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Search Results (391)

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Authors = A. A. Machado

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12 pages, 2107 KiB  
Article
Assessment of Diameter Stability in Morse Taper Dental Implants with Different Angulations After Abutment Connection
by Bruno Q. S. Cordeiro, Waldimir R. Carvalho, Edgard M. Fonseca, Aldir N. Machado, Bruna Ghiraldini, Michel A. D. Soares and Priscila L. Casado
Materials 2025, 18(14), 3403; https://doi.org/10.3390/ma18143403 - 21 Jul 2025
Viewed by 302
Abstract
Background: Modification of diameter stability after the abutment retention can result in a decrease in the applied torque or affect the peri-implant tissue, compromising the longevity of the treatment. Therefore, this study aimed to investigate how different connection angles (11.5° and 16.0°) at [...] Read more.
Background: Modification of diameter stability after the abutment retention can result in a decrease in the applied torque or affect the peri-implant tissue, compromising the longevity of the treatment. Therefore, this study aimed to investigate how different connection angles (11.5° and 16.0°) at the implant–abutment interface influence implant diameter stability under the manufacturer’s recommended torque. Methods: Eighty Morse cone-type implant specimens were divided into two groups, with different internal conicity angles: 11.5° (n = 40) and 16.0° (n = 40). Implants varied in diameter (mm): 3.5, 3.8, 4.5, and 5.0. Initial measurements of the implants’ external diameter were carried out. After these measurements, all implants received the abutment installation, and a final measurement of the external implant diameter was performed. Results: Considering the comparative analysis between the final and initial diameters, a non-significant increase in diameter, in the cervical implant region, after torque on the abutment, was observed. The torque applied to the abutments did not produce deformations in the cervical area of Morse taper implants. Conclusions: The torque applied to the abutment screw in implants with a Morse taper connection does not cause deformation in the cervical area of the implant body in implant with 11.5° and 16.0° conicity angles. Full article
(This article belongs to the Section Biomaterials)
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29 pages, 2351 KiB  
Review
Animal Venoms as Potential Antitumor Agents Against Leukemia and Lymphoma
by Geovanna M. Malachias-Pires, Eloise T. M. Filardi, Marcela Romanazzi, Julia Lopes-de-Oliveira, Isabela C. dos Santos, Guilherme Melo-dos-Santos, Ana Beatriz Rossi, Michele Procópio Machado, Thiago A. da Silva and Manuela B. Pucca
Cancers 2025, 17(14), 2331; https://doi.org/10.3390/cancers17142331 - 14 Jul 2025
Viewed by 622
Abstract
Leukemias and lymphomas are hematologic malignancies characterized by complex pathophysiological mechanisms and increasing global incidence. Despite advances in chemotherapy, immunotherapy, and targeted therapies, challenges such as drug resistance and relapse persist, necessitating novel therapeutic strategies. This review explores the cytotoxic potential of venoms [...] Read more.
Leukemias and lymphomas are hematologic malignancies characterized by complex pathophysiological mechanisms and increasing global incidence. Despite advances in chemotherapy, immunotherapy, and targeted therapies, challenges such as drug resistance and relapse persist, necessitating novel therapeutic strategies. This review explores the cytotoxic potential of venoms derived from snakes, bees, and scorpions against leukemia and lymphoma cells. Numerous venom-derived components, such as L-amino acid oxidases (LAAOs), phospholipases A2 (PLA2s), and peptides like melittin, demonstrate selective antitumor activity through mechanisms involving oxidative stress, apoptosis induction, cell cycle arrest, and immunomodulation. These molecules exert their effects via mitochondrial pathways, caspase activation, and inhibition of pro-survival signaling cascades such as NF-κB and PI3K/Akt. Despite promising preclinical results, the clinical translation of these bioactive compounds remains limited due to challenges in standardization, delivery, and safety profiling. This review highlights recent advances in venom research, summarizes key molecular targets, and discusses future directions to harness venom-derived molecules as innovative therapies for hematological cancers. Full article
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18 pages, 2282 KiB  
Article
Quantifying the Unwinding Due to Ram Pressure Stripping in Simulated Galaxies
by Rubens E. G. Machado, Caroline F. O. Grinberg and Elvis A. Mello-Terencio
Galaxies 2025, 13(4), 76; https://doi.org/10.3390/galaxies13040076 - 7 Jul 2025
Viewed by 466
Abstract
Galaxies moving through the gas of the intracluster medium (ICM) experience ram pressure stripping, which can leave behind a gas tail. When a disk galaxy receives the wind edge-on, however, the characteristic signature is not a typical jellyfish tail, but rather an unwinding [...] Read more.
