RETRACTED: PTEN Deficiency Induced by Extracellular Vesicle miRNAs from Clonorchis sinensis Potentiates Cholangiocarcinoma Development by Inhibiting Ferroptosis
Abstract
1. Introduction
2. Results
2.1. Extraction and Identification of CS-EVs
2.2. Identification and Functional Enrichment Analysis of miRNAs in CS-EVs
2.3. CS-EVs Could Be Taken Up by Cholangiocarcinoma Cells
2.4. csi-miR-96-5p Directly Targeted PTEN
2.5. Effect of csi-miR-96-5p/PTEN Axis on Cholangiocarcinoma
2.6. The Ferroptosis Mechanism of csi-miR-96-5p/PTEN Axis
3. Discussion
4. Materials and Methods
4.1. Animals
4.2. CS-EV Extraction and Identification
4.3. High-Throughput Sequencing and Functional Enrichment Analysis of miRNAs in CS-EVs
4.4. Cell Culture and Transfection
4.5. Dual Luciferase Assay
4.6. Quantitative Analysis of mRNAs and miRNAs by qPCR
4.7. Western Blot
4.8. Construction of Erastin-Induced Ferroptosis CCA Cell Model
4.9. Cell Proliferation Assay by CCK-8
4.10. Cell Proliferation Assay by Subcutaneous Tumor Model
4.11. Cell Migration Assay by Transwell
4.12. MDA, Fe2+ and GSH Assay
4.13. Statistical Analysis
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Jiang, T.Y.; Shi, Y.Y.; Cui, X.W.; Pan, Y.F.; Lin, Y.K.; Feng, X.F.; Ding, Z.W.; Yang, C.; Tan, Y.X.; Dong, L.W.; et al. PTEN Deficiency Facilitates Exosome Secretion and Metastasis in Cholangiocarcinoma by Impairing TFEB-mediated Lysosome Biogenesis. Gastroenterology 2023, 164, 424–438. [Google Scholar] [CrossRef] [PubMed]
- Vidotto, T.; Melo, C.M.; Lautert-Dutra, W.; Chaves, L.P.; Reis, R.B.; Squire, J.A. Pan-cancer genomic analysis shows hemizygous PTEN loss tumors are associated with immune evasion and poor outcome. Sci. Rep. 2023, 13, 5049. [Google Scholar] [CrossRef] [PubMed]
- Alvarez-Garcia, V.; Tawil, Y.; Wise, H.M.; Leslie, N.R. Mechanisms of PTEN loss in cancer: It’s all about diversity. Semin. Cancer Biol. 2019, 59, 66–79. [Google Scholar] [CrossRef] [PubMed]
- Glaviano, A.; Foo, A.; Lam, H.Y.; Yap, K.; Jacot, W.; Jones, R.H.; Eng, H.; Nair, M.G.; Makvandi, P.; Geoerger, B.; et al. PI3K/AKT/mTOR signaling transduction pathway and targeted therapies in cancer. Mol. Cancer 2023, 22, 138. [Google Scholar] [CrossRef] [PubMed]
- Kimbrough-Allah, M.N.; Millena, A.C.; Khan, S.A. Differential role of PTEN in transforming growth factor beta (TGF-beta) effects on proliferation and migration in prostate cancer cells. Prostate 2018, 78, 377–389. [Google Scholar] [CrossRef] [PubMed]
- Wu, D.; Huang, C.; Guan, K. Mechanistic and therapeutic perspectives of miRNA-PTEN signaling axis in cancer therapy resistance. Biochem. Pharmacol. 2024, 226, 116406. [Google Scholar] [CrossRef]
- Wu, H.H.; Leng, S.; Sergi, C.; Leng, R. How MicroRNAs Command the Battle against Cancer. Int. J. Mol. Sci. 2024, 25, 5865. [Google Scholar] [CrossRef]
