucose, 3% peptone, 0.3% NaH2PO4·2H2O, and 0.4% Na2HPO4·2H2O, at 28 °C and pH 7.0–7.5, 5% inoculum, 50–70 mL liquid volume in 250 mL flasks, 72 h fermentation, and agitation at 180–220 rpm. These findings highlight B. velezensis X1 as an up-and-coming biocontrol agent with dual functionalities: effective suppression of coconut fungal pathogens and potential plant growth promotion. Its application could significantly reduce the dependence on synthetic fungicides, offering an eco-friendly alternative for integrated disease management in coconut farming. Full article
(This article belongs to the Section Molecular Microbiology and Immunology)
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39 pages, 2371 KB  
Review
Plant-Derived Modifiers for Antimicrobial Soft Denture Liners: A Review
by Patrycja Kula, Grzegorz Chladek and Izabela Barszczewska-Rybarek
Int. J. Mol. Sci. 2025, 26(22), 10848; https://doi.org/10.3390/ijms262210848 - 8 Nov 2025
Viewed by 556
Abstract
This review examines strategies to enhance the antifungal properties of commercial soft lining materials (SLMs) through modification with plant-derived oils, extracts, and powders. These natural bioactive compounds act via multiple mechanisms, including disruption of fungal cell membranes, inhibition of biofilm formation, and interference [...] Read more.
This review examines strategies to enhance the antifungal properties of commercial soft lining materials (SLMs) through modification with plant-derived oils, extracts, and powders. These natural bioactive compounds act via multiple mechanisms, including disruption of fungal cell membranes, inhibition of biofilm formation, and interference with Candida albicans metabolism, the pathogen causing denture-associated candidiasis. Their incorporation into SLM provides localized antifungal activity at the denture–mucosa interface. The review highlights Aloe vera (aloe), Azadirachta indica (neem), Ocimum basilicum (basil), Melaleuca alternifolia (tea tree), Cocos nucifera (coconut), Allium sativum (garlic), Thymus vulgaris (thyme), and chitosan as notable sources of phytotherapeutics that consistently inhibit C. albicans growth. In addition to antimicrobial effects, studies assessed both intrinsic (hardness, tensile strength, tear strength) and interfacial (bond strength) mechanical properties, as well as surface roughness. Most formulations maintained acceptable mechanical performance and improved surface smoothness. Key limitations include rapid leaching of active compounds, variability in testing methods, and insufficient in vivo and cytotoxicity data. Future research should prioritize the high-quality purification of natural extracts, the isolation of well-defined bioactive compounds, and the design of systems enabling selective and sustained release of these agents, ensuring reproducibility, enhanced stability, and clinical reliability of next-generation bioactive SLMs. Full article
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19 pages, 6194 KB  
Article
Effect of Polylactic Acid (PLA) Blends on Cellulose Degradable Plastics from the Lotus Stem (Nelumbo nucifera)
by Rozanna Dewi, Novi Sylvia, Muhammad Subhan, Budhi Santri Kusuma, Aldila Ananda, Medyan Riza, Januar Parlaungan Siregar, Choon Kit Chan, Tezara Cionita and Elsherif Emad Ahmed Abdelrahman
Polymers 2025, 17(17), 2281; https://doi.org/10.3390/polym17172281 - 23 Aug 2025
Cited by 1 | Viewed by 1472
Abstract
Lotus stems contain cellulose, which can be utilized as a base material for producing green products, specifically degradable plastics. This research investigates the effect of polylactic acid (PLA) blends on cellulose degradable plastics from the lotus stem (Nelumbo nucifera). The mechanical [...] Read more.
