Applications of Machine Learning and Deep Learning for Foliar Nutritional Deficiency: A Systematic Review
Abstract
1. Introduction
2. Materials and Methods
2.1. Type of Study and PICo Strategy
2.2. Data Sources and Search Strategy
- Document type: “Article” and “Conference paper”—conference papers were included due to their relevance in presenting applied studies and methodological innovations at scientific events, such as conferences, which is a characteristic of the artificial intelligence field.
- Source type: “Journal” and “Conference proceeding”—corresponding to the selected document types.
- Language: English—to ensure linguistic consistency in the analyses and because it is the predominant language in scientific publications within the field.
2.3. Eligibility Criteria
2.4. Article Selection Process
2.5. Data Extraction, Organization, and Synthesis
2.6. Descriptive Data Synthesis
2.7. Bibliometric Network Analysis
2.8. Risk of Bias and Reproducibility Assessment
- Type of validation (field versus controlled environment).
- Description of datasets and sample size.
- Clarity in dataset partitioning, including training/testing splits and prevention of data leakage.
- Completeness of reported performance metrics.
- Public availability of data and/or code.
- Description of the experimental protocol and essential hyperparameters.
2.9. Final Synthesis
3. Results
3.1. Bibliometric Analysis
3.2. Agronomic Characteristics of the Studies
3.3. Models and Architecture
3.4. Image Modalities and Acquisition Platforms
3.5. Validation and Experimental Conditions
4. Discussion
- Field validation using minimum data collection protocols, including environmental conditions, lighting, varieties, phenology, devices used, and external testing.
- Data and code standardization and sharing, with comprehensive documentation of the project pipeline.
- Lightweight models with interpretable outputs, particularly for edge/mobile deployment, incorporating strategies for multiple deficiencies and severity levels that reflect producers’ realities.
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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| # | Step | Description |
|---|---|---|
| 1 | Title | Specification of the topic and indication that it is a systematic review protocol |
| 2 | Registration | Indicate whether the protocol was registered in PROSPERO; however, reviews in the agricultural field do not require registration |
| 3 | Authors | Provide all relevant information about the authors, affiliations, and contact details |
| 4 | Funding Support | Indicate any financial or institutional support |
| 5 | Conflicts of Interest | Report potential conflicts of interest |
| 6 | Rationale | Explain the relevance of the topic and the existing research gaps |
| 7 | Objectives | State the objectives of the review along with the review question(s), using the PICO format, which may be adapted to the context |
| 8 | Eligibility Criteria | Define the inclusion and exclusion criteria for the studies |
| 9 | Information Sources | List all databases to be consulted |
| 10 | Search Strategy | Specify the search terms and strategies, including keywords and Boolean operators |
| 11 | Record Management | Describe how records are managed and organized |
| 12 | Study Selection | Explain how studies will be selected |
| 13 | Data Extraction | Detail the data extraction process |
| 14 | Data Items | Define the data items to be extracted according to the study scope |
| 15 | Outcomes/Prioritization | Specify the prioritization of studies and outcomes according to the defined metrics |
| 16 | Risk of Bias | Describe the analyses conducted to identify potential risks of bias |
| 17 | Data Synthesis | Explain how the data will be analyzed, such as through meta-analysis or descriptive analysis |
| Database | Search Terms and Boolean Operators |
|---|---|
| Scopus | (TITLE-ABS-KEY(“machine learning” OR “deep learning” OR “artificial intelligence” OR “neural network” OR “CNN” OR “computer vision” OR “image processing” OR “pattern recognition”)) AND (TITLE-ABS-KEY(“nutrient deficiency” OR “nutritional deficiency” OR “nutrient diagnosis” OR “foliar diagnosis” OR “leaf diagnosis” OR “deficiency detection” OR “deficiency identification” OR “nutrient stress” OR “nitrogen deficiency” OR “phosphorus deficiency” OR “potassium deficiency”)) AND (TITLE-ABS-KEY(“crop” OR “cereal” OR “grain” OR “sorghum” OR “maize” OR “corn” OR “soybean” OR “soy” OR “rice” OR “wheat” OR “cotton” OR “tomato” OR “plant” OR “leaf” OR “agriculture” OR “agricultural”)) |