- Park, S.E.; Kim, W.; Hong, J.Y.; Kang, D.; Park, S.; Suh, J.; You, D.; Park, Y.Y.; Suh, N.; Hwang, J.J.; et al. miR-96-5p targets PTEN to mediate sunitinib resistance in clear cell renal cell carcinoma. Sci. Rep. 2022, 12, 3537. [Google Scholar] [CrossRef]
- Vahabi, M.; Pulito, C.; Sacconi, A.; Donzelli, S.; D’Andrea, M.; Manciocco, V.; Pellini, R.; Paci, P.; Sanguineti, G.; Strigari, L.; et al. miR-96-5p targets PTEN expression affecting radio-chemosensitivity of HNSCC cells. J. Exp. Clin. Cancer Res. 2019, 38, 141. [Google Scholar] [CrossRef]
- Choi, D.; Lim, J.H.; Lee, K.T.; Lee, J.K.; Choi, S.H.; Heo, J.S.; Jang, K.T.; Lee, N.Y.; Kim, S.; Hong, S.T. Cholangiocarcinoma and Clonorchis sinensis infection: A case-control study in Korea. J. Hepatol. 2006, 44, 1066–1073. [Google Scholar] [CrossRef]
- Bouvard, V.; Baan, R.; Straif, K.; Grosse, Y.; Secretan, B.; El Ghissassi, F.; Benbrahim-Tallaa, L.; Guha, N.; Freeman, C.; Galichet, L.; et al. A review of human carcinogens—Part B: Biological agents. Lancet Oncol. 2009, 10, 321–322. [Google Scholar] [CrossRef] [PubMed]
- Xu, L.; Zhang, Y.; Lin, Z.; Deng, X.; Ren, X.; Huang, M.; Li, S.; Zhou, Q.; Fang, F.; Yang, Q.; et al. FASN-mediated fatty acid biosynthesis remodels immune environment in Clonorchis sinensis infection-related intrahepatic cholangiocarcinoma. J. Hepatol. 2024, 81, 265–277. [Google Scholar] [CrossRef] [PubMed]
- Chu, Y.; Shi, D.; Wang, N.; Ren, L.; Liu, N.; Hu, F.; Meng, W.; Hong, S.J.; Bai, X. Clonorchis sinensis legumain promotes migration and invasion of cholangiocarcinoma cells via regulating tumor-related molecules. Parasites Vectors 2023, 16, 71. [Google Scholar] [CrossRef] [PubMed]
- Wang, C.; Lei, H.; Tian, Y.; Shang, M.; Wu, Y.; Li, Y.; Zhao, L.; Shi, M.; Tang, X.; Chen, T.; et al. Clonorchis sinensis granulin: Identification, immunolocalization, and function in promoting the metastasis of cholangiocarcinoma and hepatocellular carcinoma. Parasites Vectors 2017, 10, 262. [Google Scholar] [CrossRef] [PubMed]
- Pak, J.H.; Kim, I.K.; Kim, S.M.; Maeng, S.; Song, K.J.; Na, B.K.; Kim, T.S. Induction of cancer-related microRNA expression profiling using excretory-secretory products of Clonorchis sinensis. Parasitol. Res. 2014, 113, 4447–4455. [Google Scholar] [CrossRef]
- Chaiyadet, S.; Sotillo, J.; Smout, M.; Cantacessi, C.; Jones, M.K.; Johnson, M.S.; Turnbull, L.; Whitchurch, C.B.; Potriquet, J.; Laohaviroj, M.; et al. Carcinogenic Liver Fluke Secretes Extracellular Vesicles That Promote Cholangiocytes to Adopt a Tumorigenic Phenotype. J. Infect. Dis. 2015, 212, 1636–1645. [Google Scholar] [CrossRef]
- Yan, C.; Zhou, Q.Y.; Wu, J.; Xu, N.; Du, Y.; Li, J.; Liu, J.X.; Koda, S.; Zhang, B.B.; Yu, Q.; et al. Csi-let-7a-5p delivered by extracellular vesicles from a liver fluke activates M1-like macrophages and exacerbates biliary injuries. Proc. Natl. Acad. Sci. USA 2021, 118, e2102206118. [Google Scholar] [CrossRef]
