Virome Profiling of an Amur leopard cat Reveals Multiple Anelloviruses and a Bocaparvovirus
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sample Collection and Species Identification
2.2. Sample Pretreatment and High-Throughput Sequencing
2.3. Viral Metagenomic Analysis
2.4. PCR Validation
2.5. Genomic Characterization and Phylogenetic Analyses
3. Results
3.1. Overview of the Virome
3.2. Genomic and Phylogenetic Characterization of Anelloviruses
3.3. Genomic and Phylogenetic Characterization of Parvovirus
4. Discussion
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
- Ranjan, R. Shooting at the poachers while the rhinos drown: Managing short-and long-term threats to endangered wildlife in conservation reserves. Nat. Resour. Model. 2019, 32, e12188. [Google Scholar] [CrossRef] [Green Version]
- Macdonald, D.; Harrington, L.; Moorhouse, T.; D’Cruze, N. Trading Animal Lives: Ten Tricky Issues on the Road to Protecting Commodified Wild Animals. Bioscience 2021, 71, 846–860. [Google Scholar] [CrossRef] [PubMed]
- Smith, K.F.; Sax, D.F.; Lafferty, K.D. Evidence for the role of infectious disease in species extinction and endangerment. Conserv. Biol. 2006, 20, 1349–1357. [Google Scholar] [CrossRef] [PubMed]
- Yu, Z.; Wang, T.; Sun, H.; Xia, Z.; Zhang, K.; Chu, D.; Xu, Y.; Xin, Y.; Xu, W.; Cheng, K.; et al. Contagious caprine pleuropneumonia in endangered Tibetan antelope, China, 2012. Emerg. Infect. Dis. 2013, 19, 2051–2053. [Google Scholar] [CrossRef] [PubMed] [Green Version]
- Zukal, J.; Bandouchova, H.; Brichta, J.; Cmokova, A.; Jaron, K.S.; Kolarik, M.; Kovacova, V.; Kubátová, A.; Nováková, A.; Orlov, O.; et al. Corrigendum: White-nose syndrome without borders: Pseudogymnoascus destructans infection tolerated in Europe and Palearctic Asia but not in North America. Sci. Rep. 2016, 6, 26049. [Google Scholar] [CrossRef] [Green Version]
- Jones, K.; Patel, N.; Levy, M.; Storeygard, A.; Balk, D.; Gittleman, J.; Daszak, P. Global trends in emerging infectious diseases. Nature 2008, 451, 990–993. [Google Scholar] [CrossRef]
- Letko, M.; Seifert, S.; Olival, K.; Plowright, R.; Munster, V. Bat-borne virus diversity, spillover and emergence. Nat. Rev. Microbiol. 2020, 18, 461–471. [Google Scholar] [CrossRef]
- Feng, Y.; Wang, Y.; Xu, W.; Tu, Z.; Liu, T.; Huo, M.; Liu, Y.; Gong, W.; Zeng, Z.; Wang, W.; et al. Animal Rabies Surveillance, China, 2004–2018. Emerg. Infect. Dis. 2020, 26, 2825–2834. [Google Scholar] [CrossRef]
- Cardoso, P.; Stoev, P.; Georgiev, T.; Senderov, V.; Penev, L. Species Conservation Profiles compliant with the IUCN Red List of Threatened Species. Biodivers. Data J. 2016, 4, e10356. [Google Scholar] [CrossRef] [Green Version]
- Hebert, P.; Cywinska, A.; Ball, S.; deWaard, J. Biological identifications through DNA barcodes. Proc. Biol. Sci. 2003, 270, 313–321. [Google Scholar] [CrossRef]
- Sun, Y.; Qu, Y.; Yan, X.; Yan, G.; Chen, J.; Wang, G.; Zhao, Z.; Liu, Y.; Tu, C.; He, B. Comprehensive Evaluation of RNA and DNA Viromic Methods Based on Species Richness and Abundance Analyses Using Marmot Rectal Samples. mSystems 2022, 7, e0043022. [Google Scholar] [CrossRef]
- Chen, J.; Sun, Y.; Yan, X.; Ren, Z.; Wang, G.; Liu, Y.; Zhao, Z.; Yi, L.; Tu, C.; He, B. Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis. mSystems 2022, 7, e00907-22. [Google Scholar] [CrossRef]