| Web of Science (WoS) | TS = (“machine learning” OR “deep learning” OR “artificial intelligence” OR “neural network” OR “CNN” OR “computer vision” OR “image processing” OR “pattern recognition”) AND TS = (“nutrient deficiency” OR “nutritional deficiency” OR “nutrient diagnosis” OR “foliar diagnosis” OR “leaf diagnosis” OR “deficiency detection” OR “deficiency identification” OR “nutrient stress”) AND TS = (“crop” OR “cereal” OR “grain” OR “sorghum” OR “maize” OR “corn” OR “soybean” OR “soy” OR “rice” OR “wheat” OR “cotton” OR “tomato” OR “plant” OR “leaf” OR “agriculture”)) |
| IEEE Xplore | ((“machine learning” OR “deep learning” OR “artificial intelligence” OR “neural network” OR “CNN” OR “computer vision” OR “image processing”) AND (“nutrient deficiency” OR “nutritional deficiency” OR “nutrient diagnosis” OR “foliar diagnosis” OR “deficiency detection”) AND (“crop” OR “cereal” OR “grain” OR “sorghum” OR “maize” OR “corn” OR “soybean” OR “rice” OR “wheat” OR “cotton” OR “tomato” OR “plant” OR “agriculture”)) |
| Inclusion Criteria | Exclusion Criteria |
|---|---|
| (i) applied ML and/or DL to images to identify, detect, and classify foliar nutritional deficiencies; | (i) The analysis of the abstracts, along with the conclusion, excluded articles that were out of scope; |
| (ii) analyzed plants/agricultural crops; | (ii) Article without access; |
| (iii) presented methodology and results (e.g., metrics, accuracy, F1-score, when applicable); | (iii) Some abstracts lack sufficient methodological data; |
| (iv) were published within the period from 2012 to 2026; | (iv) Studies outside the scope (e.g., disease/pest detection without a nutritional focus or nutritional studies without the use of imaging and ML/DL) and after verifying the methodology). |
| (v) were available in full-text format. |
| Journal | Number of the Articles | % Total (N = 200 Articles) | Number of Citations (Total) |
|---|---|---|---|
| IEEE | 64 | 32.0 | 226 |
| Elsevier BV | 12 | 6.0 | 143 |
| MDPI | 10 | 5.0 | 251 |
| Springer | 9 | 4.5 | 29 |
| Agronomy | 5 | 2.5 | 34 |
| Computers and Electronics in Agriculture | 4 | 2.0 | 168 |
| Nature Research | 3 | 1.5 | 12 |
| Frontiers in Plant Science | 2 | 2.0 | 40 |
| Remote Sensing | 2 | 2.0 | 87 |
| Electronics (Switzerland) | 2 | 2.0 | 79 |
| Reference | Database | Article | Authors | Conclusion | DOI/Year/Citations |
|---|---|---|---|---|---|
| [196] | Scopus | An explainable deep machine vision framework for plant stress phenotyping | Ghosal et al. | Proposes an explainable framework that identifies, classifies, and quantifies foliar stresses (including nutritional deficiencies) from images, demonstrating robustness and potential for large-scale deployment. | https://doi.org/10.1073/PNAS.1716999115 (2018)—454 |
| [205] | Scopus | A comparative study of deep CNN in forecasting and classifying the macronutrient deficiencies on development of tomato plant | Tran et al. | Demonstrates that CNN models (Inception-ResNet v2 and Autoencoder) and ensemble approaches improve the prediction and classification of deficiencies (Ca, K, and N) in tomato plants, with the ensemble achieving superior validation performance. | https://doi.org/10.3390/app9081601 (2019)—124 |
| [184] | Scopus | A deep learning approach to measure stress level in plants due to Nitrogen deficiency | Azimi, S et al. | It proposes a 23-layer CNN that outperforms traditional methods in classifying nitrogen stress levels using images of shoots. | https://doi.org/10.1016/j.measurement.2020.108650 (2021)—109 |
| [62] | WoS | Estimation of paddy rice nitrogen content and accumulation both at leaf and plant levels from UAV hyperspectral imagery | Wang, L et al. | It demonstrates that the use of UAV-mounted hyperspectral sensors enables high-accuracy estimation of nitrogen concentration and accumulation at different plant levels. | https://doi.org/10.3390/rs13152956 (2021)—86 |
| [42] | Scopus | Nutrients deficiency diagnosis of rice crop by weighted average ensemble learning | Talukder & Sarkar. | Shows that a weighted ensemble of pre-trained CNN enhances performance and achieves high test accuracy for diagnosing nutritional deficiencies in rice crops. | https://doi.org/10.1016/j.atech.2022.100155 (2023)—80 |
