Search Results (1,768)

Dry direct seeding (DDS) is a water-saving and high-efficiency rice cultivation system. However, drought stress during DDS severely constrains seedling establishment. This study used the conventional rice variety Zhonghua 11 (ZH11) and the drought-tolerant hybrid Hanyou 73 to investigate the effects of exogenous silicon (Si) on seed germination and seedling growth under drought stress, and to explore the underlying mechanisms of Si-enhanced drought tolerance. Drought stress was imposed using PEG-6000 simulation and pot experiments with different soil relative water contents (60%, 45%, 25%, and 10%). Si treatment significantly alleviated simulated drought inhibition of seed germination, increasing germination percentage and index, improving seedling growth in both varieties. Under simulated DDS conditions, Si significantly improved plant height, biomass, and root development, while maintaining higher net photosynthetic rate, stomatal conductance, intercellular CO₂ concentration, transpiration rate, and chlorophyll content. Meanwhile, Si reduced oxidative damage by promoting proline accumulation, enhancing peroxidase (POD) and catalase (CAT) activities in both leaves and roots, reducing malondialdehyde (MDA) accumulation, and upregulating the expression of key drought-responsive genes (SNAC1, DREB1A, SKIPa, P5CS2). Furthermore, Si upregulated the expression of genes involved in abscisic acid (ABA) (ABA1, ABA2, MHZ5, ABI3) and jasmonic acid (JA) (AOS2, AOS3, JAR1, JAR2, MYC2, COI1a) biosynthesis and signaling. Compared with the wild-type, the ABA signaling mutant abi3 and the JA signaling mutant myc2 exhibited significantly attenuated improvement of plant growth by Si treatment. Collectively, Si enhances antioxidant capacity and osmotic adjustment, maintains photosynthetic function, and is associated with the activation of ABA and JA signaling pathways, which together alleviate the inhibition of rice seedling establishment under DDS-associated drought stress. Our findings provide a theoretical basis for the application of Si fertilizer in DDS rice production. Full article

Rapeseed (Brassica napus L.) growth and productivity are severely constrained by drought stress worldwide. Stomata are central regulators of plant transpiration and gas exchange, and therefore, represent key targets for enhancing water-use efficiency and drought tolerance. The transcription factor ABSCISIC ACID INSENSITIVE 4 (ABI4), a key regulator of the abscisic acid (ABA) signaling pathway, plays crucial roles in plant abiotic stress responses and stomatal regulation. Nevertheless, the biological functions of BnaABI4 in B. napus remain largely unclear. In this study, four BnaABI4 paralogs were identified in the elite rapeseed cultivar ZS11 through genome-wide identification and comprehensive bioinformatic analyses. Each BnaABI4 protein harbors only one conserved AP2 domain, and their promoters contain multiple stress/hormone-responsive cis-regulatory elements (CREs). We subsequently generated BnaABI4-4 overexpression (OE) lines as well as BnaABI4 CRISPR/Cas9-mediated knockout (KO) transgenic lines. Phenotypic assays demonstrated that OE line had reduced transpiration rate (Tr), stomatal conductance (Gs) and stomatal density, along with enhanced drought tolerance, whereas KO lines showed the opposite phenotype. Transcriptome profiling identified numerous differentially expressed genes (DEGs) enriched in biological pathways associated with stomatal regulation, ABA signal transduction, and drought acclimation. Further Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses confirmed significant enrichment of DEGs in processes including stomatal development, stomatal movement, reactive oxygen species (ROS) homeostasis, and drought tolerance. Collectively, our findings demonstrate that BnaABI4 negatively regulates stomatal density while positively contributing to drought tolerance in B. napus. This study lays a mechanistic foundation for genetic improvement and molecular breeding of drought-tolerant rapeseed cultivars. Full article

