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Authors = Kenneth N. Brown

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15 pages, 946 KiB  
Article
The Development of an Infrastructure to Facilitate the Use of Whole Genome Sequencing for Population Health
by Nephi A. Walton, Brent Hafen, Sara Graceffo, Nykole Sutherland, Melanie Emmerson, Rachel Palmquist, Christine M. Formea, Maricel Purcell, Bret Heale, Matthew A. Brown, Christopher J. Danford, Sumathi I. Rachamadugu, Thomas N. Person, Katherine A. Shortt, G. Bryce Christensen, Jared M. Evans, Sharanya Raghunath, Christopher P. Johnson, Stacey Knight, Viet T. Le, Jeffrey L. Anderson, Margaret Van Meter, Teresa Reading, Derrick S. Haslem, Ivy C. Hansen, Betsey Batcher, Tyler Barker, Travis J. Sheffield, Bhaskara Yandava, David P. Taylor, Pallavi Ranade-Kharkar, Christopher C. Giauque, Kenneth R. Eyring, Jesse W. Breinholt, Mickey R. Miller, Payton R. Carter, Jason L. Gillman, Andrew W. Gunn, Kirk U. Knowlton, Joshua L. Bonkowsky, Kari Stefansson, Lincoln D. Nadauld and Howard L. McLeodadd Show full author list remove Hide full author list
J. Pers. Med. 2022, 12(11), 1867; https://doi.org/10.3390/jpm12111867 - 8 Nov 2022
Cited by 7 | Viewed by 3281
Abstract
The clinical use of genomic analysis has expanded rapidly resulting in an increased availability and utility of genomic information in clinical care. We have developed an infrastructure utilizing informatics tools and clinical processes to facilitate the use of whole genome sequencing data for [...] Read more.
The clinical use of genomic analysis has expanded rapidly resulting in an increased availability and utility of genomic information in clinical care. We have developed an infrastructure utilizing informatics tools and clinical processes to facilitate the use of whole genome sequencing data for population health management across the healthcare system. Our resulting framework scaled well to multiple clinical domains in both pediatric and adult care, although there were domain specific challenges that arose. Our infrastructure was complementary to existing clinical processes and well-received by care providers and patients. Informatics solutions were critical to the successful deployment and scaling of this program. Implementation of genomics at the scale of population health utilizes complicated technologies and processes that for many health systems are not supported by current information systems or in existing clinical workflows. To scale such a system requires a substantial clinical framework backed by informatics tools to facilitate the flow and management of data. Our work represents an early model that has been successful in scaling to 29 different genes with associated genetic conditions in four clinical domains. Work is ongoing to optimize informatics tools; and to identify best practices for translation to smaller healthcare systems. Full article
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35 pages, 1859 KiB  
Article
Personal Digital Twin: A Close Look into the Present and a Step towards the Future of Personalised Healthcare Industry
by Radhya Sahal, Saeed H. Alsamhi and Kenneth N. Brown
Sensors 2022, 22(15), 5918; https://doi.org/10.3390/s22155918 - 8 Aug 2022
Cited by 109 | Viewed by 14354
Abstract
Digital twins (DTs) play a vital role in revolutionising the healthcare industry, leading to more personalised, intelligent, and proactive healthcare. With the evolution of personalised healthcare, there is a significant need to represent a virtual replica for individuals to provide the right type [...] Read more.