Galaxies moving through the gas of the intracluster medium (ICM) experience ram pressure stripping, which can leave behind a gas tail. When a disk galaxy receives the wind edge-on, however, the characteristic signature is not a typical jellyfish tail, but rather an unwinding of the spiral arms. We aim to quantify such asymmetries both in the gas and in the stellar component of a simulated galaxy. To this end, we simulate a gas-rich star-forming spiral galaxy moving through a self-consistent ICM gas. The amplitude and location of the asymmetries were measured via Fourier decomposition. We found that the asymmetry is much more evident in the gas component, but it is also measurable in the stars. The amplitude tends to increase with time and the asymmetry radius migrates inwards. We found that, when considering the gas, the spiral arms extend much further and are more unwound than the corresponding stellar arms. Characterizing the unwinding via simulations should help inform the observational criteria used to classify ram pressure stripped galaxies, as opposed to asymmetries induced by other mechanisms. Full article
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25 pages, 4098 KiB  
Article
Exploring the Genetic Networks of HLB Tolerance in Citrus: Insights Across Species and Tissues
by Rodrigo Machado, Sebastián Moschen, Gabriela Conti, Sergio A. González, Máximo Rivarola, Claudio Gómez, Horacio Esteban Hopp and Paula Fernández
Plants 2025, 14(12), 1792; https://doi.org/10.3390/plants14121792 - 11 Jun 2025
Viewed by 741
Abstract
Huanglongbing (HLB), caused mainly by Candidatus Liberibacter asiaticus (CLas), is a devastating disease threatening citrus production worldwide, leading to leaf mottling, fruit deformation, and significant yield losses. This study generated a comprehensive co-expression network analysis using RNA-seq data from 17 public datasets. Weighted [...] Read more.
Huanglongbing (HLB), caused mainly by Candidatus Liberibacter asiaticus (CLas), is a devastating disease threatening citrus production worldwide, leading to leaf mottling, fruit deformation, and significant yield losses. This study generated a comprehensive co-expression network analysis using RNA-seq data from 17 public datasets. Weighted gene co-expression network analysis (WGCNA) was applied to identify gene modules associated with citrus species, tissue types, and days post-infection (DPIs). These modules revealed significant enrichment in biological pathways related to stress responses, metabolic reprograming, ribosomal protein synthesis, chloroplast and plastid function, cellular architecture, and intracellular transport. The results offer a molecular framework for understanding HLB pathogenesis and host response. By elucidating module-specific functions and their correlation with species- and tissue-specific responses, this study provides a robust foundation for identifying key genetic targets. These insights facilitate breeding programs focused on developing HLB-tolerant citrus cultivars, contributing to the long-term sustainability and resilience of global citrus production. Full article
(This article belongs to the Special Issue Deciphering Plant Molecular Data Using Computational Methods)
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25 pages, 3666 KiB  
Article
Validation of Core and Whole-Genome Multi-Locus Sequence Typing Schemes for Shiga-Toxin-Producing E. coli (STEC) Outbreak Detection in a National Surveillance Network, PulseNet 2.0, USA
by Molly M. Leeper, Morgan N. Schroeder, Taylor Griswold, Mohit Thakur, Krittika Krishnan, Lee S. Katz, Kelley B. Hise, Grant M. Williams, Steven G. Stroika, Sung B. Im, Rebecca L. Lindsey, Peyton A. Smith, Jasmine Huffman, Alyssa Kelley, Sara Cleland, Alan J. Collins, Shruti Gautam, Eishita Tyagi, Subin Park, João A. Carriço, Miguel P. Machado, Hannes Pouseele, Dolf Michielsen and Heather A. Carletonadd Show full author list remove Hide full author list
Microorganisms 2025, 13(6), 1310; https://doi.org/10.3390/microorganisms13061310 - 4 Jun 2025
Viewed by 1225
Abstract
Shiga-toxin-producing E. coli (STEC) is a leading causing of bacterial foodborne and zoonotic illnesses in the USA. Whole-genome sequencing (WGS) is a powerful tool used in public health and microbiology for the detection, surveillance, and outbreak investigation of STEC. In this study, we [...] Read more.