Plants are constantly exposed to diverse abiotic stresses, including drought, salinity, and extreme temperatures, which severely limit growth, development, and crop productivity. These stresses disrupt physiological, biochemical, and molecular processes, leading to reduced photosynthesis, altered water and ion homeostasis, and accumulation of reactive oxygen species (ROS). Plants have evolved sophisticated sensing and signaling mechanisms to perceive these stresses, with phytohormones playing central roles in mediating adaptive responses. Key hormones, including abscisic acid (ABA), salicylic acid (SA), jasmonates (JAs), gibberellins (GAs), auxin (IAA), ethylene (ET), melatonin, and strigolactones (SLs), regulate stress tolerance by controlling stomatal behavior, root architecture, antioxidant systems, osmolyte accumulation, and stress-responsive gene expression. Importantly, these hormones operate within an intricate network of crosstalk, integrating multiple signaling pathways to balance growth and stress adaptation. Interactions among ABA, GA, JA, SA, auxin, ET, SLs, and melatonin enable plants to coordinate transcriptional regulation, protein phosphorylation, and ROS signaling, optimizing survival under fluctuating environmental conditions. Understanding the molecular mechanisms underlying hormonal crosstalk and their roles in abiotic stress tolerance provides valuable insights for developing resilient crops in the face of climate change. Full article

Plant U-box E3 ubiquitin ligases (PUBs) are involved in various biological processes in response to abiotic stress. Recent studies have shown that E3 ubiquitin ligases can regulate the production of important compounds in medicinal plants by targeted degradation of transcription factors. Abscisic acid (ABA), a plant stress response hormone, can cause changes in the content of the medically important monoterpene indole alkaloids (MIAs) in U. rhynchophylla. In this study, we explored the relationship between UrPUB gene expression and MIA content. ABA was applied to tissue-cultured seedlings of U. rhynchophylla, resulting in consistent changes in the content of four MIAs. Seventy-three UrPUB genes were identified and bioinformatically characterized from the genome sequence of U. rhynchophylla. The expression levels of transcription factors involved in regulating the biosynthesis pathway of MIAs and UrPUB genes with higher RNA transcript levels in the roots were determined. Co-expression association analysis revealed that UrPUB17, UrPUB40, UrPUB41, UrPUB44 and UrPUB55 negatively correlate with UrGATA8 and UrWRKY37 under ABA stimulation. Based solely on these correlation data, we hypothesize that these UrPUBs might regulate MIA biosynthesis via ubiquitination of UrGATA8 and UrWRKY37, but direct evidence (protein interaction, ubiquitination, degradation, or genetic manipulation) is lacking. This study identified the UrPUB gene family in the U. rhynchophylla genome and proposes this ubiquitination model as a testable hypothesis, not a demonstrated mechanism. These findings provide new insights into the biological function of the PUB family in response to ABA. Full article

m⁶A is an important RNA modification involved in post-transcriptional regulation in plants. However, putative m⁶A writers and erasers in G. biloba remain poorly characterized. In this study, a total of 17 candidate m⁶A regulatory genes, including 8 writers and 9 erasers, were identified through genome-wide analysis. Phylogenetic and structural analyses indicated that these proteins are generally conserved, with some members showing potential functional divergence. Promoter analysis revealed abundant hormone- and stress-responsive cis-elements, and expression profiling showed tissue-specific patterns and dynamic responses to ABA, MeJA, and NaCl treatments, with erasers exhibiting greater transcriptional responsiveness than writers. In addition, protein interaction network and phase separation predictions suggested potential roles in RNA methylation-related processes. These results provide a foundation for further functional studies of m⁶A regulation in G. biloba. Full article