Digital twins (DTs) play a vital role in revolutionising the healthcare industry, leading to more personalised, intelligent, and proactive healthcare. With the evolution of personalised healthcare, there is a significant need to represent a virtual replica for individuals to provide the right type of care in the right way and at the right time. Therefore, in this paper, we surveyed the concept of a personal digital twin (PDT) as an enhanced version of the DT with actionable insight capabilities. In particular, PDT can bring value to patients by enabling more accurate decision making and proper treatment selection and optimisation. Then, we explored the progression of PDT as a revolutionary technology in healthcare research and industry. However, although several research works have been performed for smart healthcare using DT, PDT is still at an early stage. Consequently, we believe that this work can be a step towards smart personalised healthcare industry by guiding the design of industrial personalised healthcare systems. Accordingly, we introduced a reference framework that empowers smart personalised healthcare using PDTs by bringing together existing advanced technologies (i.e., DT, blockchain, and AI). Then, we described some selected use cases, including the mitigation of COVID-19 contagion, COVID-19 survivor follow-up care, personalised COVID-19 medicine, personalised osteoporosis prevention, personalised cancer survivor follow-up care, and personalised nutrition. Finally, we identified further challenges to pave the PDT paradigm toward the smart personalised healthcare industry. Full article
(This article belongs to the Special Issue Applications of Body Worn Sensors and Wearables)
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10 pages, 326 KiB  
Article
Caregiver Willingness to Vaccinate Their Children against COVID-19 after Adult Vaccine Approval
by Ran D. Goldman, Danna Krupik, Samina Ali, Ahmed Mater, Jeanine E. Hall, Jeffrey N. Bone, Graham C. Thompson, Kenneth Yen, Mark A. Griffiths, Adi Klein, Eileen J. Klein, Julie C. Brown, Rakesh D. Mistry, Renana Gelernter and on behalf of the International COVID-19 Parental Attitude Study (COVIPAS) Group
Int. J. Environ. Res. Public Health 2021, 18(19), 10224; https://doi.org/10.3390/ijerph181910224 - 28 Sep 2021
Cited by 46 | Viewed by 5233
Abstract
Vaccines against COVID-19 are likely to be approved for children under 12 years in the near future. Understanding vaccine hesitancy in parents is essential for reaching herd immunity. A cross-sectional survey of caregivers in 12 emergency departments (ED) was undertaken in the U.S., [...] Read more.
Vaccines against COVID-19 are likely to be approved for children under 12 years in the near future. Understanding vaccine hesitancy in parents is essential for reaching herd immunity. A cross-sectional survey of caregivers in 12 emergency departments (ED) was undertaken in the U.S., Canada, and Israel. We compared reported willingness to vaccinate children against COVID-19 with an initial survey and post-adult COVID-19 vaccine approval. Multivariable logistic regression models were performed for all children and for those <12 years. A total of 1728 and 1041 surveys were completed in phases 1 and 2, respectively. Fewer caregivers planned to vaccinate against COVID-19 in phase 2 (64.5% and 59.7%, respectively; p = 0.002). The most significant positive predictor of willingness to vaccinate against COVID-19 was if the child was vaccinated per recommended local schedules. Fewer caregivers plan to vaccinate their children against COVID-19, despite vaccine approval for adults, compared to what was reported at the peak of the pandemic. Older caregivers who fully vaccinated their children were more likely to adopt vaccinating children. This study can inform target strategy design to implement adherence to a vaccination campaign. Full article
(This article belongs to the Special Issue Vaccine Hesitancy and COVID-19)
34 pages, 1563 KiB  
Article
Blockchain-Empowered Digital Twins Collaboration: Smart Transportation Use Case
by Radhya Sahal, Saeed H. Alsamhi, Kenneth N. Brown, Donna O’Shea, Conor McCarthy and Mohsen Guizani
Machines 2021, 9(9), 193; https://doi.org/10.3390/machines9090193 - 9 Sep 2021
Cited by 119 | Viewed by 10208
Abstract
Digital twins (DTs) is a promising technology in the revolution of the industry and essential for Industry 4.0. DTs play a vital role in improving distributed manufacturing, providing up-to-date operational data representation of physical assets, supporting decision-making, and avoiding the potential risks in [...] Read more.