Shiga-toxin-producing E. coli (STEC) is a leading causing of bacterial foodborne and zoonotic illnesses in the USA. Whole-genome sequencing (WGS) is a powerful tool used in public health and microbiology for the detection, surveillance, and outbreak investigation of STEC. In this study, we applied three WGS-based subtyping methods, high quality single-nucleotide polymorphism (hqSNP) analysis, whole genome multi-locus sequence typing using chromosome-associated loci [wgMLST (chrom)], and core genome multi-locus sequence typing (cgMLST), to isolate sequences from 11 STEC outbreaks. For each outbreak, we evaluated the concordance between subtyping methods using pairwise genomic differences (number of SNPs or alleles), linear regression models, and tanglegrams. Pairwise genomic differences were highly concordant between methods for all but one outbreak, which was associated with international travel. The slopes of the regressions for hqSNP vs. allele differences were 0.432 (cgMLST) and 0.966 wgMLST (chrom); the slope was 1.914 for cgMLST vs. wgMLST (chrom) differences. Tanglegrams comprised of outbreak and sporadic sequences showed moderate clustering concordance between methods, where Baker’s Gamma Indices (BGIs) ranged between 0.35 and 0.99 and Cophenetic Correlation Coefficients (CCCs) were ≥0.88 across all outbreaks. The K-means analysis using the Silhouette method showed the clear separation of outbreak groups with average silhouette widths ≥0.87 across all methods. This study validates the use of cgMLST for the national surveillance of STEC illness clusters using the PulseNet 2.0 system and demonstrates that hqSNP or wgMLST can be used for further resolution. Full article
(This article belongs to the Special Issue The Molecular Epidemiology of Infectious Diseases)
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17 pages, 2295 KiB  
Article
The Prevalence of Antimicrobial Resistance Genes in the Environments of Small Ruminant Farms from Central Portugal
by Jaqueline T. Bento, Sara Gomes-Gonçalves, Rita Cruz, Fernando Esteves, Alexandra Lameira Baptista, Maria Aires Pereira, Pedro Caseiro, Pedro Carreira, Luís Figueira, João R. Mesquita, Adriano A. Bordalo and Ana Machado
Antibiotics 2025, 14(6), 576; https://doi.org/10.3390/antibiotics14060576 - 4 Jun 2025
Viewed by 565
Abstract
Background: Antimicrobial resistance is a pressing global concern affecting both human and animal health, with environment playing a key role in the dissemination of resistance determinants. This study aimed to investigate the presence of antimicrobial resistance genes (ARGs) associated with tetracyclines, β-lactams, macrolides, [...] Read more.