- Zhang, X.; Duan, S.; Li, X.; Ding, J.; Zuo, L.; Sun, B.; Zhang, X.; Jiang, X.; Gao, Y.; Hu, X.; et al. Differences in the secretory exosomes of Clonorchis sinensis adults at different incubation times. Acta Trop. 2022, 234, 106604. [Google Scholar] [CrossRef]
- Ovchinnikov, V.Y.; Kashina, E.V.; Mordvinov, V.A.; Fromm, B. EV-transported microRNAs of Schistosoma mansoni and Fasciola hepatica: Potential targets in definitive hosts. Infect. Genet. Evol. 2020, 85, 104528. [Google Scholar] [CrossRef]
- Fromm, B.; Ovchinnikov, V.; Hoye, E.; Bernal, D.; Hackenberg, M.; Marcilla, A. On the presence and immunoregulatory functions of extracellular microRNAs in the trematode Fasciola hepatica. Parasite Immunol. 2017, 39, e12399. [Google Scholar] [CrossRef]
- Yothaisong, S.; Thanee, M.; Namwat, N.; Yongvanit, P.; Boonmars, T.; Puapairoj, A.; Loilome, W. Opisthorchis viverrini infection activates the PI3K/AKT/PTEN and Wnt/beta-catenin signaling pathways in a Cholangiocarcinogenesis model. Asian Pac. J. Cancer Prev. 2014, 15, 10463–10468. [Google Scholar] [CrossRef] [PubMed]
- Dixon, S.J.; Lemberg, K.M.; Lamprecht, M.R.; Skouta, R.; Zaitsev, E.M.; Gleason, C.E.; Patel, D.N.; Bauer, A.J.; Cantley, A.M.; Yang, W.S.; et al. Ferroptosis: An iron-dependent form of nonapoptotic cell death. Cell 2012, 149, 1060–1072. [Google Scholar] [CrossRef] [PubMed]
- Tang, D.; Chen, X.; Kang, R.; Kroemer, G. Ferroptosis: Molecular mechanisms and health implications. Cell Res. 2021, 31, 107–125. [Google Scholar] [CrossRef] [PubMed]
- Gong, D.; Chen, M.; Wang, Y.; Shi, J.; Hou, Y. Role of ferroptosis on tumor progression and immunotherapy. Cell Death Discov. 2022, 8, 427. [Google Scholar] [CrossRef] [PubMed]
- Koppula, P.; Zhuang, L.; Gan, B. Cystine transporter SLC7A11/xCT in cancer: Ferroptosis, nutrient dependency, and cancer therapy. Protein Cell 2021, 12, 599–620. [Google Scholar] [CrossRef]
- Koppula, P.; Zhang, Y.; Zhuang, L.; Gan, B. Amino acid transporter SLC7A11/xCT at the crossroads of regulating redox homeostasis and nutrient dependency of cancer. Cancer Commun. 2018, 38, 12. [Google Scholar] [CrossRef]
- Rochette, L.; Dogon, G.; Rigal, E.; Zeller, M.; Cottin, Y.; Vergely, C. Lipid Peroxidation and Iron Metabolism: Two Corner Stones in the Homeostasis Control of Ferroptosis. Int. J. Mol. Sci. 2022, 24, 449. [Google Scholar] [CrossRef]
- Capelletti, M.M.; Manceau, H.; Puy, H.; Peoc’H, K. Ferroptosis in Liver Diseases: An Overview. Int. J. Mol. Sci. 2020, 21, 4908. [Google Scholar] [CrossRef]
- Cahuzac, K.M.; Lubin, A.; Bosch, K.; Stokes, N.; Shoenfeld, S.M.; Zhou, R.; Lemon, H.; Asara, J.; Parsons, R.E. AKT activation because of PTEN loss upregulates xCT via GSK3beta/NRF2, leading to inhibition of ferroptosis in PTEN-mutant tumor cells. Cell Rep. 2023, 42, 112536. [Google Scholar] [CrossRef]
- Li, S.Q.; Xu, W.T.; Yin, Y.X.; Wei, H.T.; Li, K.Z.; Xie, M.Z.; Lv, F.; Xie, L.Y.; Hu, B.L. SNHG4-mediated PTEN destabilization confers oxaliplatin resistance in colorectal cancer cells by inhibiting ferroptosis. Apoptosis 2024, 29, 835–848. [Google Scholar] [CrossRef]
