Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers
Abstract
:1. Introduction
2. Materials and Methods
2.1. Plant Material
2.2. Molecular Analysis
2.3. Data Analysis
2.3.1. Genetic Diversity Analyses
2.3.2. Genetic Relationships among Cultivars
3. Results and Discussion
3.1. Microsatellite Analysis and Genetic Diversity
3.2. Cultivar Analysis
3.3. Genetic Relationships among Cultivars
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Cultivars a | Accession Code | VVIB01 | VMC1b11 | VMC4F31 | VVMD5 | VVMD7 | VVMD21 | VVMD24 | VVMD25 | VVMD27 | VVMD28 | VVMD32 | VVIH54 | VVIN16 | VVIN73 | VVIP31 | VVIP60 | VVIQ52 | VVS2 | VVIV37 | VVIV67 | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AFUS ALI | Man-4 | 291 | 295 | 184 | 184 | 168 | 190 | 224 | 228 | 236 | 246 | 255 | 255 | 209 | 209 | 246 | 252 | 186 | 186 | 260 | 260 | 256 | 270 | 166 | 178 | 151 | 151 | 264 | 264 | 174 | 184 | 318 | 318 | 83 | 85 | 131 | 133 | 151 | 163 | 358 | 362 |
AHMEUR BOU AHMEUR | Lau-5, Lau-6 | 291 | 295 | 184 | 184 | 190 | 190 | 228 | 236 | 236 | 246 | 249 | 255 | 209 | 209 | 252 | 264 | 184 | 194 | 250 | 256 | 250 | 254 | 166 | 168 | 151 | 153 | 264 | 264 | 184 | 192 | 322 | 322 | 83 | 89 | 133 | 146 | 161 | 161 | 358 | 366 |
ALICANTE HENRI BOUSCHET | Lau-8 | 291 | 295 | 182 | 188 | 174 | 206 | 224 | 236 | 236 | 240 | 243 | 249 | 209 | 211 | 240 | 240 | 182 | 194 | 246 | 262 | 248 | 270 | 164 | 168 | 151 | 159 | 256 | 264 | 176 | 184 | 322 | 322 | 83 | 89 | 131 | 144 | 161 | 171 | 358 | 364 |
ATTIKA SEEDLESS | Pla-2 | 291 | 295 | 166 | 184 | 184 | 206 | 236 | 238 | 250 | 252 | 249 | 249 | 213 | 217 | 246 | 252 | 186 | 194 | 246 | 246 | 254 | 270 | 164 | 166 | 151 | 157 | 256 | 264 | 186 | 188 | 320 | 326 | 85 | 85 | 133 | 151 | 163 | 181 | 372 | 379 |
BEBA | Chu-2 | 291 | 295 | 184 | 188 | 188 | 188 | 234 | 238 | 240 | 246 | 249 | 255 | 209 | 211 | 252 | 252 | 182 | 190 | 246 | 260 | 254 | 270 | 164 | 166 | 151 | 153 | 256 | 264 | 190 | 192 | 318 | 322 | 83 | 85 | 133 | 142 | 161 | 163 | 366 | 372 |
BOBAL | Ron-1 | 291 | 295 | 184 | 188 | 174 | 184 | 226 | 232 | 236 | 240 | 243 | 243 | 209 | 211 | 240 | 264 | 182 | 190 | 236 | 262 | 248 | 270 | 166 | 168 | 151 | 153 | 264 | 264 | 176 | 186 | 326 | 326 | 83 | 85 | 144 | 146 | 159 | 163 | 358 | 362 |
CARIGNAN NOIR | Lau-17 | 291 | 295 | 174 | 184 | 180 | 188 | 224 | 226 | 236 | 236 | 249 | 253 | 209 | 215 | 240 | 252 | 182 | 186 | 250 | 260 | 248 | 250 | 166 | 166 | 151 | 153 | 264 | 264 | 176 | 176 | 318 | 326 | 83 | 85 | 142 | 144 | 163 | 171 | 362 | 375 |