Background: Antimicrobial resistance is a pressing global concern affecting both human and animal health, with environment playing a key role in the dissemination of resistance determinants. This study aimed to investigate the presence of antimicrobial resistance genes (ARGs) associated with tetracyclines, β-lactams, macrolides, and sulfonamides in environmental matrices collected from 65 sheep and goat farms in central Portugal. Methods: Environmental samples, including water, soil, pasture, and bedding, were analyzed through qPCR for the detection of clinically relevant ARGs. Results: ARGs were detected in 83% of the samples, with over half exhibiting genes from three or more antibiotic classes, suggesting potential multidrug resistance. β-lactamase genes were the most prevalent, followed by those conferring resistance to tetracycline and sulfonamide resistance, while macrolide resistance genes were least frequent. The distribution of ARGs varied by farm type, host species, and municipality. Conclusions: These findings suggest that small ruminant farms serve as important reservoirs for ARGs. The results underscore the need for systematic surveillance and further research into the ecological and genetic factors driving ARG persistence and dissemination in extensive livestock systems, including proper waste management strategies to limit the spread and persistence of antibiotic resistance and mitigate broader public health risks. Full article
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24 pages, 3996 KiB  
Review
Visualization of the Research Panorama of Decision-Making in Soccer: Bibliometric Analysis with VOSviewer and Review of the Most Cited Studies of the Last 15 Years (2010–2024)
by Juan David Paucar Uribe, Boryi A. Becerra-Patiño, Jorge Olivares-Arancibia, Rodrigo Yáñez-Sepúlveda, Aldo Vasquez-Bonilla, Daniel Rojas-Valverde, José Francisco López-Gil and Guilherme Machado
Sports 2025, 13(6), 177; https://doi.org/10.3390/sports13060177 - 3 Jun 2025
Viewed by 1874
Abstract
Background/Objectives: Various studies have investigated the importance of perceptual–cognitive skills in decision-making and the expert performance of athletes. However, bibliometric study has yet to identify research trends on this topic. The objective of this study was to perform a bibliometric review to identify [...] Read more.
Background/Objectives: Various studies have investigated the importance of perceptual–cognitive skills in decision-making and the expert performance of athletes. However, bibliometric study has yet to identify research trends on this topic. The objective of this study was to perform a bibliometric review to identify the research trends in the study of soccer decision-making. Method. A total of 172 studies were included in the databases. Results. The year 2021 was the year with the highest number of published studies (n = 23), and 2016 was the year with the highest number of citations (n = 692). The average number of citations per document was 19.79. The concepts that have the greatest occurrence in the investigations are performance (n = 68), decision-making (n = 54), expertise (n = 32), skill (n = 23), and anticipation (n = 22). The journals with the highest number of published documents are the Journal of Sport Sciences (10 documents and 437 citations) and PLoS One (11 documents and 349 citations). The countries with the highest number of published documents and citations are England (n = 46 documents and 996 citations), Germany (n = 32 documents and 749 citations), and Spain (n = 38 documents and 597 citations). German Sport University Cologne is the organization that has the most publications and citations (n = 19 and 531). Conclusions. Existing knowledge production on decision-making in soccer has a preference for the study of two major categories: one related to the analysis of the factors associated with perceptual–cognitive skills, mental fatigue, anticipation, creativity, and memory, whereas the second is more related to the study that has decision-making in the manifestations of specific game performance, between experts and novices, in the precision of technical actions, such as the pass, as well as in a methodology for the selection of athletes. Full article
(This article belongs to the Special Issue Cutting-Edge Research on Physical Fitness Profile in Soccer Players)
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24 pages, 799 KiB  
Perspective
Empowering Pharmacists in Type 2 Diabetes Care: Opportunities for Prevention, Counseling, and Therapeutic Optimization
by Sarah Uddin, Mathias Sanchez Machado, Bayan Alshahrouri, Jose I. Echeverri, Mario C. Rico, Ajay D. Rao, Charles Ruchalski and Carlos A. Barrero
J. Clin. Med. 2025, 14(11), 3822; https://doi.org/10.3390/jcm14113822 - 29 May 2025
Viewed by 1197
Abstract
Diabetes is a growing chronic disease with complications that impose a significant burden on healthcare systems worldwide. Pharmacists are readily accessible for diabetes management beyond simply dispensing medications. Consequently, they are involved in disease prevention and detection, therapy management, and patient monitoring. However, [...] Read more.