Background: This study examined peer interactions among late-diagnosed autistic adolescents, focusing on biological sex differences. Methods: Participants included 61 adolescents aged 12–18 years (31 boys, 30 girls) with an Intelligence Quotient (IQ) > 75, all diagnosed within the past three years. Peer interactions were assessed using the APIOS-A, an adapted version of the preschool observational tool (APIOS). Parents reported on autistic traits via the Social Responsiveness Scale (SRS-2), which measures social communication difficulties; socialization skills through the Adaptive Behavior Assessment System (ABAS-II), which assesses adaptive functioning; and behavioral problems using the Child Behavior Checklist (CBCL), which identifies emotional and behavioral issues. These measures were utilized to compare social profiles across sexes. Results: The APIOS-A demonstrated good reliability for identifying socio-communicative difficulties in both boys and girls. Findings indicated that boys and girls showed similar peer interaction challenges, with subtle differences in conversational reciprocity, cognitive flexibility, and humor use. Associations between behavioral characteristics and peer patterns varied by sex, highlighting the importance of tailored approaches. Conclusions: These results underscore the need for sex-sensitive assessment tools and tailored interventions for late-diagnosed autistic adolescents. Integrating observational and parental measures may enhance understanding and support their social development. Full article

Alternative splicing (AS) coupled with nonsense-mediated decay (NMD) is an important post-transcriptional mechanism that regulates the expression of many genes, including serine/arginine-rich (SR) proteins across eukaryotes. In plants, SR proteins participate in diverse developmental processes and stress responses, particularly in abscisic acid (ABA) signaling. However, the functional differences among individual splice isoforms of SR proteins remain poorly understood. Here, we investigated SCL30a, a plant-specific SR protein in Arabidopsis thaliana. By integrating third-generation long-read transcriptome sequencing, NMD stability assays, and subcellular localization analyses, we identified five alternatively spliced SCL30a transcripts. Among them, SCL30a.2 and SCL30a.3 contain premature termination codons (PTCs), display nucleocytoplasmic localization, and are rapidly degraded through the NMD pathway. In contrast, the other three isoforms, SCL30a.1, SCL30a.4, and SCL30a.5, retain an intact RS domain and localize exclusively to the nucleus. Functional analyses showed that SCL30a acts as a positive regulator of ABA signaling. Loss-of-function mutants of SCL30a displayed reduced ABA sensitivity in both root growth and seed germination assays, whereas complementation or overexpression of three stable isoforms of SCL30a (SCL30a.1, SCL30a.4, and SCL30a.5) enhanced ABA responsiveness. Transcriptome analysis further showed that the expression of a subset of ABA-related genes, particularly SnRK2.6, was significantly altered in ABA-treated scl30a mutants and SCL30a.1-OE lines compared with WT plants. In addition, genetic evidence showed that overexpression of SnRK2.6 rescued the ABA-insensitive phenotype of the scl30a mutant. Together, these findings suggest that SnRK2.6 may function as a candidate downstream component associated with SCL30a-mediated ABA responses. Full article

Systemic regulation of photosynthesis is crucial for plant survival in variable environments, yet the hormonal mechanisms coordinating photosynthetic responses to local stimuli are not fully elucidated. This study investigates the interplay between jasmonates (JAs) and abscisic acid (ABA) in systemic photosynthetic responses induced by local heat stress in Arabidopsis thaliana. Using phytohormone quantification, chlorophyll fluorescence and gas exchange measurements in wild-type and transgenic plants impaired in JA biosynthesis, this study showed that local heating-induced variation potential propagation triggers JA biosynthesis in systemic unstimulated leaves, followed by changes in ABA content, stomatal conductance and photosynthetic activity. Rapid systemic increases in jasmonoyl-L-isoleucine (JA-Ile) levels are essential for the systemic decreases in stomatal conductance and the consequent reduction in carbon assimilation. Systemic increases in JA-Ile levels also contribute to systemic accumulation of ABA, likely to maintain reduced stomatal conductance. Thus, the data support a model in which JA-Ile acts as a mediator of early stages of the systemic photosynthetic response, whereas ABA likely contributes to late stages of this response. These results highlight the complex integration of hormonal signals in the regulation of photosynthesis under stress conditions. Full article