- Ilyas, S.I.; Gores, G.J. Pathogenesis, diagnosis, and management of cholangiocarcinoma. Gastroenterology 2013, 145, 1215–1229. [Google Scholar] [CrossRef] [PubMed]
- Qian, M.B.; Chen, Y.D.; Liang, S.; Yang, G.J.; Zhou, X.N. The global epidemiology of clonorchiasis and its relation with cholangiocarcinoma. Infect. Dis. Poverty 2012, 1, 4. [Google Scholar] [CrossRef] [PubMed]
- Lee, Y.R.; Chen, M.; Pandolfi, P.P. The functions and regulation of the PTEN tumour suppressor: New modes and prospects. Nat. Rev. Mol. Cell Biol. 2018, 19, 547–562. [Google Scholar] [CrossRef] [PubMed]
- Yi, J.; Zhu, J.; Wu, J.; Thompson, C.B.; Jiang, X. Oncogenic activation of PI3K-AKT-mTOR signaling suppresses ferroptosis via SREBP-mediated lipogenesis. Proc. Natl. Acad. Sci. USA 2020, 117, 31189–31197. [Google Scholar] [CrossRef] [PubMed]
- Mao, X.; Xu, J.; Xiao, M.; Liang, C.; Hua, J.; Liu, J.; Wang, W.; Yu, X.; Meng, Q.; Shi, S. ARID3A enhances chemoresistance of pancreatic cancer via inhibiting PTEN-induced ferroptosis. Redox Biol. 2024, 73, 103200. [Google Scholar] [CrossRef]
- Xue, X.; Dai, T.; Che n, J.; Xu, Y.; Yang, Z.; Huang, J.; Xu, W.; Li, S.; Meng, Q. PPARgamma activation suppresses chondrocyte ferroptosis through mitophagy in osteoarthritis. J. Orthop. Surg. Res. 2023, 18, 620. [Google Scholar] [CrossRef]
- Qiu, Y.; Wang, C.; Wang, J.; Lv, Q.; Sun, L.; Yang, Y.; Liu, M.; Liu, X.; Li, C.; Tang, B. Revealing the dynamic whole transcriptome landscape of Clonorchis sinensis: Insights into the regulatory roles of noncoding RNAs and microtubule-related genes in development. PLoS Neglect. Trop. Dis. 2024, 18, e0012311. [Google Scholar] [CrossRef]
- Zhu, L.; Liu, J.; Dao, J.; Lu, K.; Li, H.; Gu, H.; Liu, J.; Feng, X.; Cheng, G. Molecular characterization of S. japonicum exosome-like vesicles reveals their regulatory roles in parasite-host interactions. Sci. Rep. 2016, 6, 25885. [Google Scholar] [CrossRef]
- Wang, D.; Jiang, P.; Wu, X.; Zhang, Y.; Wang, C.; Li, M.; Liu, M.; Yin, J.; Zhu, G. Requirement of microtubules for secretion of a micronemal protein CpTSP4 in the invasive stage of the apicomplexan Cryptosporidium parvum. mBio 2024, 15, e0315823. [Google Scholar] [CrossRef]
- Sae-Fung, A.; Mutirangura, A.; Jitkaew, S. Identification and validation of a novel ferroptosis-related gene signature for prognosis and potential therapeutic target prediction in cholangiocarcinoma. Front. Immunol. 2022, 13, 1051273. [Google Scholar] [CrossRef]






| No. | miRNAs | Average TPM | Sequences (5′-3′) |
|---|---|---|---|
| 1 | csi-let-7-5p | 81,142 | TGGAAGACTTGTGATTTAGTTG |
| 2 | csi-miR-61-5p | 47,397 | TGACTAGAAAGAGCACTCACATCC |
| 3 | bantam | 42,816 | TGAGATCGCGATTAAAGCTGGT |
| 4 | csi-miR-125a-5p | 41,060 | TCCCTGAGACCCTTTGATTGCC |
| 5 | csi-miR-71a-5p | 36,373 | TGAAAGACATGGGTAATGAGT |