Diabetes is a growing chronic disease with complications that impose a significant burden on healthcare systems worldwide. Pharmacists are readily accessible for diabetes management beyond simply dispensing medications. Consequently, they are involved in disease prevention and detection, therapy management, and patient monitoring. However, with the current escalating impact of diabetes, pharmacists must upgrade their strategies by integrating guidelines from sources like the American Diabetes Association (ADA) 2024 with pharmacy expertise. This perspective serves as a guide for pharmacists, identifying key foundations involved in diabetes management, highlighting five crucial steps for optimal disease control, ranging from prevention strategies to pharmacist-led counseling interventions. We employed PubMed, CDC, WHO guidelines, and key reference texts. Searches were performed using combinations of terms such as “pharmacist”, “type 2 diabetes”, “diabetes prevention”, “pharmacist intervention”, and “diabetes management”, covering publications from January 2010 to March 2025. Studies were included if they focused on pharmacist-led prevention, intervention, or management strategies related to type 2 diabetes (T2D) and were published in English. Studies focusing exclusively on type 1 diabetes were excluded. Generative artificial intelligence was employed to order and structure information as described in the acknowledgments. Conflicting evidence was resolved by giving relevance to recent systematic reviews, randomized trials, and major guidelines. Additional insights were gained through consultations with PharmD professionals experienced in diabetes care. Evidence from selected studies suggests that pharmacist-led care models may enhance and promote the early detection of T2D, improve therapy adherence, enhance glycemic control, and increase overall treatment efficiency. This work suggests that pharmacists must play a key role in diagnosing, preventing, managing, and mitigating the consequences associated with T2D. They must contribute to early treatments with appropriate training and involvement to improve therapeutic outcomes and reduce diabetes-related complications. Full article
(This article belongs to the Section Pharmacology)
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19 pages, 3519 KiB  
Review
Plant-Derived Lapachol Analogs as Selective Metalloprotease Inhibitors Against Bothrops Venom: A Review
by Paulo A. Melo, Pâmella Dourila Nogueira-Souza, Mayara Amorim Romanelli, Marcelo A. Strauch, Marcelo de Oliveira Cesar, Marcos Monteiro-Machado, Fernando Chagas Patrão-Neto, Sabrina R. Gonsalez, Nilton Ghiotti Siqueira, Edgar Schaeffer, Paulo R. R. Costa and Alcides J. M. da Silva
Int. J. Mol. Sci. 2025, 26(9), 3950; https://doi.org/10.3390/ijms26093950 - 22 Apr 2025
Viewed by 665
Abstract
Plant compounds that inhibit snake venom activities are relevant and can provide active molecules to counteract snake venom effects. Numerous studies on snake viperid venoms found that metalloproteinases play a significant role in the pathophysiology of hemorrhage that occurs on envenomation. Preclinical studies [...] Read more.
Plant compounds that inhibit snake venom activities are relevant and can provide active molecules to counteract snake venom effects. Numerous studies on snake viperid venoms found that metalloproteinases play a significant role in the pathophysiology of hemorrhage that occurs on envenomation. Preclinical studies using vitro and in vivo protocols investigated natural compounds and viperid snake venoms, evaluating the enzymatic, procoagulant, hemorrhagic, edematogenic, myotoxic, and lethal activities. Many studies focused on Bothrops venoms and ascribed that angiorrhexis and hemorrhage resulted from the metalloproteinase action on collagen in the basal lamina. This effect resulted in a combined action with phospholipase A2 and hyaluronidase, inducing hemorrhage, edema, and necrosis. Due to the lack of efficient antivenoms in remote areas, traditional native plant treatments remain common, especially in the Amazon. Our group studied plant extracts, isolated compounds, and lapachol synthetic derivative analogs with selective inhibition for Bothrops venom proteolytic and hemorrhagic activity and devoid of phospholipase activity. We highlight those new synthetic naphthoquinones which inhibit snake venom metalloproteinases and that are devoid of other venom enzyme inhibition. This review shows the potential use of snake venom effects, mainly Bothrops venom metalloproteinase activity, as a tool to identify and develop new active molecules against hemorrhagic effects. Full article
(This article belongs to the Special Issue Molecular Mechanisms of Animal Toxins, Venoms and Antivenoms 2.0)
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21 pages, 5794 KiB  
Article
Coffee Biotransformation in Volcanic Process: A Chemical and Sensory Analysis
by Renata A. R. Rocha, Lívia C. F. Silva, Marcelo A. D. da Cruz, Luiza M. A. B. Cardoso, Arlley de B. M. Sousa, Laila Alonso, Marcela V. C. Machado, Gisele X. R. Costa, Laurence R. Amaral, Pedro L. L. Bertarini, Matheus S. Gomes and Líbia D. Santos
Foods 2025, 14(8), 1368; https://doi.org/10.3390/foods14081368 - 16 Apr 2025
Cited by 1 | Viewed by 685
Abstract
Volcanic fermentation is an innovative technique in post-harvest coffee processing that involves forming conical mounds, called “volcanoes”, to create specific biotransformation conditions. This study investigates the impact of different volcano fermentation methods on the chemical composition and sensory attributes of coffee. Four methods [...] Read more.