Lotus stems contain cellulose, which can be utilized as a base material for producing green products, specifically degradable plastics. This research investigates the effect of polylactic acid (PLA) blends on cellulose degradable plastics from the lotus stem (Nelumbo nucifera). The mechanical characteristics are as follows: tensile strength of 0.7703–3.3212 MPa, elongation of 0.58–1.16%, Young’s modulus of 78.7894–364.6118 MPa. Compound analysis showed the presence of O-H, C-C, and C=O groups, and the presence of microbial activity in the soil can also lead to the degradation of these groups due to their hydrophilic nature, which allows them to bind water. Thermal analysis within a temperature range of 413.24 °C to 519.80 °C, shows that significant weight loss begins with the formation of crystalline structures. The degradable plastic exhibiting the lowest degree of swelling consists of 1 g of cellulose and 8 g of PLA, resulting in a swelling value of 6.25%. The degradable plastic is anticipated to decompose most rapidly after 52 days, utilizing 2 g of PLA and 7 g of cellulose. This complies with standard requirement, which sets a maximum degradation period of 180 days for polymers. Full article
(This article belongs to the Special Issue Advanced Cellulose Polymers and Derivatives)
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18 pages, 2897 KB  
Article
Influence of Biochar Organic Carbon Composition and Thermal Stability on Nitrate Retention and Tomato Yield on Soilless Biochar Amended Growth Media
by George K. Osei, Lucy W. Ngatia, Michael D. Abazinge, Alejandro Bolques, Charles Jagoe, Marcia A. Owens, Benjamin Mwashote and Riqiang Fu
Agriculture 2025, 15(8), 865; https://doi.org/10.3390/agriculture15080865 - 16 Apr 2025
Viewed by 1261
Abstract
The application of biochar to traditional soil and soilless growth media in agriculture has been reported to increase plant production. However, it remains unclear which biochar component drives this process or which biogeochemical process is attributed to better plant productivity. Therefore, this study [...] Read more.
The application of biochar to traditional soil and soilless growth media in agriculture has been reported to increase plant production. However, it remains unclear which biochar component drives this process or which biogeochemical process is attributed to better plant productivity. Therefore, this study aims to determine how biochar organic carbon (C) composition and thermal stability influence nitrogen availability and tomato production. Soilless growth media composed of a mixture of 60% and 40% coconut coir (CC) (Cocos nucifera L.) and fine pine bark (PB) (Pinus genus), respectively, was amended with 0, 1, 2, 3, 4, 6, 8, 10, and 12% biochar per dry weight. The amended media were used to grow Red Bounty tomatoes (Lycopersicum esculentum) for three months. After harvesting tomatoes and determining yield, organic C composition and C thermal stability of the biochar amended soilless growth media mixtures were determined using solid-state 13C nuclear magnetic resonance (13C NMR) and multi-elemental scanning thermal analysis (MESTA), respectively. Thermal stability data were used to determine the “R400 index”, and nitrate (NO3) concentration was determined using the water extractable method. Results showed that biochar-amended media significantly increased pH (p < 0.0001) and NO3 (p = 0.0386) compared to the no-char control. Biochar amended soilless media organic C composition was dominated by O-alkyl-C as a result of a higher fraction of soilless media; however, total C, carboxyl-C, phenolic-C, and aromatic-C increased with increasing biochar content and related negatively to R400, which decreased with increasing biochar content. Nitrate retention and tomato yield increased with increasing total C, carboxyl-C, phenolic-C, and aromatic-C and decreasing R400. This indicates that the stable form of C, carboxyl-C, phenolic-C, aromatic-C, and low R400 enhanced NO3 sorption, reducing leaching and enhancing its availability for tomato growth. Full article
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18 pages, 3262 KB  
Article
Nelumbo nucifera Petals Ameliorate Depressive-like Symptom and Cognitive Deficit in Unpredictable Chronic Mild Stress Mouse Model
by Juthamart Maneenet, Yutthana Chotritthirong, Ashraf M. Omar, Rattanathorn Choonong, Supawadee Daodee, Orawan Monthakantirat, Charinya Khamphukdee, Supaporn Pitiporn, Suresh Awale, Kinzo Matsumoto and Yaowared Chulikhit
Nutrients 2025, 17(1), 94; https://doi.org/10.3390/nu17010094 - 29 Dec 2024
Cited by 1 | Viewed by 2687
Abstract
Background Chronic stress exposure has been widely recognized as a significant contributor to numerous central nervous system (CNS) disorders, leading to debilitating behavioral changes such as anxiety, depression, and cognitive impairments. The prolonged activation of the hypothalamic–pituitary–adrenal (HPA) axis during chronic stress disrupts [...] Read more.
