Phylogenetic and Morphological Perspectives on Crepidotus subg. Dochmiopus: Exploratively Unveiling Hidden Diversity in China
Abstract
:1. Introduction
2. Materials and Methods
2.1. Specimens and Morphological Examination
2.2. DNA Extraction, PCR Amplification and DNA Sequencing
2.3. Sequence Alignment and Molecular Phylogeny
3. Results
3.1. Phylogenetic Analysis
3.2. Taxonomy
4. Discussion
Key to the elongated-spored species of C. subg. Dochmiopus known in China | |
1 Basidiospores smooth to nearly smooth | 2 |
1 Basidiospores ornamented | 10 |
2 Pileocystidia present | C. autochthonus |
2 Pileocystidia absent | 3 |
3 Pileipellis gelatinous | C. betulae |
3 Pileipellis non-gelatinous | 4 |
4 Cheilocystidia vine-shaped | C. trichocraspedotus |
4 Cheilocystidia not vine-shaped | 5 |
5 Pileipellis hyphae clampless | C. albidus |
5 Pileipellis hyphae clamped | 6 |
6 Lamellae edge not fimbriate | 7 |
6 Lamellae edge fimbriate | 8 |
7 Pileipellis a cutis | C. caspari |
7 Pileipellis a tomentose | C. lamellomaculatus |
8 Basidiospores width < 4.5 μm | C. albissimus |
8 Basidiospores width ≥ 4.5 μm | 9 |
9 Pileipellis a cutis, pileus greyish white to silver-grey | C. occidentalis |
9 Pileipellis a trichoderm, pileus white to light orange-yellow | C. ulmicola |
10 Inhabit on living plants | C. herbaceus |
10 Inhabit on rotten branches and woods | 11 |
11 Pileus reddish | C. reticulatus |
11 Pileus not reddish | 12 |
12 Pleurocystidia present | C. luteicolor |
12 Pleurocystidia absent | 13 |
13 Pileocystidia present | 14 |
13 Pileocystidia absent | 15 |
14 Pileus buff yellow to apricot yellow | C. succineus |
14 Pileus white | C. vulgaris |
15 Basidiospores subglobose to ellipsoid, Qm ≤ 1.60 | 16 |
15 Basidiospores amygdaliform, oblong to cylindrical, Qm > 1.60 | 26 |
16 Pileus brown, at point of attachment smooth | C. payettensis |
16 Pileus not brown, at point of attachment villous, fibrillose or tomentose | 17 |
17 Pileus surface smooth | 18 |
17 Pileus surface not smooth | 20 |
18 Pileus translucent striate | C. capitatocystidiatus |
18 Pileus not translucent striate | 19 |
19 Lamellae edge not fimbriate, cheilocystidia apex bifurcate | C. furcaticystidiosus |
19 Lamellae edge fimbriate, cheilocystidia apex branched or stag antlers | C. macedonicus |
20 Pileus hygrophanous | 21 |
20 Pileus non-hygrophanous | 22 |
21 Cheilocystidia lageniform | C. lutescens |
21 Cheilocystidia narrowly clavate to narrowly utriform | C. croceotinctus |
22 Pileipellis with incrusted hyphae | 23 |
22 Pileipellis without incrusted hyphae | 24 |
23 Cheilocystidia clavate or ventricose, sessile | C. kauffmanii |
23 Cheilocystidia clavate to narrowly clavate, pruinose stipe | C. clavocystidiatus |
24 Pileus orange-yellow to brownish-yellow | C. yuanchui |
24 Pileus white to cream | 25 |
25 Basidiospores subglobose to broadly ellipsoid, Q ≤ 1.30 | C. cesatii |
25 Basidiospores ellipsoid to ovoid, Q > 1.30 | C. subverrucisporus |
26 Pileus light smoky or rusty brown | C. herbarum |
26 Pileus white to light yellow or orange | 27 |
27 Basidiospores length ≥ 8.0 μm | C. luteolus |
27 Basidiospores length < 8.0 μm | 28 |
28 Cheilocystidia with a long cylindrical protuberance at apex | C. tomentellus |
28 Cheilocystidia without a long cylindrical protuberance at apex | 29 |