| 6 | csi-miR-755 | 32,329 | TGAGATTCAACTACTTCAACT |
| 7 | csi-miR-36a | 23,914 | GTCACCGGGTAGACATTCATTCAC |
| 8 | csi-miR-2162-3p | 16,138 | TATTATGCAACGTTTCACTCT |
| 9 | csi-miR-31-5p | 15,469 | TGGCAAGATTATGGCGAAGCTGA |
| 10 | csi-miR-96-5p | 15,254 | CTTGGCACTTTGGAATTGTCAC |
| 11 | csi-miR-281-3p | 14,198 | TGTCATGGAGTTGCTCTCTATA |
| 12 | csi-miR-46 | 14,185 | ATGTCATGGAGTTGCTCTCTACA |
| 13 | csi-miR-3479 | 9856 | GTATTGCACTTTCCTTCGCCTTA |
| 14 | csi-miR-125a | 9820 | TCCCTGAGACCCTTTGATTGCC |
| 15 | csi-miR-745-3p | 8857 | TGCTGCCTGATAAGAGCTGTG |
| 16 | csi-miR-7-5p | 7942 | TGGAAGACTTGTGATTTAGTTG |
| 17 | csi-miR-219-5p | 7372 | TGATTGTCCATTCGCATTTCTT |
| 18 | csi-miR-10-5p | 5984 | AACCCTGTAGACCCGAGTTTGG |
| 19 | csi-miR-1 | 5610 | TGGAATGTTGTGAAGTATGTGC |
| 20 | csi-miR-36a-3p | 4737 | TCACCGGGTAGACATTCCTTGC |
| 21 | csi-miR-71b-5p | 3313 | TGAAAGACTTGAGTAGTGAGACG |
| 22 | csi-miR-2a-3p | 1675 | AATCACAGCCCTGCTTGGAACC |
| 23 | csi-miR-190 | 1279 | CAGTGACCAGACATATCCCT |
| 24 | csi-miR-9 | 1149 | CTTGGCACTTTGGAATTGTCAC |
| 25 | csi-miR-277 | 1060 | TAAATGCATTATCTGGTATGAT |
| 26 | csi-miR-61-5p | 948 | TGTGGGTCTCTTTCTTGTCCAT |
| 27 | csi-miR-307 | 646 | TCACAACCTACTTGATTGAGG |
| 28 | csi-miR-125c-5p | 361 | TCCCTGAGACCTTAGAGTTGTC |
| 29 | csi-miR-8-3p | 218 | TAATACTGTTAGGTAAAGATGCC |
| 30 | csi-miR-36b-3p | 213 | CCACCGGGTAGACATTCATCCGC |
| 31 | csi-miR-2e-3p | 159 | TATCACAGTCCAAGCTTTGGT |
| 32 | csi-miR-10-3p | 81 | AAATTCGAGTCTATAAGGAAAAA |
| 33 | csi-miR-190-5p | 81 | TGATATGTATGGGTTACTTGGTG |
| 34 | csi-miR-2b | 41 | TATCACAGCCCTGCTTGGGACACA |
| 35 | csi-miR-87 | 27 | GTGAGCAAAGTTTCAGGTGT |
| 36 | csi-miR-124 | 14 | TTAAGGCACGCGGTGAATGTCA |
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Wen, L.; Li, M.; Yin, J. RETRACTED: PTEN Deficiency Induced by Extracellular Vesicle miRNAs from Clonorchis sinensis Potentiates Cholangiocarcinoma Development by Inhibiting Ferroptosis. Int. J. Mol. Sci. 2024, 25, 10350. https://doi.org/10.3390/ijms251910350
Wen L, Li M, Yin J. RETRACTED: PTEN Deficiency Induced by Extracellular Vesicle miRNAs from Clonorchis sinensis Potentiates Cholangiocarcinoma Development by Inhibiting Ferroptosis. International Journal of Molecular Sciences. 2024; 25(19):10350. https://doi.org/10.3390/ijms251910350
Chicago/Turabian StyleWen, Lijia, Meng Li, and Jigang Yin. 2024. "RETRACTED: PTEN Deficiency Induced by Extracellular Vesicle miRNAs from Clonorchis sinensis Potentiates Cholangiocarcinoma Development by Inhibiting Ferroptosis" International Journal of Molecular Sciences 25, no. 19: 10350. https://doi.org/10.3390/ijms251910350
APA StyleWen, L., Li, M., & Yin, J. (2024). RETRACTED: PTEN Deficiency Induced by Extracellular Vesicle miRNAs from Clonorchis sinensis Potentiates Cholangiocarcinoma Development by Inhibiting Ferroptosis. International Journal of Molecular Sciences, 25(19), 10350. https://doi.org/10.3390/ijms251910350