Background Chronic stress exposure has been widely recognized as a significant contributor to numerous central nervous system (CNS) disorders, leading to debilitating behavioral changes such as anxiety, depression, and cognitive impairments. The prolonged activation of the hypothalamic–pituitary–adrenal (HPA) axis during chronic stress disrupts the neuroendocrine balance and has detrimental effects on neuronal function and survival. Nelumbo nucifera (N. nucifera) Gaertn., commonly known as the lotus flower, is a traditional medicinal plant consumed for its purported benefits on mental and physical well-being. Despite its traditional use, limited scientific evidence supports these claims. Methods The present study explores the effects of N. nucifera, commonly known as the lotus flower, on cognitive performance and stress resilience in a mouse model subjected to unpredictable chronic mild stress (UCMS). Results Daily treatment significantly improved cognitive performance, alleviated depressive-like behaviors, and normalized hypothalamic–pituitary–adrenal (HPA) axis activity, as indicated by a 60.97% reduction in serum corticosterone. At the molecular level, N. nucifera petals also downregulated serum- and glucocorticoid-inducible kinase 1 (SGK1) mRNA expression while upregulating brain-derived neurotrophic factor (BDNF) mRNA expression and cyclic-adenosine monophosphate (cAMP) responsive element-binding protein (CREB) mRNA expression in the hippocampus and frontal cortex. These normalizations are critical, as chronic stress dysregulates HPA axis function, exacerbating behavioral changes. Furthermore, a phytochemical analysis resulted in the isolation of five major compounds, kaempferol (1), trifolin (2), kaempferol-3-neohesperidoside (3), icariside D2 (4), and β-sitosterol (5), each demonstrating significant monoamine oxidase (MAO) inhibitory activity. Conclusions These compelling findings suggest that N. nucifera petals not only alleviate stress-induced mood and cognitive deficits but also offer a promising avenue for modulating the HPA axis and promoting neuroprotection via essential neurotrophic factors and enzymatic pathways. We advocate for its potential as a complementary and alternative medicine for effective stress management. Future investigations should further explore its mechanisms of action and evaluate its clinical applicability in stress-related disorders. Full article
(This article belongs to the Section Nutrition and Public Health)
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25 pages, 11761 KB  
Article
Genome-Wide Analysis of CSL Family Genes Involved in Petiole Elongation, Floral Petalization, and Response to Salinity Stress in Nelumbo nucifera
by Jie Yang, Juan Wang, Dongmei Yang, Wennian Xia, Li Wang, Sha Wang, Hanqian Zhao, Longqing Chen and Huizhen Hu
Int. J. Mol. Sci. 2024, 25(23), 12531; https://doi.org/10.3390/ijms252312531 - 22 Nov 2024
Cited by 4 | Viewed by 1466
Abstract
Lotus (Nelumbo nucifera), a perennial aquatic plant, endures various environmental stresses. Its diverse ornamental traits make it an ideal model for studying multigene family functional differentiation and abiotic stress responses. The cellulose synthase-like (CSL) gene family includes multiple subfamilies [...] Read more.
Lotus (Nelumbo nucifera), a perennial aquatic plant, endures various environmental stresses. Its diverse ornamental traits make it an ideal model for studying multigene family functional differentiation and abiotic stress responses. The cellulose synthase-like (CSL) gene family includes multiple subfamilies and holds potentially pivotal roles in plant growth, development, and stress responses. Thus, understanding this family is essential for uncovering the attributes of ancient dicotyledonous lotus species and offering new genetic resources for targeted genetic improvement. Herein, we conducted a genome-wide NnCSL gene identification study, integrating tissue-specific expression analysis, RNA-seq, and qRT-PCR validation. We identified candidate NnCSL genes linked to petiole elongation, floral petalization, salinity stress responses, and potential co-expressed TFs. 22 NnCSL genes were categorized into six subfamilies: NnCSLA, NnCSLB, NnCSLC, NnCSLD, NnCSLE, and NnCSLG. Promoter regions contain numerous cis-acting elements related to growth, development, stress responses, and hormone regulation. Nineteen NnCSL genes showed specific differential expression in LPA (large plant architecture) versus SPA (small plant architecture): petioles, petalized carpels (CP) and normal carpels (C), and petalized stamens (SP) and normal stamens (S). Notably, most NnCSLC, NnCSLA, and NnCSLB subfamily genes play diverse roles in various aspects of lotus growth and development, while NnCSLE and NnCSLG are specifically involved in carpel petalization and petiole elongation, respectively. Additionally, 11 candidate NnCSL genes responsive to salinity stress were identified, generally exhibiting antagonistic effects on growth and developmental processes. These findings provide an important theoretical foundation and novel insights for the functional study of NnCSL genes in growth, development, and stress resistance in lotus. Full article
(This article belongs to the Special Issue Crop Stress Biology and Molecular Breeding: 4th Edition)
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20 pages, 26445 KB  
Article
Multi-Dimensional Modelling of Bioinspired Flow Channels Based on Plant Leaves for PEM Electrolyser
by Mohammad Alobeid, Selahattin Çelik, Hasan Ozcan and Bahman Amini Horri
Energies 2024, 17(17), 4411; https://doi.org/10.3390/en17174411 - 3 Sep 2024
Cited by 4 | Viewed by 2325
Abstract
The Polymer Electrolyte Membrane Water Electrolyser (PEMWE) has gained significant interest among various electrolysis methods due to its ability to produce highly purified, compressed hydrogen. The spatial configuration of bipolar plates and their flow channel patterns play a critical role in the efficiency [...] Read more.