29 Cheilocystidia filiform, narrowly lageniform, at times diverticular or knobby in the upper portion | C. neotrichocystis |
29 Cheilocystidia clavate, utriform, strangulated, sometimes stag antlers | C. variabilis |
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Taxa | Voucher/Strain No. | Location | GenBank Sequence ID | Reference | |
---|---|---|---|---|---|
ITS | nLSU | ||||
C. affinis | PDD:72848 | New Zealand | KY827291 | – | [34] |
C. alabamensis | TBGT15610 | India | MK459545 | MK459543 | [34] |
C. albolanatus | PDD:72865 | New Zealand | KY827292 | – | [34] |
C. applanatus | SLO 2534 | Slovakia | OM832521 | OM832556 | [35] |
C. applanatus | SLO 2539 | Slovakia | OM832523 | OM832558 | [35] |
C. applanatus | SLO 2551 | Slovakia | OM832526 | OM832560 | [35] |
C. asiaticus | TJB9995 | Thailand | MF077337 | MF077336 | [8] |
C. asiaticus | TJB10018 | Thailand | MF077339 | MF077338 | [8] |
C. asiaticus | FFAAS0336 | China | MW580871 | – | Direct Sub. |
C. asiaticus | FFAAS0338 | China | MW580872 | – | Direct Sub. |
C. brunnescens | MCA864 | Not indicated | – | AF367936 | Unpublished |
C. calolepis | WU 28902 | Hungary | KF879617 | – | [36] |
C. calolepis | iNaturalist 142786935 | USA | OR824560 | – | Unpublished |
C. calolepis | 314298 | USA | MH188448 | – | Direct Sub. |
C. capitatocystidiatus | FFAAS1310 Holotype | China | PQ061270 | PQ061255 | This study |
C. capitatocystidiatus | FFAAS1311 | China | PQ061271 | PQ061256 | This study |
C. capitatocystidiatus | FFAAS1312 | China | PQ061272 | PQ061257 | This study |
C. caspari | FFAAS0342 | China | MZ401361 | MW581521 | [4] |
C. cinnabarinus | MCA387 | USA | – | AF205686 | [37] |
C. circinatus | MushroomObserver. org/307011 | USA | MH087459 | – | Direct Sub. |
C. circinatus | iNAT:66988897 | USA | OQ147188 | – | Direct Sub. |
C. circinatus | iNaturalist 141511315 | USA | OR824682 | – | Direct Sub. |
C. clavocystidiatus | FFAAS1316 Holotype | China | PQ061276 | PQ061261 | This study |
C. clavocystidiatus | FFAAS1317 | China | PQ061277 | PQ061262 | This study |
C. clavocystidiatus | FFAAS1318 | China | PQ061278 | PQ061263 | This study |
C. clavocystidiatus | FFAAS1319 | China | PQ061279 | PQ061264 | This study |
C. croceotinctus | iNat31834012 | USA | MN498116 | – | Direct Sub. |
C. croceotinctus | S.D. Russell ONT iNaturalist # 126570732 | USA | OP470431 | – | Direct Sub. |
C. croceotinctus | S.D. Russell ONT iNaturalist 131145003 | USA | OP549098 | – | Direct Sub. |
C. crocophyllus | SLO 2433 | Slovakia | OM832529 | OM832562 | [35] |
C. crocophyllus | SLO 2588 | Slovakia | OM832530 | OM832563 | [35] |
C. dentatus | HMJAU37097 | China | MH320736 | – | [12] |
C. dentatus | HMJAU37161 | China | MH320737 | – | [12] |
C. epibryus | IBNR 1997/0948 | Russia | – | AF367934 | [38] |
C. epibryus | NL-5379 | Hungary | – | MK277884 | [39] |
C. exiguus | TBGT17176 | India | – | MK567974 | [11] |
C. flavobrunneus | TBGT15841 | India | – | MK567981 | [11] |
C. fragilis | MCA 904 | USA | – | AF367931 | [38] |
C. fraxinicola | OKM26739 | USA | – | AF205699 | [37] |
C. fraxinicola | OKM26748 | USA | – | AF205697 | [37] |
C. herbaceus | HMJAU37009 | China | MW080327 | – | [20] |
C. herbaceus | HMJAU37025 | China | MW080326 | – | [20] |
C. heterocystidiosus | HMJAU37054 | China | MF461342 | – | [12] |
C. heterocystidiosus | HMJAU37034 | China | MF461344 | – | [12] |