Digital twins (DTs) is a promising technology in the revolution of the industry and essential for Industry 4.0. DTs play a vital role in improving distributed manufacturing, providing up-to-date operational data representation of physical assets, supporting decision-making, and avoiding the potential risks in distributed manufacturing systems. Furthermore, DTs need to collaborate within distributed manufacturing systems to predict the risks and reach consensus-based decision-making. However, DTs collaboration suffers from single failure due to attack and connection in a centralized manner, data interoperability, authentication, and scalability. To overcome the above challenges, we have discussed the major high-level requirements for the DTs collaboration. Then, we have proposed a conceptual framework to fulfill the DTs collaboration requirements by using the combination of blockchain, predictive analysis techniques, and DTs technologies. The proposed framework aims to empower more intelligence DTs based on blockchain technology. In particular, we propose a concrete ledger-based collaborative DTs framework that focuses on real-time operational data analytics and distributed consensus algorithms. Furthermore, we describe how the conceptual framework can be applied using smart transportation system use cases, i.e., smart logistics and railway predictive maintenance. Finally, we highlighted the future direction to guide interested researchers in this interesting area. Full article
(This article belongs to the Special Issue Smart Manufacturing)
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14 pages, 438 KiB  
Article
Enablers and Barriers of Zinc Fortification; Experience from 10 Low- and Middle-Income Countries with Mandatory Large-Scale Food Fortification
by Ann Tarini, Mari S. Manger, Kenneth H. Brown, Mduduzi N. N. Mbuya, Laura A. Rowe, Frederick Grant, Robert E. Black and Christine M. McDonald
Nutrients 2021, 13(6), 2051; https://doi.org/10.3390/nu13062051 - 15 Jun 2021
Cited by 9 | Viewed by 4708
Abstract
Adequate zinc nutrition is important for child growth, neurodevelopment, immune function, and normal pregnancy outcomes. Seventeen percent of the global population is estimated to be at risk for inadequate zinc intake. However, zinc is not included in the fortification standards of several low- [...] Read more.
Adequate zinc nutrition is important for child growth, neurodevelopment, immune function, and normal pregnancy outcomes. Seventeen percent of the global population is estimated to be at risk for inadequate zinc intake. However, zinc is not included in the fortification standards of several low- and middle-income countries with mandatory fortification programs, despite data suggesting a zinc deficiency public health problem. To guide policy decisions, we investigated the factors enabling and impeding the inclusion of zinc as a fortificant by conducting in-depth interviews with 17 key informants from 10 countries. Findings revealed the decision to include zinc was influenced by guidance from international development partners and enabled by the assessment of zinc deficiency, mandatory regional food fortification standards which included zinc, the World Health Organization (WHO) guidelines for zinc fortification, and the low cost of zinc compound commonly used. Barriers included the absence of zinc from regional fortification standards, limited available data on the efficacy and effectiveness of zinc fortification, and the absence of national objectives related to the prevention of zinc deficiency. To promote zinc fortification there is a need to put the prevention of zinc deficiency higher on the international nutrition agenda and to promote large-scale food fortification as a key deficiency mitigation strategy. Full article
(This article belongs to the Special Issue Zinc Supplementation and Fortification: The Unfinished Agenda)
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15 pages, 569 KiB  
Article
Digital Twins Collaboration for Automatic Erratic Operational Data Detection in Industry 4.0
by Radhya Sahal, Saeed H. Alsamhi, John G. Breslin, Kenneth N. Brown and Muhammad Intizar Ali
Appl. Sci. 2021, 11(7), 3186; https://doi.org/10.3390/app11073186 - 2 Apr 2021
Cited by 41 | Viewed by 5629
Abstract
Digital twin (DT) plays a pivotal role in the vision of Industry 4.0. The idea is that the real product and its virtual counterpart are twins that travel a parallel journey from design and development to production and service life. The intelligence that [...] Read more.
Digital twin (DT) plays a pivotal role in the vision of Industry 4.0. The idea is that the real product and its virtual counterpart are twins that travel a parallel journey from design and development to production and service life. The intelligence that comes from DTs’ operational data supports the interactions between the DTs to pave the way for the cyber-physical integration of smart manufacturing. This paper presents a conceptual framework for digital twins collaboration to provide an auto-detection of erratic operational data by utilizing operational data intelligence in the manufacturing systems. The proposed framework provide an interaction mechanism to understand the DT status, interact with other DTs, learn from each other DTs, and share common semantic knowledge. In addition, it can detect the anomalies and understand the overall picture and conditions of the operational environments. Furthermore, the proposed framework is described in the workflow model, which breaks down into four phases: information extraction, change detection, synchronization, and notification. A use case of Energy 4.0 fault diagnosis for wind turbines is described to present the use of the proposed framework and DTs collaboration to identify and diagnose the potential failure, e.g., malfunctioning nodes within the energy industry. Full article
(This article belongs to the Special Issue Information and Communications Technology for Industry 4.0)
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22 pages, 1068 KiB  
Article
Comparing Person-Specific and Independent Models on Subject-Dependent and Independent Human Activity Recognition Performance
by Sebastian Scheurer, Salvatore Tedesco, Brendan O’Flynn and Kenneth N. Brown
Sensors 2020, 20(13), 3647; https://doi.org/10.3390/s20133647 - 29 Jun 2020
Cited by 8 | Viewed by 3486
Abstract
The distinction between subject-dependent and subject-independent performance is ubiquitous in the human activity recognition (HAR) literature. We assess whether HAR models really do achieve better subject-dependent performance than subject-independent performance, whether a model trained with data from many users achieves better subject-independent performance [...] Read more.