The Polymer Electrolyte Membrane Water Electrolyser (PEMWE) has gained significant interest among various electrolysis methods due to its ability to produce highly purified, compressed hydrogen. The spatial configuration of bipolar plates and their flow channel patterns play a critical role in the efficiency and longevity of the PEM water electrolyser. Optimally designed flow channels ensure uniform pressure and velocity distribution across the stack, enabling high-pressure operation and facilitating high current densities. This study uses flow channel geometry inspired by authentic vine leaf patterns found in biomass, based on various plant leaves, including Soybean, Victoria Amazonica, Water Lily, Nelumbo Nucifera, Kiwi, and Acalypha Hispida leaves, as a novel channel pattern to design a PEM bipolar plate with a circular cross-section area of 13.85 cm2. The proposed bipolar design is further analysed with COMSOL Multiphysics to integrate the conservation of mass and momentum, molecular diffusion (Maxwell–Stefan), charge transfer equations, and other fabrication factors into a cohesive single-domain model. The simulation results showed that the novel designs have the most uniform velocity profile, lower pressure drop, superior pressure distribution, and heightened mixture homogeneity compared to the traditional serpentine models. Full article
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14 pages, 1734 KB  
Article
The Potential Threats of Spodoptera frugiperda on Six Economic Tree Species in the Tropical Region
by Jiabao Xue, Yi Chen, Xiangyi Kong, Ruizong Jia, Xiaoqi Jiang, Jingyuan Guo, Yunling Guo and Yan Yang
Forests 2024, 15(4), 701; https://doi.org/10.3390/f15040701 - 15 Apr 2024
Cited by 4 | Viewed by 2021
Abstract
Spodoptera frugiperda (J.E. Smith) is a highly significant agricultural pest that poses a threat to crop production worldwide. It is polyphagous, has a strong migratory ability, and is difficult to control, which makes it a threat not only to crops but also to [...] Read more.