Volcanic fermentation is an innovative technique in post-harvest coffee processing that involves forming conical mounds, called “volcanoes”, to create specific biotransformation conditions. This study investigates the impact of different volcano fermentation methods on the chemical composition and sensory attributes of coffee. Four methods were evaluated: asphalt patio (E1), on pallets (E2), in steel containers under the sun (E3), and in steel containers in the shade (E4). The chemical composition was analyzed in terms of sugars (sucrose, glucose, fructose), organic acids (citric, malic, succinic, lactic, acetic) and alcohols (glycerol, ethanol). In addition, color differences (ΔE) and sensory analysis of the fermented coffees were evaluated. The results of this study reveal that volcanic fermentation produces high-quality specialty coffees, but with divergent profiles of acids and alcohols, thus influencing the sensory characteristics of the resulting beverage. However, the different methods of volcanic fermentation did not significantly affect pH and soluble solids, indicating that the microbiota developed an efficient and consistent fermentation regardless of the solar exposure conditions. The most frequently mentioned sensory descriptors were chocolate, citrus fruits, honey/molasses, caramel, floral, and brown sugar. These findings highlight the significant influence of the volcanic fermentation method on the chemical and sensory quality of coffee fermented. Full article
(This article belongs to the Section Drinks and Liquid Nutrition)
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13 pages, 1411 KiB  
Article
Enzyme-Linked Immunosorbent Assay (ELISA) Development for Equine Serum Amyloid A (SAA) Determination Using Recombinant Proteins
by Pollyanna C. Souto, Marcus R. Santos, Andrés M. Ortega Orozco, Lucas D. Bento, Camilo J. Ramirez-Lopez, Fabrícia M. Girardi, Júlia C. Assis Machado, Leandro L. de Oliveira and Leandro A. da Fonseca
Methods Protoc. 2025, 8(2), 37; https://doi.org/10.3390/mps8020037 - 7 Apr 2025
Viewed by 812
Abstract
We aimed to develop a species-specific ELISA for qualitatively and quantitatively determining serum amyloid A (SAA) in horses. Current methods for measuring SAA in horses utilize ELISA or immunoturbidimetric tests designed for human SAA, which are not specific to horses. Mice and rabbits [...] Read more.
We aimed to develop a species-specific ELISA for qualitatively and quantitatively determining serum amyloid A (SAA) in horses. Current methods for measuring SAA in horses utilize ELISA or immunoturbidimetric tests designed for human SAA, which are not specific to horses. Mice and rabbits were used to generate polyclonal antibodies against equine SAA. The study examined serum samples from 32 horses with acute inflammatory disease (SG) and 25 clinically healthy horses. Furthermore, the SAAeq kinetics were observed in three horses from the SG group at three different timepoints. The SAA-ELISA established a cut-off at 0.06 OD492nm, where values equal to or higher than this were deemed positive, while values below it was considered negative. The test exhibited a sensitivity of 94% and specificity of 92%, resulting in an overall accuracy of 93%. The positive and negative predictive values were 94% and 92%, respectively. Coefficients of variation for inter- and intra-assay were 6.1% and 7.46% for SG and 9.6% and 9.63% for the control group (CG). The detection limit was determined to be 0.067. The SAA-ELISA proved its worth by demonstrating satisfactory performance, paving the way for the development of automated quantitative tests and species-specific semi-quantitative tests. This paves the way for their application in practical field settings. Full article
(This article belongs to the Section Molecular and Cellular Biology)
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17 pages, 3401 KiB  
Article
Induced Types 2 and 3 Deiodinase in Non-Thyroidal Illness Syndrome and the Implications to Critical Illness-Induced Myopathy—A Prospective Cohort Study
by André Cardoso Braun, Thaliane Carvalho Oliveira, Ludmilla C. D. Thomazini, Gustavo Argenti, Bruno Jaskulski Kotzian, Valentina Machado, João Henrique M. Conte, Carolina Zanfir, Amanda C. A. Souto, Bruna Ulian, Josi Vidart and Simone Magagnin Wajner
Int. J. Mol. Sci. 2025, 26(6), 2410; https://doi.org/10.3390/ijms26062410 - 7 Mar 2025
Viewed by 692
Abstract
Loss of muscle mass and strength is a common condition associated with adverse outcomes in critically ill patients. Here, we determined the correlation between non-thyroidal illness (NTIS) and molecular alterations in the muscle of critically ill individuals. We evaluated deiodinase expression, intramuscular triiodothyronine [...] Read more.