The distinction between subject-dependent and subject-independent performance is ubiquitous in the human activity recognition (HAR) literature. We assess whether HAR models really do achieve better subject-dependent performance than subject-independent performance, whether a model trained with data from many users achieves better subject-independent performance than one trained with data from a single person, and whether one trained with data from a single specific target user performs better for that user than one trained with data from many. To those ends, we compare four popular machine learning algorithms’ subject-dependent and subject-independent performances across eight datasets using three different personalisation–generalisation approaches, which we term person-independent models (PIMs), person-specific models (PSMs), and ensembles of PSMs (EPSMs). We further consider three different ways to construct such an ensemble: unweighted, κ -weighted, and baseline-feature-weighted. Our analysis shows that PSMs outperform PIMs by 43.5% in terms of their subject-dependent performances, whereas PIMs outperform PSMs by 55.9% and κ -weighted EPSMs—the best-performing EPSM type—by 16.4% in terms of the subject-independent performance. Full article
(This article belongs to the Special Issue Sensor-Based Activity Recognition and Interaction)
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17 pages, 1142 KiB  
Article
Motion Sensors-Based Machine Learning Approach for the Identification of Anterior Cruciate Ligament Gait Patterns in On-the-Field Activities in Rugby Players
by Salvatore Tedesco, Colum Crowe, Andrew Ryan, Marco Sica, Sebastian Scheurer, Amanda M. Clifford, Kenneth N. Brown and Brendan O’Flynn
Sensors 2020, 20(11), 3029; https://doi.org/10.3390/s20113029 - 27 May 2020
Cited by 35 | Viewed by 5869
Abstract
Anterior cruciate ligament (ACL) injuries are common among athletes. Despite a successful return to sport (RTS) for most of the injured athletes, a significant proportion do not return to competitive levels, and thus RTS post ACL reconstruction still represents a challenge for clinicians. [...] Read more.
Anterior cruciate ligament (ACL) injuries are common among athletes. Despite a successful return to sport (RTS) for most of the injured athletes, a significant proportion do not return to competitive levels, and thus RTS post ACL reconstruction still represents a challenge for clinicians. Wearable sensors, owing to their small size and low cost, can represent an opportunity for the management of athletes on-the-field after RTS by providing guidance to associated clinicians. In particular, this study aims to investigate the ability of a set of inertial sensors worn on the lower-limbs by rugby players involved in a change-of-direction (COD) activity to differentiate between healthy and post-ACL groups via the use of machine learning. Twelve male participants (six healthy and six post-ACL athletes who were deemed to have successfully returned to competitive rugby and tested in the 5–10 year period following the injury) were recruited for the study. Time- and frequency-domain features were extracted from the raw inertial data collected. Several machine learning models were tested, such as k-nearest neighbors, naïve Bayes, support vector machine, gradient boosting tree, multi-layer perceptron, and stacking. Feature selection was implemented in the learning model, and leave-one-subject-out cross-validation (LOSO-CV) was adopted to estimate training and test errors. Results obtained show that it is possible to correctly discriminate between healthy and post-ACL injury subjects with an accuracy of 73.07% (multi-layer perceptron) and sensitivity of 81.8% (gradient boosting). The results of this study demonstrate the feasibility of using body-worn motion sensors and machine learning approaches for the identification of post-ACL gait patterns in athletes performing sport tasks on-the-field even a number of years after the injury occurred. Full article
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25 pages, 2095 KiB  
Article
Using Domain Knowledge for Interpretable and Competitive Multi-Class Human Activity Recognition
by Sebastian Scheurer, Salvatore Tedesco, Kenneth N. Brown and Brendan O’Flynn
Sensors 2020, 20(4), 1208; https://doi.org/10.3390/s20041208 - 22 Feb 2020
Cited by 13 | Viewed by 4061
Abstract
Human activity recognition (HAR) has become an increasingly popular application of machine learning across a range of domains. Typically the HAR task that a machine learning algorithm is trained for requires separating multiple activities such as walking, running, sitting, and falling from each [...] Read more.