CAYETANA BLANCA | Alb-1, Chu-3, Lau-12, Lau-13, Lau-10, Man-3 | 291 | 307 | 168 | 188 | 188 | 204 | 232 | 234 | 240 | 246 | 249 | 255 | 209 | 211 | 240 | 252 | 182 | 182 | 236 | 250 | 250 | 254 | 166 | 168 | 151 | 153 | 264 | 264 | 176 | 180 | 322 | 322 | 85 | 89 | 135 | 144 | 163 | 177 | 366 | 375 |
COJONATA | Ron-2 | 291 | 291 | 184 | 188 | 174 | 188 | 228 | 234 | 236 | 240 | 243 | 255 | 209 | 209 | 240 | 264 | 182 | 194 | 250 | 250 | 250 | 270 | 166 | 168 | 153 | 153 | 264 | 264 | 176 | 184 | 322 | 322 | 83 | 85 | 144 | 146 | 159 | 163 | 358 | 366 |
CORNICHÓN BLANC | Ins-2, Pla-1, Rot-2 | 291 | 291 | 166 | 184 | 168 | 204 | 234 | 244 | 244 | 246 | 249 | 265 | 209 | 213 | 238 | 246 | 180 | 182 | 246 | 260 | 256 | 260 | 160 | 166 | 149 | 153 | 264 | 264 | 182 | 196 | 318 | 318 | 89 | 95 | 144 | 149 | 173 | 181 | 348 | 358 |
DONA MARÍA | Ins-4 | 291 | 291 | 166 | 184 | 190 | 206 | 224 | 226 | 236 | 248 | 255 | 255 | 209 | 213 | 246 | 252 | 186 | 194 | 236 | 270 | 256 | 262 | 166 | 178 | 149 | 151 | 264 | 264 | 174 | 188 | 318 | 322 | 83 | 85 | 133 | 149 | 163 | 175 | 362 | 375 |
IMPERIAL NAPOLEÓN | Ins-3 | 291 | 295 | 166 | 188 | 188 | 190 | 232 | 236 | 246 | 248 | 249 | 255 | 209 | 211 | 238 | 252 | 184 | 194 | 246 | 250 | 254 | 270 | 166 | 166 | 153 | 153 | 264 | 264 | 184 | 186 | 322 | 322 | 85 | 89 | 131 | 133 | 153 | 161 | 362 | 366 |
JACQUEZ | Alb-2 | 289 | 291 | 178 | 184 | 184 | 184 | 226 | 240 | 236 | 238 | 237 | 249 | 209 | 217 | 254 | 256 | 180 | 190 | 232 | 238 | 250 | 250 | 166 | 166 | 149 | 151 | 262 | 270 | 176 | 182 | 316 | 318 | 85 | 85 | 137 | 142 | 159 | 171 | 334 | 364 |
JAÉN TINTO | Com-2, Lau-2, Lau-7 | 291 | 291 | 184 | 188 | 174 | 188 | 232 | 238 | 236 | 240 | 249 | 249 | 209 | 209 | 240 | 240 | 182 | 190 | 246 | 250 | 254 | 256 | 166 | 168 | 151 | 153 | 264 | 264 | 180 | 192 | 318 | 322 | 85 | 89 | 131 | 144 | 167 | 177 | 362 | 366 |
LISTÁN PRIETO | Ron-4 | 291 | 291 | 184 | 184 | 168 | 174 | 226 | 238 | 236 | 246 | 243 | 249 | 209 | 209 | 238 | 240 | 186 | 190 | 236 | 246 | 254 | 256 | 166 | 168 | 151 | 151 | 256 | 264 | 176 | 192 | 318 | 322 | 85 | 89 | 131 | 133 | 163 | 167 | 362 | 364 |
MANTEUDO | Chu-1, Man-1, Rot-1 | 291 | 307 | 184 | 184 | 168 | 176 | 220 | 224 | 236 | 246 | 243 | 265 | 209 | 211 | 252 | 252 | 182 | 182 | 246 | 246 | 270 | 270 | 166 | 168 | 151 | 151 | 264 | 264 | 176 | 176 | 322 | 322 | 85 | 89 | 142 | 142 | 163 | 167 | 366 | 375 |