Spodoptera frugiperda (J.E. Smith) is a highly significant agricultural pest that poses a threat to crop production worldwide. It is polyphagous, has a strong migratory ability, and is difficult to control, which makes it a threat not only to crops but also to woody plants. However, research on its adaptability to woody plants is limited. This study compares the feeding adaptations (survival rate, pupation time, pupation rate, weight, length, and daily food consumption), protective enzyme activities, and feeding preferences of S. frugiperda on leaves of six economically important tree species (Areca catechu L., Aquilaria sinensis (Lour.) Spreng, Cocos nucifera L., Camellia oleifera Abel, Dalbergia odorifera T. Chen, and Hevea brasiliensis (Willd. ex A. Juss.) Müll. Arg.), with Zea mays L. used as a control treatment. The results indicate that S. frugiperda did not survive when fed with A. catechu, C. oleifera, and D. odorifera. A. catechu had similar survival rates (83.33%), pupation (86.67%), weight, and length data compared to the maize control. C. nucifera had lower survival rates (46.67%) but no significant differences in pupation (76.67%), weight, and length data of S. frugiperda. H. brasiliensis exhibited significantly lower survival (50.00%) and pupation rates (46.67%) compared to maize. However, there was no significant difference in weight and length data, and its preference index was higher among the six tree species treatments. Therefore, A. sinensis is a vulnerable tree with a high risk, while H. brasiliensis and C. nucifera showed varying degrees of susceptibility. A. catechu, C. oleifera, and D. odorifera were found to be unsuitable hosts for S. frugiperda. In conclusion, this study extensively explores the feeding effects of S. frugiperda on six economically important tree species. It provides insights into the feeding preferences of the pest, thereby informing the potential threat posed by S. frugiperda to economically important trees. It helps to prevent further damage from S. frugiperda and provides a reference for agriculture and forestry to develop effective joint prevention and control measures. Full article
(This article belongs to the Special Issue Ecology and Management of Forest Pests—2nd Edition)
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11 pages, 8258 KB  
Article
Evaluation of the Susceptibility of Lotus Seeds (Nelumbo nucifera Gaertn.) to Aspergillus flavus Infection and Aflatoxin Contamination
by Abdelrahman Elamin, Sharmin Sultana and Shohei Sakuda
Toxins 2024, 16(1), 29; https://doi.org/10.3390/toxins16010029 - 7 Jan 2024
Cited by 5 | Viewed by 4327
Abstract
The seeds of lotus (Nelumbo nucifera Gaertn.) have been used as significant medicinal and nutritional ingredients worldwide. The abundant proteins and polysaccharides in lotus seeds make them susceptible to contamination by aflatoxin (AF), a fungal toxic metabolite. This study was conducted to [...] Read more.
The seeds of lotus (Nelumbo nucifera Gaertn.) have been used as significant medicinal and nutritional ingredients worldwide. The abundant proteins and polysaccharides in lotus seeds make them susceptible to contamination by aflatoxin (AF), a fungal toxic metabolite. This study was conducted to investigate the susceptibility of lotus seeds at different stages of ripening to AF contamination, as well as the mechanism of the contamination. Seven groups of lotus receptacles with seeds at different ripening stages (A–G, from immature to mature) were used for the experiment. Spores of Aspergillus flavus, an AF producer, were inoculated on the water-gap area of the seeds in each receptacle. Then, each receptacle was covered with a sterilized bag, and its stalk part was soaked in water containing a life-prolonging agent, after which it was kept at room temperature for 14 days. The AF content of each whole inoculated seed from the A–G groups and that of each seed part (pericarp, cotyledon, and embryo) from the D and E groups were determined using high-performance liquid chromatography. Microtome sections were prepared from the samples and observed under a light microscope and scanning electron microscope. The seeds from the A and D groups had higher AF contents than the seeds from the B, C, E, F, and G groups, indicating that the condition of the water-gap area and the development of the embryo and cotyledon parts of the seeds are associated with AF contamination. Full article
(This article belongs to the Special Issue Toxins: 15th Anniversary)
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9 pages, 2885 KB  
Article
The CYP80A and CYP80G Are Involved in the Biosynthesis of Benzylisoquinoline Alkaloids in the Sacred Lotus (Nelumbo nucifera)
by Chenyang Hao, Yuetong Yu, Yan Liu, An Liu and Sha Chen
Int. J. Mol. Sci. 2024, 25(2), 702; https://doi.org/10.3390/ijms25020702 - 5 Jan 2024
Cited by 4 | Viewed by 2496
Abstract
Bisbenzylisoquinoline and aporphine alkaloids are the two main pharmacological compounds in the ancient sacred lotus (Nelumbo nucifera). The biosynthesis of bisbenzylisoquinoline and aporphine alkaloids has attracted extensive attention because bisbenzylisoquinoline alkaloids have been reported as potential therapeutic agents for COVID-19. Our [...] Read more.