Drought stress is the most pervasive abiotic constraint on global crop productivity, with projected intensification under climate change threatening the yields of staple crops including wheat, rice, maize, and legumes. Conventional breeding approaches have delivered limited gains against drought tolerance, constrained by the polygenic and multifactorial nature of stress adaptation, the complexity of genotype-by-environment interactions, and the inadequacy of field-based phenotyping under variable stress conditions. Omics technologies, including genomics, transcriptomics, proteomics, metabolomics, epigenomics, and phenomics, have substantially advanced the molecular dissection of drought tolerance by enabling high-resolution characterization of stress-responsive genes, regulatory networks, adaptive proteins, and metabolic reprogramming pathways. Specific traits targeted include root system architecture and depth, osmotic adjustment capacity through proline and glycine betaine accumulation, antioxidant defense mechanisms, ABA-mediated stomatal regulation, LEA protein accumulation, epigenetic stress memory, and yield stability under water deficit. This review systematically examines omics-based strategies for drought stress mitigation across major crops, highlighting individual omics contributions, multi-omics integration frameworks, computational tools including machine learning and AI-driven predictive modelling, and translational breeding applications. Case studies in wheat, rice, maize, and legumes illustrate how omics-driven approaches accelerate precision breeding for drought resilience through marker-assisted selection, genomic selection, and CRISPR-based gene editing. Challenges including data integration complexity, high implementation costs, limited cross-species transferability, and the need for field-scale validation of microbiome-based strategies are critically addressed. Future perspectives encompassing single-cell and spatial omics, AI-driven predictive breeding, digital agriculture integration, and international data governance frameworks are discussed. By aligning with climate-smart agriculture principles, multi-omics approaches provide a robust and transformative foundation for developing drought-resilient crop cultivars suitable for water-limited production systems worldwide. Full article

Background: MYB transcription factors are key regulators of plant growth, development, secondary metabolism, and stress responses. However, this family has not been systematically characterized in the traditional medicinal plant Platycodon grandiflorus, and its roles in flavonoid biosynthesis remain largely unknown. Methods: We performed genome-wide identification of the MYB family using a combined HMMER and BLASTP approach with manual domain validation. Phylogenetic analysis was conducted on conserved MYB domains, followed by synteny, gene structure, conserved motif, and promoter cis-element analyses. Expression patterns under methyl jasmonate (MeJA) treatment were examined via transcriptomics and RT-qPCR. Protein-protein interaction networks were predicted using STRING based on Arabidopsis homologs. Subcellular localization of candidate proteins was tested in Nicotiana benthamiana leaf epidermal cells. Results: A total of 170 PgMYB members were identified, comprising 52.9% 1R-MYB and 44.1% 2R-MYB. They clustered into 26 subgroups (P1–P26), with 1R-MYBs enriched in subgroup P1 (82 members). Synteny analysis revealed 192 collinear blocks between P. grandiflorus and Arabidopsis, and all 26 syntenic gene pairs examined had Ka/Ks < 1, indicating strong purifying selection. Promoter regions were enriched in hormone- (72.9% ABA-responsive) and stress-responsive elements. Nine selected genes showed consistent MeJA-induced expression changes between RNA-seq and RT-qPCR. Integrated analysis of phylogeny, expression correlation, and predicted protein-protein interactions nominated PgMYB47, PgMYB142, and PgMYB151 as candidate regulators of flavonoid biosynthesis. All three proteins localized to the nucleus in N. benthamiana cells. Conclusions: This study provides the first comprehensive characterization of the P. grandiflorus MYB family, highlighting its evolutionary conservation and expression dynamics. The nominated candidates offer a foundation for future functional validation of flavonoid biosynthesis regulation. Full article