MOLINERA | Ins-1 | 291 | 291 | 186 | 188 | 168 | 188 | 232 | 236 | 240 | 246 | 249 | 249 | 211 | 211 | 240 | 252 | 182 | 194 | 236 | 260 | 250 | 270 | 166 | 168 | 151 | 153 | 264 | 264 | 186 | 190 | 318 | 322 | 85 | 89 | 135 | 144 | 161 | 163 | 372 | 375 |
PEDRO XIMENES | Chu-5 | 291 | 307 | 168 | 188 | 168 | 174 | 234 | 238 | 236 | 236 | 243 | 249 | 209 | 213 | 240 | 246 | 182 | 186 | 260 | 266 | 248 | 270 | 166 | 166 | 149 | 153 | 264 | 264 | 176 | 188 | 322 | 322 | 89 | 89 | 131 | 144 | 163 | 177 | 364 | 366 |
ROAL | Chu-4, Man-2 | 291 | 307 | 168 | 184 | 204 | 206 | 234 | 236 | 246 | 250 | 255 | 255 | 209 | 209 | 240 | 254 | 182 | 184 | 246 | 246 | 250 | 254 | 168 | 168 | 151 | 153 | 264 | 264 | 176 | 180 | 318 | 322 | 85 | 89 | 135 | 142 | 163 | 167 | 358 | 366 |
ROME TINTO | Com-4 | 291 | 295 | 184 | 188 | 188 | 190 | 236 | 238 | 236 | 236 | 243 | 249 | 209 | 209 | 240 | 252 | 182 | 194 | 238 | 260 | 254 | 270 | 166 | 166 | 153 | 153 | 264 | 264 | 176 | 190 | 318 | 326 | 83 | 89 | 135 | 144 | 163 | 171 | 366 | 375 |
TINTO VELASCO | Lau-1, Lau-14, Lau-15, Lau-18, Lau-19 | 291 | 291 | 172 | 184 | 188 | 206 | 228 | 236 | 232 | 250 | 255 | 255 | 209 | 215 | 238 | 238 | 180 | 186 | 250 | 262 | 250 | 250 | 164 | 166 | 151 | 151 | 264 | 264 | 184 | 190 | 322 | 322 | 89 | 89 | 131 | 131 | 159 | 159 | 358 | 375 |
XARELLO | Lau-9 | 291 | 295 | 184 | 184 | 168 | 180 | 234 | 238 | 236 | 240 | 249 | 253 | 209 | 209 | 238 | 252 | 182 | 190 | 238 | 260 | 248 | 254 | 166 | 168 | 151 | 153 | 264 | 264 | 190 | 196 | 322 | 326 | 85 | 89 | 131 | 142 | 161 | 163 | 360 | 372 |
Unknown 1 * | Can-1 | 291 | 293 | 174 | 188 | 190 | 190 | 226 | 228 | 240 | 260 | 249 | 255 | 209 | 209 | 240 | 254 | 184 | 194 | 238 | 262 | 250 | 254 | 144 | 166 | 151 | 153 | 264 | 264 | 180 | 180 | 318 | 326 | 85 | 89 | 131 | 144 | 153 | 153 | 358 | 368 |
Unknown 2 * | Com-3 | 291 | 291 | 166 | 188 | 190 | 206 | 228 | 236 | 238 | 246 | 249 | 255 | 209 | 213 | 246 | 254 | 182 | 194 | 246 | 260 | 270 | 270 | 166 | 166 | 151 | 153 | 264 | 264 | 176 | 190 | 318 | 322 | 83 | 83 | 131 | 135 | 153 | 163 | 375 | 375 |
Unknown 3 * | Lau-3, Lau-4, Lau-16 | 291 | 307 | 168 | 188 | 174 | 176 | 226 | 234 | 236 | 246 | 243 | 255 | 209 | 217 | 240 | 240 | 182 | 186 | 238 | 250 | 254 | 270 | 166 | 166 | 151 | 151 | 264 | 264 | 180 | 192 | 318 | 322 | 83 | 89 | 131 | 131 | 153 | 171 | 364 | 366 |
Unknown 4 * | Lau-11 | 289 | 295 | 172 | 184 | 180 | 188 | 224 | 226 | 230 | 254 | 255 | 255 | 209 | 213 | 238 | 252 | 186 | 190 | 250 | 262 | 250 | 254 | 150 | 164 | 151 | 153 | 264 | 264 | 174 | 190 | 316 | 316 | 85 | 89 | 131 | 131 | 159 | 161 | 364 | 375 |