Bisbenzylisoquinoline and aporphine alkaloids are the two main pharmacological compounds in the ancient sacred lotus (Nelumbo nucifera). The biosynthesis of bisbenzylisoquinoline and aporphine alkaloids has attracted extensive attention because bisbenzylisoquinoline alkaloids have been reported as potential therapeutic agents for COVID-19. Our study showed that NnCYP80A can catalyze C-O coupling in both (R)-N-methylcoclaurine and (S)-N-methylcoclaurine to produce bisbenzylisoquinoline alkaloids with three different linkages. In addition, NnCYP80G catalyzed C-C coupling in aporphine alkaloids with extensive substrate selectivity, specifically using (R)-N-methylcoclaurine, (S)-N-methylcoclaurine, coclaurine and reticuline as substrates, but the synthesis of C-ring alkaloids without hydroxyl groups in the lotus remains to be elucidated. The key residues of NnCYP80G were also studied using the 3D structure of the protein predicted using Alphafold 2, and six key amino acids (G39, G69, A211, P288, R425 and C427) were identified. The R425A mutation significantly decreased the catalysis of (R)-N-methylcoclaurine and coclaurine inactivation, which might play important role in the biosynthesis of alkaloids with new configurations. Full article
(This article belongs to the Section Molecular Biophysics)
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19 pages, 11706 KB  
Article
E-Agriculture Planning Tool for Supporting Smallholder Cocoa Intensification Using Remotely Sensed Data
by Kanika Singh, Ignacio Fuentes, Dhahi Al-Shammari, Chris Fidelis, James Butubu, David Yinil, Amin Sharififar, Budiman Minasny, David I Guest and Damien J Field
Remote Sens. 2023, 15(14), 3492; https://doi.org/10.3390/rs15143492 - 11 Jul 2023
Cited by 4 | Viewed by 3766
Abstract
Remote sensing approaches are often used to monitor land cover change. However, the small physical size (about 1–2 hectare area) of smallholder orchards and the cultivation of cocoa (Theobroma cocoa L.) under shade trees make the use of many popular satellite sensors [...] Read more.
Remote sensing approaches are often used to monitor land cover change. However, the small physical size (about 1–2 hectare area) of smallholder orchards and the cultivation of cocoa (Theobroma cocoa L.) under shade trees make the use of many popular satellite sensors inefficient to distinguish cocoa orchards from forest areas. Nevertheless, high-resolution satellite imagery combined with novel signal extraction methods facilitates the differentiation of coconut palms (Cocos nucifera L.) from forests. Cocoa grows well under established coconut shade, and underplanting provides a viable opportunity to intensify production and meet demand and government targets. In this study, we combined grey-level co-occurrence matrix (GLCM) textural features and vegetation indices from Sentinel datasets to evaluate the sustainability of cocoa expansion given land suitability for agriculture and soil capability classes. Additionally, it sheds light on underexploited areas with agricultural potential. The mapping of areas where cocoa smallholder orchards already exist or can be grown involved three main components. Firstly, the use of the fine-resolution C-band synthetic aperture radar and multispectral instruments from Sentinel-1 and Sentinel-2 satellites, respectively. Secondly, the processing of imagery (Sentinel-1 and Sentinel-2) for feature extraction using 22 variables. Lastly, fitting a random forest (RF) model to detect and distinguish potential cocoa orchards from non-cocoa areas. The RF classification scheme differentiated cocoa (for consistency, the coconut–cocoa areas in this manuscript will be referred to as cocoa regions or orchards) and non-cocoa regions with 97 percent overall accuracy and over 90 percent producer’s and user’s accuracies for the cocoa regions when trained on a combination of spectral indices and GLCM textural feature sets. The top five variables that contributed the most to the model were the red band (B4), red edge curve index (RECI), blue band (B2), near-infrared (NIR) entropy, and enhanced vegetation index (EVI), indicating the importance of vegetation indices and entropy values. By comparing the classified map created in this study with the soil and land capability legacy information of Bougainville, we observed that potential cocoa regions are already rated as highly suitable. This implies that cocoa expansion has reached one of many intersecting limits, including land suitability, political, social, economic, educational, health, labour, and infrastructure. Understanding how these interactions limit cocoa productivity at present will inform further sustainable growth. The tool provides inexpensive and rapid monitoring of land use, suitable for a sustainable planning framework that supports responsible agricultural land use management. The study developed a heuristic tool for monitoring land cover changes for cocoa production, informing sustainable development that balances the needs and aspirations of the government and farming communities with the protection of the environment. Full article
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18 pages, 2670 KB  
Article
6mA DNA Methylation on Genes in Plants Is Associated with Gene Complexity, Expression and Duplication
by Yue Zhang, Qian Zhang, Xingyu Yang, Xiaofeng Gu, Jinming Chen and Tao Shi
Plants 2023, 12(10), 1949; https://doi.org/10.3390/plants12101949 - 10 May 2023
Cited by 12 | Viewed by 4421
Abstract
N6-methyladenine (6mA) DNA methylation has emerged as an important epigenetic modification in eukaryotes. Nevertheless, the evolution of the 6mA methylation of homologous genes after species and after gene duplications remains unclear in plants. To understand the evolution of 6mA methylation, we [...] Read more.