Human activity recognition (HAR) has become an increasingly popular application of machine learning across a range of domains. Typically the HAR task that a machine learning algorithm is trained for requires separating multiple activities such as walking, running, sitting, and falling from each other. Despite a large body of work on multi-class HAR, and the well-known fact that the performance on a multi-class problem can be significantly affected by how it is decomposed into a set of binary problems, there has been little research into how the choice of multi-class decomposition method affects the performance of HAR systems. This paper presents the first empirical comparison of multi-class decomposition methods in a HAR context by estimating the performance of five machine learning algorithms when used in their multi-class formulation, with four popular multi-class decomposition methods, five expert hierarchies—nested dichotomies constructed from domain knowledge—or an ensemble of expert hierarchies on a 17-class HAR data-set which consists of features extracted from tri-axial accelerometer and gyroscope signals. We further compare performance on two binary classification problems, each based on the topmost dichotomy of an expert hierarchy. The results show that expert hierarchies can indeed compete with one-vs-all, both on the original multi-class problem and on a more general binary classification problem, such as that induced by an expert hierarchy’s topmost dichotomy. Finally, we show that an ensemble of expert hierarchies performs better than one-vs-all and comparably to one-vs-one, despite being of lower time and space complexity, on the multi-class problem, and outperforms all other multi-class decomposition methods on the two dichotomous problems. Full article
(This article belongs to the Special Issue Inertial Sensors for Activity Recognition and Classification)
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15 pages, 460 KiB  
Article
Prevalence of Inherited Hemoglobin Disorders and Relationships with Anemia and Micronutrient Status among Children in Yaoundé and Douala, Cameroon
by Reina Engle-Stone, Thomas N. Williams, Martin Nankap, Alex Ndjebayi, Marie-Madeleine Gimou, Yannick Oyono, Ann Tarini, Kenneth H. Brown and Ralph Green
Nutrients 2017, 9(7), 693; https://doi.org/10.3390/nu9070693 - 3 Jul 2017
Cited by 8 | Viewed by 5552
Abstract
Information on the etiology of anemia is necessary to design effective anemia control programs. Our objective was to measure the prevalence of inherited hemoglobin disorders (IHD) in a representative sample of children in urban Cameroon, and examine the relationships between IHD and anemia. [...] Read more.
Information on the etiology of anemia is necessary to design effective anemia control programs. Our objective was to measure the prevalence of inherited hemoglobin disorders (IHD) in a representative sample of children in urban Cameroon, and examine the relationships between IHD and anemia. In a cluster survey of children 12–59 months of age (n = 291) in Yaoundé and Douala, we assessed hemoglobin (Hb), malaria infection, and plasma indicators of inflammation and micronutrient status. Hb S was detected by HPLC, and α+thalassemia (3.7 kb deletions) by PCR. Anemia (Hb < 110 g/L), inflammation, and malaria were present in 45%, 46%, and 8% of children. A total of 13.7% of children had HbAS, 1.6% had HbSS, and 30.6% and 3.1% had heterozygous and homozygous α+thalassemia. The prevalence of anemia was greater among HbAS compared to HbAA children (60.3 vs. 42.0%, p = 0.038), although mean Hb concentrations did not differ, p = 0.38). Hb and anemia prevalence did not differ among children with or without single gene deletion α+thalassemia. In multi-variable models, anemia was independently predicted by HbAS, HbSS, malaria, iron deficiency (ID; inflammation-adjusted ferritin <12 µg/L), higher C-reactive protein, lower plasma folate, and younger age. Elevated soluble transferrin receptor concentration (>8.3 mg/L) was associated with younger age, malaria, greater mean reticulocyte counts, inflammation, HbSS genotype, and ID. IHD are prevalent but contribute modestly to anemia among children in urban Cameroon. Full article
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