Unknown 5 * | Man-5 | 291 | 291 | 166 | 188 | 204 | 204 | 226 | 234 | 244 | 246 | 249 | 265 | 209 | 221 | 244 | 248 | 180 | 186 | 260 | 260 | 248 | 270 | 166 | 176 | 151 | 153 | 264 | 264 | 184 | 192 | 320 | 328 | 85 | 87 | 142 | 151 | 153 | 161 | 358 | 358 |
Unknown 6 * | Ron-3 | 291 | 307 | 184 | 188 | 168 | 174 | 232 | 234 | 236 | 240 | 249 | 255 | 209 | 209 | 240 | 240 | 182 | 182 | 236 | 250 | 238 | 270 | 166 | 168 | 151 | 153 | 264 | 264 | 186 | 188 | 318 | 326 | 85 | 89 | 131 | 144 | 161 | 177 | 364 | 372 |
Unknown 7 * | Ron-5 | 291 | 307 | 184 | 188 | 174 | 206 | 234 | 234 | 236 | 246 | 255 | 255 | 209 | 209 | 240 | 254 | 182 | 186 | 246 | 250 | 238 | 254 | 168 | 168 | 151 | 153 | 264 | 264 | 188 | 188 | 316 | 318 | 85 | 89 | 131 | 142 | 167 | 177 | 358 | 364 |
Unknown 8 * | Ron-6 | 291 | 307 | 184 | 184 | 174 | 188 | 236 | 238 | 232 | 240 | 249 | 249 | 209 | 211 | 252 | 252 | 182 | 186 | 260 | 262 | 250 | 270 | 166 | 166 | 151 | 153 | 264 | 264 | 176 | 186 | 318 | 322 | 87 | 89 | 131 | 142 | 153 | 163 | 366 | 375 |
CABERNET SAUVIGNON ** | 291 | 291 | 184 | 184 | 174 | 178 | 228 | 238 | 236 | 236 | 249 | 257 | 209 | 217 | 238 | 246 | 176 | 190 | 236 | 238 | 238 | 238 | 166 | 182 | 153 | 153 | 264 | 268 | 188 | 188 | 306 | 314 | 83 | 89 | 137 | 151 | 163 | 163 | 364 | 372 | |
SYRAH ** | 291 | 295 | 166 | 188 | 174 | 206 | 224 | 228 | 236 | 236 | 247 | 265 | 209 | 215 | 240 | 240 | 190 | 192 | 220 | 230 | 238 | 270 | 164 | 166 | 151 | 153 | 264 | 264 | 182 | 190 | 318 | 318 | 89 | 89 | 131 | 131 | 163 | 165 | 362 | 382 |
Locus | Na | He | Ho | r | PIC | PI |
---|---|---|---|---|---|---|
VVIB01 | 5 | 0.546 | 0.700 | −0.100 | 0.5024 | 0.250 |
VMC1b11 | 9 | 0.709 | 0.800 | −0.053 | 0.6703 | 0.123 |
VMC4F31 | 9 | 0.863 | 0.833 | 0.016 | 0.8481 | 0.034 |
VVMD5 | 10 | 0.861 | 0.967 | −0.057 | 0.8453 | 0.035 |
VVMD7 | 12 | 0.793 | 0.900 | −0.060 | 0.5866 | 0.069 |
VVMD21 | 6 | 0.691 | 0.633 | 0.034 | 0.6368 | 0.150 |
VVMD24 | 6 | 0.541 | 0.600 | −0.038 | 0.5097 | 0.242 |
VVMD25 | 9 | 0.786 | 0.733 | 0.029 | 0.7852 | 0.075 |
VVMD27 | 6 | 0.768 | 0.867 | −0.056 | 0.7676 | 0.086 |
VVMD28 | 10 | 0.831 | 0.800 | 0.017 | 0.8089 | 0.050 |
VVMD32 | 8 | 0.790 | 0.867 | −0.043 | 0.7593 | 0.075 |
VVIH54 | 8 | 0.607 | 0.667 | −0.037 | 0.5600 | 0.201 |
VVIN16 | 5 | 0.585 | 0.733 | −0.094 | 0.5009 | 0.256 |
VVIN73 | 4 | 0.185 | 0.167 | 0.015 | 0.1769 | 0.672 |
VVIP31 | 10 | 0.866 | 0.867 | −0.001 | 0.8522 | 0.031 |
VVIP60 | 6 | 0.688 | 0.600 | 0.052 | 0.6369 | 0.149 |