Loss of muscle mass and strength is a common condition associated with adverse outcomes in critically ill patients. Here, we determined the correlation between non-thyroidal illness (NTIS) and molecular alterations in the muscle of critically ill individuals. We evaluated deiodinase expression, intramuscular triiodothyronine (T3) levels, and mitochondria and sarcoplasmic reticulum components. The cellular colocalization of the enzymes and its influence on myocytes and genes regulated by T3 were shown, including those of mitochondria. A prospective cohort of 96 patients. Blood and muscular samples were collected on admission to the intensive care unit (ICU), as well as clinical data and ultrasonographic measurements. Patients with NTIS showed increased oxidative stress markers associated with critical illness in muscle biopsy, such as carbonyl content and low sulfhydryl and GSH. The distribution pattern of deiodinases in muscle and its biochemical properties showed significant pathophysiological linkage between NTIS and muscle loss, as type 3-deiodinase (D3) was highly expressed in stem cells, preventing their differentiation in mature myocytes. Despite the high type 2-deiodinase (D2) expression in muscle tissue in the acute phase of critical illness, T3 was unmeasurable in the samples. In this scenario, we also demonstrated impaired expression of glucose transporters GLUT4, IRS1, and 2, which are involved in muscle illness. Here, we provide evidence that altered thyroid hormone metabolism contributes to stem cell dysfunction and further explain the mechanisms underlying critical illness-induced myopathy. Full article
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10 pages, 1294 KiB  
Communication
Towards a Survival-Based Cellular Assay for the Selection of Protease Inhibitors in Escherichia coli
by William Y. Oyadomari, Elizangela A. Carvalho, Gabriel E. Machado, Ana Júlia O. Machado, Gabriel S. Santos, Marcelo Marcondes and Vitor Oliveira
BioTech 2025, 14(1), 16; https://doi.org/10.3390/biotech14010016 - 7 Mar 2025
Viewed by 729
Abstract
We describe a method tailored to the in-cell selection of protease inhibitors. In this method, a target protease is co-expressed with a selective substrate, the product of which kills host cells. Therefore, the method can be applied to identify potential inhibitors based on [...] Read more.
We describe a method tailored to the in-cell selection of protease inhibitors. In this method, a target protease is co-expressed with a selective substrate, the product of which kills host cells. Therefore, the method can be applied to identify potential inhibitors based on cell host survival when inhibition of the target protease occurs. The TEV protease was chosen for this proof-of-concept experiment. The genetically encoded selective substrate is a single polypeptide chain composed of three parts: (1) a ccdB protein, which can cause host cell death when it accumulates inside the cell; (2) a protease cleavage sequence that can be changed according to the target protease, in this case the TEV substrate ENLYFQ↓G (↓-predicted cleavage site); and (3) the ssrA sequence (AANDENYALAA), which drives the polypeptide to degradation by the ClpX/ClpP complex inside host E. coli cells. In our experiment, co-expression of the active TEV protease and this selective substrate (ccdB-ENLYFQG-ssrA) caused the death of a significant host cell population, while control assays with an inactive mutant TEV Asp81Asn did not. Details of the methodology used are given, providing the basis for the application of similar systems for other proteases of interest. Full article
(This article belongs to the Section Medical Biotechnology)
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27 pages, 4808 KiB  
Article
Automatic Correction System for Learning Activities in Remote-Access Laboratories in the Mechatronics Area
by Guido S. Machado, Thiago R. M. Salgado, Florindo A. C. Ayres, Iury V. Bessa, Renan L. P. Medeiros and Vicente F. Lucena
Appl. Sci. 2025, 15(5), 2574; https://doi.org/10.3390/app15052574 - 27 Feb 2025
Viewed by 874
Abstract
In recent years, the educational field has evolved rapidly owing to the integration of several technologies, especially experiments in remote laboratories in the engineering area. Therefore, this article addresses the development of an innovation system for automatically correcting experiments in remote laboratories in [...] Read more.