| [26] | Scopus | Using deep convolutional neural networks for image-based diagnosis of nutrient deficiencies in rice | Xu, Z et al. | It validates that deep neural net-works can automatically diagnose ten types of deficiencies in rice with performance superior to human visual inspection. The best model obtained test precision of 97,44% identifying N, P and K deficiencies. | https://doi.org/10.1155/2020/7307252 (2020)—79 |
| [142] | Scopus | Comparative performance of four CNN-based deep learning variants in detecting Hispa pest, two fungal diseases, and NPK deficiency symptoms of rice (Oryza sativa) | Dey et al. | Compares CNN models and shows that performance depends on the stressor and dataset (public and field), with specific models outperforming others for different deficiencies and diseases. | https://doi.org/10.1016/j.compag.2022.107340 (2022) |
| [202] | Scopus | Airborne hyperspectral imaging of nitrogen deficiency on crop traits and yield of maize by machine learning and radiative transfer modeling. | Wang, S et al. | It concludes that integrating radiative transfer models with machine learning improves the prediction of biomass and yield in maize under nitrogen stress. | https://doi.org/10.1016/j.jag.2021.102617 (2021)—72 |
| [65] | WoS | Ensemble Averaging of Transfer Learning Models for Identification of Nutritional Deficiency in Rice Plant | Sharma, M et al. | It demonstrates that combining multiple pre-trained models in an ensemble reduces individual classification errors and enhances robustness in nutritional diagnosis. | https://doi.org/10.3390/electronics11010148 (2022)—71 |
| [25] | WoS | Using Deep Convolutional Neural Network for Image-Based Diagnosis of Nutrient Deficiencies in Plants Grown in Aquaponics | Taha, M. F. et al. | It demonstrates the technical feasibility of DL for monitoring vegetable health in aquaponic systems, enabling rapid and non-invasive diagnostics. | https://doi.org/10.3390/chemosensors10020045 (2022)—70 |
| [137] | Scopus | Deep Learning Based Disease, Pest Pattern and Nutritional Deficiency Detection System for “Zingiberaceae” Crop | Waheed et al. | Evaluates DL on a real ginger dataset and reports strong performance in classifying diseases, pests, and nutritional deficiencies, highlighting potential for real-time applications. | https://doi.org/10.3390/agriculture12060742 (2022) |
| Crop | Frequency | Percentage (%) | Predominant Region in the Articles | Technical Remarks |
|---|---|---|---|---|
| Rice | 44 | 22.00 | Asia | Crop with the largest data volume, mainly focused on NPK deficiencies |
| Multi-crop studies | 33 | 16.50 | Asia | Emphasis on model generalization for universal mobile applications |
| Maize | 15 | 7.50 | Asia and Americas | Brazil stands out, especially studies conducted at ESALQ/FZEA |
| Tomato | 12 | 6.00 | Asia | Focus on controlled environments (greenhouses) and bench-scale systems |
| Coffee | 10 | 5.00 | Latin America and Asia | Brazil leads technical publications on AI applications for coffee |
| Banana | 8 | 4.00 | Asia | Many studies specifically address potassium deficiency |
| Pepper | 6 | 3.00 | Asia/S. America | Focuses on multi-class classification of NPK and micro-element stressors like Magnesium. |
| Oil palm | 6 | 3.00 | Asia | Frequently utilizes SVM and RBF networks for detection under uncontrolled daylight conditions. |
| Lettuce | 5 | 2.50 | Asia | Emphasis on hydroponic systems and plant factories |
| Peanut | 4 | 2.00 | Asia | Studies focused on foliar diagnosis of nitrogen and chlorophyll via smartphones |
| Citrus | 4 | 2.00 | Asia/Europe | Often distinguishes between nutritional chlorosis and Huanglongbing (greening) disease symptoms. |
| Wheat | 4 | 2.00 | Asia/Europe | High application of UAV-based RGB and multispectral imagery for field-scale nitrogen monitoring. |
| Bean | 3 | 1.50 | S. America/Asia | Studies emphasize early-stage detection of Nitrogen and Phosphorus through texture and color descriptors. |
| Cucumber | 2 | 1.00 | Asia | Extensive use of hyperspectral images and regression models for nitrogen estimation |
| Cotton | 2 | 1.00 | Asia | Growing focus on UAV/drone-based detection |
| Other crops (N = 28) | 24 | 12.00 | Variable | Represents the highest diversity of tropical and horticultural crops |