VVIQ52 | 5 | 0.677 | 0.833 | −0.093 | 0.6143 | 0.167 |
VVS2 | 9 | 0.817 | 0.867 | −0.028 | 0.7938 | 0.057 |
VVIV37 | 11 | 0.846 | 0.900 | −0.030 | 0.8132 | 0.040 |
VVIV67 | 11 | 0.847 | 0.933 | −0.047 | 0.7798 | 0.042 |
TOTAL | 159 | 1.74 × 10−19 | ||||
MEAN | 7.95 | 0.715 | 0.763 | −0.029 | 0.67241 | 0.140 |
Accession Code | Cultivars a | Utilization b | Country of Origin of the Variety c |
---|---|---|---|
Alb-1, Chu-3, Lau-12, Lau-13, Lau-10, Man-3 | CAYETANA BLANCA | W-T | Spain |
Alb-2 | JACQUEZ | W | United States |
Can-1 | Unknown 1 * | ||
Chu-1, Man-1, Rot-1 | MANTEUDO | W | Portugal |
Chu-2 | BEBA | W-T | Spain |
Chu-4, Man-2 | ROAL | W-T | Portugal |
Chu-5 | PEDRO XIMENES | W | Spain |
Com-2, Lau-2, Lau-7 | JAEN NEGRO | W-T | Spain |
Com-3 | Unknown 2 * | ||
Com-4 | ROME TINTO | ||
Ins-1 | MOLINERA | W-T | Spain |
Ins-2, Pla-1, Rot-2 | CORNICHON BLANC | W-T | Italy |
Ins-3 | IMPERIAL NAPOLEON | T | Spain |
Ins-4 | DONA MARIA | W-T | Portugal |
Lau-1, Lau-14, Lau-15, Lau-18, Lau-19 | TINTO VELASCO | W-T | Spain |
Lau-3, Lau-4, Lau-16 | Unknown 3 * | ||
Lau-5, Lau-6 | AHMEUR BOU AHMEUR | W-T | Algeria |
Lau-8 | ALICANTE HENRI BOUSCHET | W | France |
Lau-9 | XARELLO | W | Spain |
Lau-11 | Unknown 4 * | ||
Lau-17 | CARIGNAN NOIR | W | France |
Man-4 | AFUS ALI | W-T | Lebanon |
Man-5 | Unknown 5 * | ||
Pla-2 | ATTIKA SEEDLESS | T | Greece |
Ron-1 | BOBAL | W | Spain |
Ron-2 | COJONATA | W | Spain |
Ron-3 | Unknown 6 * | ||
Ron-4 | LISTAN PRIETO | W-T | Spain |
Ron-5 | Unknown 7 * | ||
Ron-6 | Unknown 8 * | ||
CABERNET SAUVIGNON ** | W | France | |
SYRAH ** | W | France |
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Jiménez-Cantizano, A.; Puig-Pujol, A.; Arroyo-García, R. Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers. Horticulturae 2023, 9, 316. https://doi.org/10.3390/horticulturae9030316
Jiménez-Cantizano A, Puig-Pujol A, Arroyo-García R. Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers. Horticulturae. 2023; 9(3):316. https://doi.org/10.3390/horticulturae9030316
Chicago/Turabian StyleJiménez-Cantizano, Ana, Anna Puig-Pujol, and Rosa Arroyo-García. 2023. "Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers" Horticulturae 9, no. 3: 316. https://doi.org/10.3390/horticulturae9030316
APA StyleJiménez-Cantizano, A., Puig-Pujol, A., & Arroyo-García, R. (2023). Identification of Vitis vinifera L. Local Cultivars Recovered in Andalusia (Spain) by Using Microsatellite Markers. Horticulturae, 9(3), 316. https://doi.org/10.3390/horticulturae9030316