Gene-Regulated Signaling Pathways in Cancer

A special issue of Genes (ISSN 2073-4425). This special issue belongs to the section "Human Genomics and Genetic Diseases".

Deadline for manuscript submissions: 25 September 2026 | Viewed by 1021

Editor


E-Mail Website
Guest Editor
Department of Biology, Faculty of Medicine, University of Thessaly, Larisa, Greece
Interests: Ras signaling; caveolin-1 (CAV1); EMT; membrane curvature (MC)

Special Issue Information

Dear Colleagues,

Caveolins, the main structural proteins of caveolae, play vital roles in regulating plasma membrane curvature, compartmentalizing signaling pathways, and influencing gene expression. Among them, caveolin-1 (CAV1) acts as a scaffolding protein that modulates key signaling cascades such as MAPK/ERK and PI3K/AKT through interactions with Ras and related intermediates. Altered caveolin expression or aberrant Ras activation can disrupt membrane organization and curvature, leading to widespread effects on cell signaling and transcriptional regulation.

CAV1 expression is controlled by multiple mechanisms, including promoter methylation, histone modification, and regulation by noncoding RNAs, allowing cells to finely tune its levels in response to physiological and pathological cues. Caveolin-1 also interacts with transcription factors like STAT3, NF-κB, and p53, thereby modulating gene networks involved in proliferation, survival, and stress adaptation.

By linking membrane architecture to nuclear signaling, caveolin-1 integrates mechanical and biochemical signals that shape cell behavior. Its dysregulation can drive processes such as epithelial–mesenchymal transition (EMT), migration, and invasion, which are central to disease progression. Depending on context, caveolin-1 may act as either a tumor suppressor or promoter. Overall, this membrane–signaling–gene regulatory network underscores how nanoscale membrane dynamics influence macroscopic cellular outcomes and therapeutic possibilities.

Dr. Alexander Damalas
Guest Editor

Manuscript Submission Information

Manuscripts should be submitted online at www.mdpi.com by registering and logging in to this website. Once you are registered, click here to go to the submission form. Manuscripts can be submitted until the deadline. All submissions that pass pre-check are peer-reviewed. Accepted papers will be published continuously in the journal (as soon as accepted) and will be listed together on the special issue website. Research articles, review articles as well as short communications are invited. For planned papers, a title and short abstract (about 250 words) can be sent to the Editorial Office for assessment.

Submitted manuscripts should not have been published previously, nor be under consideration for publication elsewhere (except conference proceedings papers). All manuscripts are thoroughly refereed through a single-anonymized peer-review process. A guide for authors and other relevant information for submission of manuscripts is available on the Instructions for Authors page. Genes is an international peer-reviewed open access monthly journal published by MDPI.

Please visit the Instructions for Authors page before submitting a manuscript. The Article Processing Charge (APC) for publication in this open access journal is 2600 CHF (Swiss Francs). Submitted papers should be well formatted and use good English. Authors may use MDPI's English editing service prior to publication or during author revisions.

Keywords

  • caveolin-1 (CAV1)
  • caveolae
  • Ras
  • EMT
  • invasion
  • MAPK
  • PI3K-Akt
  • membrane curvature (MC)

Benefits of Publishing in a Special Issue

  • Ease of navigation: Grouping papers by topic helps scholars navigate broad scope journals more efficiently.
  • Greater discoverability: Special Issues support the reach and impact of scientific research. Articles in Special Issues are more discoverable and cited more frequently.
  • Expansion of research network: Special Issues facilitate connections among authors, fostering scientific collaborations.
  • External promotion: Articles in Special Issues are often promoted through the journal's social media, increasing their visibility.
  • Reprint: MDPI Books provides the opportunity to republish successful Special Issues in book format, both online and in print.

Further information on MDPI's Special Issue policies can be found here.

Published Papers (1 paper)

Order results
Result details
Select all
Export citation of selected articles as:

Research

20 pages, 5680 KB  
Article
Integrated Evolutionary and Multi-Omic Analysis of STAT Family Activation Across Solid Tumors
by Dunja Lukic, Pietro Hiram Guzzi and Federico Manuel Giorgi
Genes 2026, 17(5), 547; https://doi.org/10.3390/genes17050547 - 3 May 2026
Viewed by 610
Abstract
Background/Objectives: The STAT (Signal Transducer and Activator of Transcription) family of seven transcription factors mediates cytokine and growth-factor signaling, regulating proliferation, differentiation, and immunity. While STAT3/STAT5 are established oncogenes and STAT1/STAT2 are classically viewed as tumor suppressors, emerging evidence indicates context-dependent roles [...] Read more.
Background/Objectives: The STAT (Signal Transducer and Activator of Transcription) family of seven transcription factors mediates cytokine and growth-factor signaling, regulating proliferation, differentiation, and immunity. While STAT3/STAT5 are established oncogenes and STAT1/STAT2 are classically viewed as tumor suppressors, emerging evidence indicates context-dependent roles in tumorigenesis. This study aimed to integrate evolutionary analysis with bulk transcriptomic, regulon, single-cell, and exploratory chromatin-binding analyses of the STAT family in human solid tumors. Methods: Orthologs and paralogs of human STAT genes (81 sequences total) were retrieved across vertebrates and invertebrates; a phylogenetic tree was constructed using MUSCLE alignment and Neighbor-Joining in MEGA12. Differential expression was assessed in TCGA solid tumors versus GTEx normal tissues. Master-regulator activity was inferred using the corto algorithm. Single-cell RNA-seq datasets were used to compare malignant and non-malignant cell populations. STAT1 chromatin binding was examined via ChIP-seq in interferon-stimulated HeLa and K562 cells. Results: Phylogeny resolved seven conserved vertebrate clades, with endocrine-responsive STAT3/STAT5 showing higher conservation and immune-associated STAT1/STAT2/STAT4/STAT6 exhibiting faster divergence. The majority of STAT genes were frequently upregulated across multiple solid tumors, with activated regulons confirming functional transcriptional engagement. Single-cell analysis demonstrated tumor-cell-autonomous upregulation of STAT1 and STAT2 in the HNSCC dataset. STAT1 ChIP-seq revealed asymmetric forward/reverse-strand read density around peak summits, supporting non-canonical DNA recognition. Conclusions: The STAT family operates as an evolutionarily conserved, broadly activated transcriptional module in human solid cancers, combining quantitative upregulation with qualitative shifts in DNA-binding dynamics. These findings refine our understanding of JAK/STAT signaling in oncology and highlight opportunities for network-targeted therapies. Full article
(This article belongs to the Special Issue Gene-Regulated Signaling Pathways in Cancer)
Show Figures

Figure 1

Back to TopTop