N6-methyladenine (6mA) DNA methylation has emerged as an important epigenetic modification in eukaryotes. Nevertheless, the evolution of the 6mA methylation of homologous genes after species and after gene duplications remains unclear in plants. To understand the evolution of 6mA methylation, we detected the genome-wide 6mA methylation patterns of four lotus plants (Nelumbo nucifera) from different geographic origins by nanopore sequencing and compared them to patterns in Arabidopsis and rice. Within lotus, the genomic distributions of 6mA sites are different from the widely studied 5mC methylation sites. Consistently, in lotus, Arabidopsis and rice, 6mA sites are enriched around transcriptional start sites, positively correlated with gene expression levels, and preferentially retained in highly and broadly expressed orthologs with longer gene lengths and more exons. Among different duplicate genes, 6mA methylation is significantly more enriched and conserved in whole-genome duplicates than in local duplicates. Overall, our study reveals the convergent patterns of 6mA methylation evolution based on both lineage and duplicate gene divergence, which underpin their potential role in gene regulatory evolution in plants. Full article
(This article belongs to the Special Issue Advances in Aquatic Plants Research)
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17 pages, 3346 KB  
Article
Green Extraction of Phenolic Compounds from Lotus (Nelumbo nucifera Gaertn) Leaf Using Deep Eutectic Solvents: Process Optimization and Antioxidant Activity
by Jiwei Yang, Zhi Yan, Lingna Li, Lifen Zhang, Mengjian Zhao, Huixiang Yi, Ziying Wang, Gang Li, Zhenhua Wang, Mei Li and Chengjun Ma
Separations 2023, 10(5), 272; https://doi.org/10.3390/separations10050272 - 22 Apr 2023
Cited by 15 | Viewed by 4333
Abstract
Natural deep eutectic solvents (NDESs) were used to extract flavonoids and polyphenols from lotus (Nelumbo nucifera Gaertn.) leaves at the same time, and the extraction process was optimized to provide reference for the effective development and utilization of lotus leaves. The deep [...] Read more.
Natural deep eutectic solvents (NDESs) were used to extract flavonoids and polyphenols from lotus (Nelumbo nucifera Gaertn.) leaves at the same time, and the extraction process was optimized to provide reference for the effective development and utilization of lotus leaves. The deep eutectic solvents (DESs) with the highest yield of flavonoids and polyphenols were screened out from 19 different NDES combinations. The response surface method was employed to optimize the extraction process. After a rational design, a lactic acid/glycerol (molar ratio 1:2) DES was chosen as the optimal extraction solvent, and the optimum extraction parameters were as follow: water content (29%), liquid–solid ratio (37:1 mL/g), extraction time (61 min), and extraction temperature (53 °C). Compared with traditional water extraction or ethanol extraction, it improved the yield of flavonoids (126.10 mg/g) and polyphenols (126.10 mg/g). By LC–MS analysis, 19 flavonoids or organic acid compounds with known compound structural formulae were identified in the DES extract of lotus leaves. By comparing the free radical scavenging ability and total reducing ability, the extraction of lotus leaves using the NDES method was superior to both ethanol extraction and water extraction. It is a green, environmentally friendly, and efficient extraction method for antioxidants from leaves of Nelumbo nucifera Gaertn. Full article
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17 pages, 3592 KB  
Article
The Inhibition of Autophagy and Pyroptosis by an Ethanol Extract of Nelumbo nucifera Leaf Contributes to the Amelioration of Dexamethasone-Induced Muscle Atrophy
by Eunji Park, Hojung Choi, Cao-Sang Truong and Hee-Sook Jun
Nutrients 2023, 15(4), 804; https://doi.org/10.3390/nu15040804 - 4 Feb 2023
Cited by 20 | Viewed by 4443
Abstract
Muscle atrophy is characterized by a decline in muscle mass and function. Excessive glucocorticoids in the body due to aging or drug treatment can promote muscle wasting. In this study, we investigated the preventive effect of Nelumbo nucifera leaf (NNL) ethanolic extract on [...] Read more.