Drought stress is one of the most severe constraints affecting wheat production worldwide. Under these conditions, the development of sustainable and economically viable strategies, such as seed priming, is essential to improve wheat performance and drought resilience. The present study carried out a greenhouse experiment on four Mediterranean durum wheat cultivars (Triticum turgidum ssp. durum Desf), i.e., Karim (Kr) and Khiar (Kh) from Tunisia and Espelta (Esp) and Mocho (Mo) from Spain, subjected to drought stress conditions, and using primed abscisic acid (ABA), indole-3-acetic acid (IAA), melatonin (Mlt), and salicylic acid (SA), and non-primed seeds. In order to assess the physio-biochemical responses of durum wheat, such as plant growth, chlorophyll, relative water content (RWC), water potential (Ψw), osmotic potential (Ψs), proline, soluble sugars, starch, glycine betaine, hydrogen peroxide, malondialdehyde, and antioxidant enzyme activities. The results showed that water stress significantly reduced plant growth, SPAD index, RWC, Ψw, and Ψs, while upregulating H₂O₂ and MDA levels, depending on the wheat cultivars. Soluble sugars decreased, whereas starch, glycine betaine, and proline accumulated in all cultivars. Superoxide dismutase activity was reduced (24–37%) under water stress as compared to the control condition, while APX, CAT, and POD activities significantly increased. Among the cultivars, Esp exhibited the greatest plasticity in response to water deficit, whereas Kh appeared to be most sensitive. Furthermore, the present results revealed that the priming durum wheat seeds with ABA, IAA, Mlt, and SA improved leaf hydration, particularly through soluble sugar accumulation. Seed priming also alleviated oxidative stress by reducing H₂O₂ and MDA levels and stimulating APX, CAT, POD, and SOD activities. Plants grown from non-primed seeds of Spanish and Tunisian cultivars exhibited differential responses to drought stress, and those derived from primed seeds showed varying degrees of enhanced drought tolerance. Espelta demonstrated a high potential for stress tolerance and responsiveness to priming, followed by Karim, whereas Khiar was the most sensitive cultivar. Overall, the cultivars can be ranked in decreasing order of stress tolerance as Esp > Kr > Mo > Kh. These findings highlight the potential of phytohormone-based seed priming as an efficient and practical approach to enhance drought resilience in durum wheat, offering promising prospects for improving crop performance and stability under increasingly water-limited conditions in the era of climate change. Full article

Soil salinity is a major constraint on soybean (Glycine max) production. While ionic toxicity is a primary factor, the integration of metabolic and hormonal responses remains unclear. Here, we characterize the salt-sensitive mutant, soybean salt-sensitive 1 (sss1), using physiological, metabolomic, and transcriptomic analyses. We demonstrate that the primary defect in sss1 is disrupted ion homeostasis, characterized by excessive Na⁺ accumulation, impaired K⁺ retention, and a high Na⁺/K⁺ ratio. Multi-omics integration revealed that sss1 exhibits extensive metabolic reprogramming. Notably, mannose was identified as a potential hub linking carbohydrate metabolism and glycosylation; its reduction in the mutant suggests a metabolic vulnerability. Furthermore, the mutant showed a dual impairment of abscisic acid (ABA) and jasmonic acid (JA) signaling, evidenced by reduced hormone levels and downregulation of biosynthetic genes. Collectively, our results associate the sss1 locus with systemic disruptions in ion homeostasis, hormone signaling, and metabolic reprogramming. This multi-omics landscape provides a foundation for the future cloning of SSS1 and elucidating the molecular mechanisms underlying salt sensitivity in soybean. Full article