| Category | Nutrient | Mentions | % Total | % Category | Characteristic Visual Symptom |
|---|---|---|---|---|---|
| Primary macronutrients | N | 153 | 22.80 | 40.20 | Progressive generalized chlorosis |
| K | 126 | 18.80 | 33.10 | Marginal necrosis of older leaves | |
| P | 102 | 15.20 | 26.80 | Purplish coloration, reduced growth | |
| Subtotal | 381 | 56.7% | 100% | ||
| Secondary Macronutrients | Ca | 87 | 12.90 | 57.6 | Apical necrosis (blossom-end rot) |
| Mg | 47 | 7.00 | 31.10 | Interveinal chlorosis of older leaves | |
| S | 17 | 2.50 | 11.30 | Uniform chlorosis of young leaves | |
| Subtotal | 151 | 22.50% | 100% | ||
| Micronutrients and Other elements | Fe | 77 | 11.50 | 55.00 | Interveinal chlorosis of young leaves |
| Manganese (Mn) | 20 | 3.00 | 14.30 | Necrotic spots, chlorosis | |
| Zn | 19 | 2.80 | 13.60 | Small leaves, shortened internodes | |
| B | 15 | 2.20 | 10.70 | Deformation of new organs | |
| Cu | 3 | 0.40 | 2.10 | Shoot tip wilting | |
| Mo | 2 | 0.30 | 1.40 | Chlorosis with necrosis | |
| Other elements * | 4 | 0.6 | 2.9 | Variable | |
| Subtotal | 140 | 20.80% | 100% | ||
| OVERALL TOTAL | 672 | 100% |
| Model | Mentions | % | Category | Characteristics |
|---|---|---|---|---|
| VGG-16 | 70 | 11.48 | DL | Sequential architecture |
| ResNet | 65 | 10.66 | DL | Use of skip connections |
| Random Forest | 57 | 9.34 | ML | Decision tree ensemble |
| SVM | 52 | 8.52 | ML | Kernel-based classifier (Support Vector Machine) |
| Custom (non-standardized) CNNs | 37 | 6.07 | DL | Study-specific architectures developed for individual applications |
| Inception | 27 | 4.43 | DL | Use of multi-scale convolution modules |
| KNN | 23 | 3.77 | ML | A simple, non-parametric instance-based learning algorithm that classifies based on feature proximity. |
| MobileNet | 20 | 3.28 | DL | Focus on computational efficiency and mobile deployment |
| ANN | 20 | 3.28 | DL | Artificial Neural Networks |
| AlexNet | 13 | 2.13 | DL | A pioneering deep CNN featuring stacked convolutional layers, ReLU activation, and dropout for regularization. |
| Other architectures | 226 | 37.07 | Mixed | Includes 108 additional models (AlexNet, YOLO, ViT, KNN, etc.) |
| Category | Type | Frequency | Percentage (%) | Typical Resolution | Characteristics |
|---|---|---|---|---|---|
| Image resolution | RGB | 172 | 86.00 | 400–700 nm (visible) | Low cost, high availability |
| Hyperspectral | 14 | 7.00 | 100–400 bands | High spectral resolution | |
| Multispectral | 4 | 2.00 | 4–12 bands + NIR | Includes near-infrared | |
| Multimodal (≥2 types) | 10 | 5.00 | Various | Various | |
| Acquisition platform | Digital Camera | 136 | 68.00 | <0.1 cm/pixel | High spatial resolution |
| UAV/Drone | 17 | 8.50 | 0.5–5 cm/pixel | Medium-area coverage | |
| Smartphone | 40 | 29.4% | <0.5 cm/pixel | Accessible and portable | |
| Other platforms | 31 | 15.50 | Various | Various |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Soares, C.C.; Regazzo, J.R.; Silva, T.L.d.; Silva Tavares, M.; Devechio, F.d.F.d.S.; Martins Silva, R.; Tech, A.R.B.; Baesso, M.M. Applications of Machine Learning and Deep Learning for Foliar Nutritional Deficiency: A Systematic Review. AgriEngineering 2026, 8, 101. https://doi.org/10.3390/agriengineering8030101
Soares CC, Regazzo JR, Silva TLd, Silva Tavares M, Devechio FdFdS, Martins Silva R, Tech ARB, Baesso MM. Applications of Machine Learning and Deep Learning for Foliar Nutritional Deficiency: A Systematic Review. AgriEngineering. 2026; 8(3):101. https://doi.org/10.3390/agriengineering8030101
Chicago/Turabian StyleSoares, Cíntia Cristina, Jamile Raquel Regazzo, Thiago Lima da Silva, Marcos Silva Tavares, Fernanda de Fátima da Silva Devechio, Ronilson Martins Silva, Adriano Rogério Bruno Tech, and Murilo Mesquita Baesso. 2026. "Applications of Machine Learning and Deep Learning for Foliar Nutritional Deficiency: A Systematic Review" AgriEngineering 8, no. 3: 101. https://doi.org/10.3390/agriengineering8030101
APA StyleSoares, C. C., Regazzo, J. R., Silva, T. L. d., Silva Tavares, M., Devechio, F. d. F. d. S., Martins Silva, R., Tech, A. R. B., & Baesso, M. M. (2026). Applications of Machine Learning and Deep Learning for Foliar Nutritional Deficiency: A Systematic Review. AgriEngineering, 8(3), 101. https://doi.org/10.3390/agriengineering8030101