Muscle atrophy is characterized by a decline in muscle mass and function. Excessive glucocorticoids in the body due to aging or drug treatment can promote muscle wasting. In this study, we investigated the preventive effect of Nelumbo nucifera leaf (NNL) ethanolic extract on muscle atrophy induced by dexamethasone (DEX), a synthetic glucocorticoid, in mice and its underlying mechanisms. The administration of NNL extract increased weight, cross-sectional area, and grip strength of quadriceps (QD) and gastrocnemius (GA) muscles in DEX-induced muscle atrophy in mice. The NNL extract administration decreased the expression of muscle atrophic factors, such as muscle RING-finger protein-1 and atrogin-1, and autophagy factors, such as Beclin-1, microtubule-associated protein 1A/1B-light chain 3 (LC3-I/II), and sequestosome 1 (p62/SQSTM1) in DEX-injected mice. DEX injection increased the protein expression levels of NOD-like receptor pyrin domain-containing protein 3 (NLRP3), cleaved-caspase-1, interleukin-1beta (IL-1β), and cleaved-gasdermin D (GSDMD), which were significantly reduced by NNL extract administration (500 mg/kg/day). In vitro studies using C2C12 myotubes also revealed that NNL extract treatment inhibited the DEX-induced increase in autophagy factors, pyroptosis-related factors, and NF-κB. Overall, the NNL extract prevented DEX-induced muscle atrophy by downregulating the ubiquitin–proteasome system, autophagy pathway, and GSDMD-mediated pyroptosis pathway, which are involved in muscle degradation. Full article
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Article
Optimization of Ultrasound-Assisted Extraction from Young Coconut Mesocarp in the Rapid Extraction of Phenolic Compounds and Antioxidant Activity
by Lulum Leliana, Widiastuti Setyaningsih, Miguel Palma, Supriyadi Supriyadi and Umar Santoso
Agronomy 2022, 12(11), 2798; https://doi.org/10.3390/agronomy12112798 - 10 Nov 2022
Cited by 7 | Viewed by 3341
Abstract
Coconut (Cocos nucifera) fruit has attracted consumer interest due to its health benefits, especially the consumption of coconut water produced from 6–7-month-old coconut fruit. Consequently, by-products from young coconut fruit are also being expanded, including coconut mesocarp containing phenolic compounds. Therefore, [...] Read more.
Coconut (Cocos nucifera) fruit has attracted consumer interest due to its health benefits, especially the consumption of coconut water produced from 6–7-month-old coconut fruit. Consequently, by-products from young coconut fruit are also being expanded, including coconut mesocarp containing phenolic compounds. Therefore, this study aimed to provide new applications for young coconut mesocarp wastes. Specifically, optimizing the ultrasound-assisted extraction (UAE) of phenolic compounds from coconut mesocarp using a Box–Behnken design in conjunction with response surface methodology (RSM). The effects of three extraction variables, such as temperature (10–70 °C), solvent-to-sample ratio (20:1–10:1 mL g−1), and pulse duty cycle (0.4–1.0 s−1) were examined on the level of total phenolic content (TPC) and antioxidant activity of the extract. Subsequently, the optimum UAE condition was predicted using RSM models with coefficients of determination (R2) higher than 0.94, low prediction errors (less than 2.34), and non-significant lack-of-fit values (p < 0.05) for the two responses. Extraction time was evaluated through kinetic (5 to 25 min) studies applying the optimum extraction temperature (70 °C), solvent-to-sample ratio (20:1 mL g−1), and pulse duty cycle (0.55 s−1). An efficient extraction was achieved within 5 min, resulting in an extract with 47.78 ± 1.24 mg GAE 100 g−1 DW for the total phenolic compounds and high antioxidant activity (87.28 ± 1.01% DPPH). Extraction by ultrasound was then concluded to facilitate a fast extraction rate with high reproducibility (coefficients of variation were less than 3% in the levels of antioxidant activity and phenolic compounds). Full article
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