Peanut (Arachis hypogaea L.) is a globally vital oilseed and cash crop. The LONELY GUY (LOG) gene family acts as a core regulator of cytokinin activation, governing plant meristem maintenance, growth, development, and stress responses. However, the genome-wide characteristics, evolutionary dynamics, and biological functions remain largely uncharacterized in peanut. In this study, 24 AhLOG genes were identified from the cultivated peanut Tifrunner. Phylogenetic analysis, gene structure characterization, and conserved motifs validated the high evolutionary conservation of the AhLOG gene family, and subcellular localization prediction indicated most AhLOG proteins were distributed in the cytoplasm. Promoter cis-element analysis revealed abundant hormone-responsive and stress-responsive cis-elements in the promoter regions of the AhLOG genes. Synteny analysis uncovered highly conserved collinear relationships between cultivated peanut and its diploid progenitors (A. duranensis, A. ipaensis) as well as the wild tetraploid relative (A. monticola), while numerous conserved orthologous syntenic pairs were detected between peanut and the model plant Arabidopsis thaliana. Tissue expression profiles revealed remarkable functional divergence among members: AhLOG3 and AhLOG16 were widely involved in both vegetative and reproductive development, while several other AhLOG genes exhibited strict tissue-specific expression. Furthermore, qRT-PCR analysis demonstrated that AhLOG genes were significantly induced by abscisic acid (ABA), gibberellin (GA), indole-3-acetic acid (IAA), methyl jasmonate (MeJA), drought and salt treatments, with distinct expression patterns under these abiotic stress conditions. Collectively, this work provides a systematic understanding of the AhLOG gene family and offers key candidate genes along with theoretical support for further functional investigation and molecular breeding of stress-resistant peanut. Full article

Reducing herbicide input in paddy fields is essential for sustainable rice production and long-term soil health. Florpyrauxifen-benzyl effectively controls the dominant paddy weed barnyardgrass (Echinochloa crus-galli), yet excessive application poses environmental risks. Here, we investigated whether the compound adjuvant Sijiling, containing nonionic and anionic surfactants, could enable significant dose reduction in florpyrauxifen-benzyl while maintaining weed control efficacy and improving soil–plant system functions. Greenhouse dose–response assays and two-year field trials conducted in 2021 and 2022 demonstrated that the adjuvant permitted a 50% reduction in herbicide application without compromising control of barnyardgrass or other paddy weeds. Mechanistically, Sijiling disrupted the leaf cuticular wax barrier and amplified ethylene and ABA biosynthesis over two-fold. The reduced herbicide rate lowered residues in rice and soil, increased soil organic carbon and available potassium, and enhanced microbial diversity, particularly enriching beneficial Acidobacteria. Grain yield increased significantly under the reduced-input strategy, with Mantel analysis linking yield gains to improved soil available potassium and organic carbon. Our findings demonstrate that adjuvant-enabled herbicide dose reduction is an effective and sustainable weed management strategy for paddy rice, maintaining robust weed suppression while delivering measurable co-benefits for soil health and crop productivity, thereby supporting the sustainable intensification of rice-based cropping systems. Full article

Seed germination is a critical determinant of seedling establishment, stress resistance, and final yield. ABA catabolism plays a central role in releasing seed dormancy and promoting germination, and ABA8ox is the key rate-limiting enzyme in this process. In this study, we used wild-type maize B73, and ZmABA8ox1b CRISPR-Cas9 knockout mutant as materials to investigate the biological function of ZmABA8ox1b. Compared with the wild type, the zmaba8ox1b mutant significantly delayed seed germination and enhanced the sensitivity to exogenous ABA. Endogenous ABA content in mutant embryos was drastically increased, indicating that ZmABA8ox1b is essential for ABA degradation during germination. The loss of ZmABA8ox1b function led to the activation of the ABA signaling pathway and severely impaired the responsiveness to exogenous ABA. Moreover, the mutation disturbed the expression and ABA responsiveness of auxin, gibberellin, ethylene, jasmonic acid, and brassinosteroid pathways, leading to a hormonal network imbalance. In conclusion, ZmABA8ox1b positively regulates maize seed germination by coordinating ABA catabolism and multi-hormone signal crosstalk. This study preliminarily clarifies the molecular mechanism of ZmABA8ox1b in germination control and provides important gene resources and theoretical support for breeding maize varieties. Full article