C. inhonestus | MCA638 | Not indicated | – | AF205704 | [40] |
C. innuopurpureus | MEL 2503290 | Australia | NR_182391 | MZ870346 | [41] |
C. iqbalii | MU248 | Pakistan | OQ672617 | – | Direct Sub. |
C. iqbalii | LAH36654 | Pakistan | MT973498 | MW888515 | [13] |
C. kangoliformis | BAP 664 | São Tomé and Príncipe | KX017199 | – | [42] |
C. kauffmanii | MIN-F-0905412 | USA | – | MK277887 | [39] |
C. lamellomaculatus | FFAAS1306 | China | PQ061266 | PQ061251 | This study |
C. lamellomaculatus | FFAAS1309 | China | PQ061269 | PQ061254 | This study |
C. lamellomaculatus | FFAAS1308 | China | PQ061268 | PQ061253 | This study |
C. lamellomaculatus | FFAAS1307 | China | PQ061267 | PQ061252 | This study |
C. lamellomaculatus | FFAAS1305 Holotype | China | PQ061265 | PQ061250 | This study |
C. lanuginosus | OKM27331 | USA | – | AF367940 | Unpublished |
C. lateralipes | PDD:72508 | New Zealand | KY827293 | – | [34] |
C. lateralipes | PDD:72571 | New Zealand | KY827294 | – | [34] |
C. lateralipes | PDD:98270 | New Zealand | KY827295 | – | [34] |
C. luteolus | 16834 | Italy | JF907963 | – | [43] |
C. lutescens | HMJAU 21976 | China | KU762016 | – | [7] |
C. lutescens | HMJAU 37002 | China | KU762017 | – | [7] |
C. macedonicus | PV773 | Hungary | MH780921 | – | [44] |
C. macedonicus | DB3859 | Hungary | MH780922 | – | [44] |
C. macedonicus | MB19102501 | Italy | PP131267 | PP125747 | Direct Sub. |
C. malachioides | SLO 2578 | Slovakia | OM832538 | OM832568 | [35] |
C. malachioides | SLO 2391 | Slovakia | OM832536 | OM832567 | [35] |
C. malachius | SLO 2541 | Slovakia | OM832546 | OM832575 | [35] |
C. malachius | SLO 2091 | Slovakia | OM832541 | OM832571 | [35] |
C. malachius | SLO 2530 | Slovakia | OM832543 | OM832573 | [35] |
C. mollis | OKM26279 | USA | – | AF205677 | [37] |
C. mollis | PBM 1036 (WTU) | USA | – | DQ986293 | [45] |
C. neotrichocystis | CS1150 | Malta | OL672745 | OL672702 | [46] |
C. nephrodes | OKM25896 | Not indicated | – | AF205693 | [37] |
C. nephrodes | MCA189 | Not indicated | – | AF205670 | [37] |
C. novae-zealandiae | PDD:95850 | New Zealand | HQ533046 | – | Direct Sub. |
C. nyssicola | S.D. Russell MycoMap # 7426 | USA | MN906237 | – | Direct Sub. |
C. nyssicola | S.D. Russell MycoMap # 7399 | USA | MN906236 | – | Direct Sub. |
C. occidentalis | MUOB:367585 | USA | OK376745 | – | Direct Sub. |
C. palodensis | TBGT16716 | India | MH844890 | MH310743 | [10] |
C. praecipuus | PDD:72624 | New Zealand | KY827312 | – | [34] |
C. praecipuus | PDD:72481 | New Zealand | KY827311 | – | [34] |
C. pseudomollis | HMJAU37158 | China | MH320739 | – | [12] |
C. pseudomollis | HMJAU37163 | China | MH320740 | – | [12] |
C. pseudomollis | HMJAU37125 | China | MH320738 | – | [12] |
C. reticulatus | HMJAU37089 | China | MF461346 | – | Direct Sub. |
C. roseus | TBGT15507 | India | MK567976 | MK567977 | [11] |
C. rufidulus | PDD 98272 | New Zealand | NR_159823 | – | [34] |
C. rufofloccosus | PDD 72601 | New Zealand | NR_159822 | – | [34] |
C. sphaerosporus | 11253 | Italy | JF907960 | – | Direct Sub. |
C. sphaerosporus | HMAS 290002 | China | MK966514 | – | Direct Sub. |
C. stenocystis | PRM911279 | Czech Republic | MF621030 | MF621024 | [47] |
C. stenocystis | SLO 481 | Slovakia | OM832552 | – | [35] |
C. stenocystis | SLO 2557 | Slovakia | OM832553 | OM832581 | [35] |