In recent years, the educational field has evolved rapidly owing to the integration of several technologies, especially experiments in remote laboratories in the engineering area. Therefore, this article addresses the development of an innovation system for automatically correcting experiments in remote laboratories in mechatronics using digital twins, convolutional neural networks (CNNs), and generative artificial intelligence technologies. This system was designed to overcome the limitations of physical laboratories and teacher’s availability and assist in learning, enabling automatic acquisitions at any time. The digital twin captures data from the teacher’s and student’s experiments, allowing accurate comparisons to identify successes and errors. The application of CNNs serves to validate the results of the experiments through image analysis, whereas generative AI helps to identify patterns. The system was evaluated in a didactic plant, effectively correcting experiments with digital inputs and outputs. In addition, it provides students with detailed feedback on their performance, including specific errors and suggestions for improvement. With a three-layer architecture, i.e., experiments, didactics, and management, the system efficiently processes data from teachers and students, contributing to correcting experiments and optimizing teaching in remote environments. Full article
(This article belongs to the Special Issue Applications of Digital Technology and AI in Educational Settings)
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29 pages, 6143 KiB  
Article
Sustainable Utilization of Coffee Pulp, a By-Product of Coffee Production: Effects on Metabolic Syndrome in Fructose-Fed Rats
by Nelson Andrade, Ilda Rodrigues, Francisca Carmo, Gabriela Campanher, Isabella Bracchi, Joanne Lopes, Emília Patrício, João T. Guimarães, Juliana A. Barreto-Peixoto, Anabela S. G. Costa, Liliana Espírito Santo, Marlene Machado, Thiago F. Soares, Susana Machado, Maria Beatriz P. P. Oliveira, Rita C. Alves, Fátima Martel and Cláudia Silva
Antioxidants 2025, 14(3), 266; https://doi.org/10.3390/antiox14030266 - 25 Feb 2025
Cited by 1 | Viewed by 944
Abstract
Metabolic syndrome (MetS) is a cluster of metabolic abnormalities that include insulin resistance, impaired glucose tolerance, dyslipidemia, hypertension, and abdominal obesity. Coffee production generates large quantities of waste products, which pose a serious threat to the environment. However, coffee by-products, such as coffee [...] Read more.
Metabolic syndrome (MetS) is a cluster of metabolic abnormalities that include insulin resistance, impaired glucose tolerance, dyslipidemia, hypertension, and abdominal obesity. Coffee production generates large quantities of waste products, which pose a serious threat to the environment. However, coffee by-products, such as coffee pulp (CP), possess an undeniable wealth of bioactive components. Based on this, we investigated whether a 10-week dietary intervention with 250 mg/kg/d of CP could prevent or ameliorate MetS in high-fructose-fed rats. Consumption of CP by rats fed a high-fructose diet reduced body weight gain, lowered systolic blood pressure (SBP), fasting plasma glucose and insulin levels, and improved insulin resistance compared to rats fed a high-fructose diet alone. At the hepatic level, CP attenuated the increase in lipid storage, reduced lipid peroxidation, and improved glutathione levels when combined with a high-fructose diet. CP also affected the expression of key genes related to glucose and lipid metabolism in hepatic and adipose tissues, in rats fed a fructose-rich diet. This study demonstrates that CP ameliorates several consequences of high-fructose-induced MetS in the rat (weight gain, hypertension, glucose intolerance, insulin resistance, changes in liver, and adipose tissue function). Hence, our data provide evidence that CP consumption in the context of a high-fructose diet can be used to improve MetS management. Full article
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