C. striatus | HMJAU37087 | China | MH320742 | – | [12] |
C. striatus | HMJAU37076 | China | MH320741 | – | [12] |
C. subfulviceps | BCN SCM B-5144 | Spain | – | FJ947116 | [48] |
C. subfulviceps | BCN SCM B-5138 | Spain | – | FJ947117 | [48] |
C. subverrucisporus | MCA774 | USA | – | AF367948 | [19] |
C. succineus | FFAAS1313 Holotype | China | PQ061273 | PQ061258 | This study |
C. succineus | FFAAS1314 | China | PQ061274 | PQ061259 | This study |
C. succineus | FFAAS1315 | China | PQ061275 | PQ061260 | This study |
C. tennesseensis | TENN 29144 | USA | FJ601806 | – | Unpublished |
C. tennesseensis | LRH29144 | USA | NR_119720 | GQ892981 | [49] |
C. tobolensis | TCSS UB RAS9477 | Russia | MK522392 | – | [50] |
C. tobolensis | LE 287655 | Russia | MK522393 | MK560762 | [50] |
C. tobolensis | LE313671 | Russia | OL739885 | – | [51] |
C. tortus | TBGT17194 | India | MK462161 | MK462162 | [11] |
C. trichocraspedotus | HMJAU37250 | China | MH320744 | – | [12] |
C. trichocraspedotus | HMJAU37138 | China | MH320743 | – | [12] |
C. trulliformis | PDD:98274 | New Zealand | KY827298 | – | [34] |
C. ulmicola | HMJAU37011 | China | KX456184 | – | [20] |
C. ulmicola | HMJAU37027 | China | MW080328 | – | [20] |
C. variabilis | SLO 2021 | Slovakia | MT055889 | OM832585 | [18] |
C. variabilis | SLO 2018 | Slovakia | MT055890 | OM832583 | [18] |
C. variabilis | SLO 2423 | Slovakia | MT055887 | OM832584 | [18] |
C. versutus | MCA381 | USA | – | AF205683 | [37] |
C. versutus | MCA250 | USA | – | AF205695 | [37] |
C. volubilis | TBGT15648 | India | MH845231 | MH310742 | [11] |
C. wasseri | LE 287679 | Russia | MW722981 | MW723022 | [52] |
C. wasseri | MO500187 | USA | OR203555 | – | Direct Sub. |
C. yuanchui | FFAAS0340 | China | MZ401362 | – | [4] |
C. yuanchui | FFAAS0341 | China | MZ401363 | MW581519 | [4] |
N. dominicanus | MCVE 26928 | Dominican Republic | JN033216 | JN033217 | [53] |
N. echinospermus | AH45884 | Brazil | KY468512 | KY468511 | Direct Sub. |
N. echinospermus | MPM 2886 | Brazil | – | JN033222 | [53] |
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Han, M.; Na, Q.; Wei, R.; Zeng, H.; Hu, Y.; Zhang, L.; Du, J.; Zou, L.; Tang, W.; Cheng, X.; et al. Phylogenetic and Morphological Perspectives on Crepidotus subg. Dochmiopus: Exploratively Unveiling Hidden Diversity in China. J. Fungi 2024, 10, 710. https://doi.org/10.3390/jof10100710
Han M, Na Q, Wei R, Zeng H, Hu Y, Zhang L, Du J, Zou L, Tang W, Cheng X, et al. Phylogenetic and Morphological Perspectives on Crepidotus subg. Dochmiopus: Exploratively Unveiling Hidden Diversity in China. Journal of Fungi. 2024; 10(10):710. https://doi.org/10.3390/jof10100710
Chicago/Turabian StyleHan, Menghui, Qin Na, Renxiu Wei, Hui Zeng, Yaping Hu, Libo Zhang, Jinhong Du, Li Zou, Weimin Tang, Xianhao Cheng, and et al. 2024. "Phylogenetic and Morphological Perspectives on Crepidotus subg. Dochmiopus: Exploratively Unveiling Hidden Diversity in China" Journal of Fungi 10, no. 10: 710. https://doi.org/10.3390/jof10100710
APA StyleHan, M., Na, Q., Wei, R., Zeng, H., Hu, Y., Zhang, L., Du, J., Zou, L., Tang, W., Cheng, X., & Ge, Y. (2024). Phylogenetic and Morphological Perspectives on Crepidotus subg. Dochmiopus: Exploratively Unveiling Hidden Diversity in China. Journal of Fungi, 10(10), 710. https://doi.org/10.3390/jof10100710