- Daneman, R.; Prat, A. The blood-brain barrier. Cold Spring Harb. Perspect. Biol. 2015, 7, a020412. [Google Scholar] [CrossRef] [Green Version]
- Hino, S. TTV, a new human virus with single stranded circular DNA genome. Rev. Med. Virol. 2002, 12, 151–158. [Google Scholar] [CrossRef]
- Varsani, A.; Opriessnig, T.; Celer, V.; Maggi, F.; Okamoto, H.; Blomström, A.; Cadar, D.; Harrach, B.; Biagini, P.; Kraberger, S. Taxonomic update for mammalian anelloviruses (family Anelloviridae). Arch. Virol. 2021, 166, 2943–2953. [Google Scholar] [CrossRef]
- Manzin, A.; Mallus, F.; Macera, L.; Maggi, F.; Blois, S. Global impact of Torque teno virus infection in wild and domesticated animals. J. Infect. Dev. Ctries. 2015, 9, 562–570. [Google Scholar] [CrossRef]
- Manteufel, J.; Truyen, U. Animal bocaviruses: A brief review. Intervirology 2008, 51, 328–334. [Google Scholar] [CrossRef]
- Guido, M.; Tumolo, M.; Verri, T.; Romano, A.; Serio, F.; De Giorgi, M.; De Donno, A.; Bagordo, F.; Zizza, A. Human bocavirus: Current knowledge and future challenges. World J. Gastroenterol. 2016, 22, 8684–8697. [Google Scholar] [CrossRef]
- Wang, Y.; Guo, X.; Li, W.; Cui, Y.; Zhang, D.; Xu, F.; Jiang, S.; Zhou, T. Phylogenetic analysis and evolution of feline bocavirus in Anhui Province, eastern China. Comp. Immunol. Microbiol. Infect. Dis. 2021, 77, 101676. [Google Scholar] [CrossRef]
- Yi, S.; Niu, J.; Wang, H.; Dong, G.; Zhao, Y.; Dong, H.; Guo, Y.; Wang, K.; Hu, G. Detection and genetic characterization of feline bocavirus in Northeast China. Virol. J. 2018, 15, 125. [Google Scholar] [CrossRef]
- Liang, G.; Bushman, F.D. The human virome: Assembly, composition and host interactions. Nat. Rev. Microbiol. 2021, 19, 514–527. [Google Scholar] [CrossRef] [PubMed]
- Polster, S.; Lechmann, J.; Lienhard, J.; Peltzer, D.; Prähauser, B.; Bachofen, C.; Seehusen, F. First Report of TTSuV1 in Domestic Swiss Pigs. Viruses 2022, 14, 870. [Google Scholar] [CrossRef] [PubMed]
- Maggi, F.; Bendinelli, M. Human anelloviruses and the central nervous system. Rev. Med. Virol. 2010, 20, 392–407. [Google Scholar] [CrossRef] [PubMed]
- He, B.; Gong, W.; Yan, X.; Zhao, Z.; Yang, L.E.; Tan, Z.; Xu, L.; Zhu, A.; Zhang, J.; Rao, J.; et al. Viral metagenome-based precision surveillance of pig population at large scale reveals viromic signatures of sample types and influence of farming management on pig virome. mSystems 2021, 6, e00420–e00421. [Google Scholar] [CrossRef]
- Wang, L.; Tang, Q.; Liang, G. Rabies and rabies virus in wildlife in mainland China, 1990–2013. Int. J. Infect. Dis. 2014, 25, 122–129. [Google Scholar] [CrossRef] [Green Version]
- Wang, F.; Zhang, H.; Hou, L.; Yang, C.; Wen, Y. Advance of African swine fever virus in recent years. Res. Vet. Sci. 2021, 136, 535–539. [Google Scholar] [CrossRef]
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Liu, Y.; Sun, L.; Tu, Z.; Sun, S.; Sun, Y.; Yi, L.; Tu, C.; He, B. Virome Profiling of an Amur leopard cat Reveals Multiple Anelloviruses and a Bocaparvovirus. Vet. Sci. 2022, 9, 640. https://doi.org/10.3390/vetsci9110640
Liu Y, Sun L, Tu Z, Sun S, Sun Y, Yi L, Tu C, He B. Virome Profiling of an Amur leopard cat Reveals Multiple Anelloviruses and a Bocaparvovirus. Veterinary Sciences. 2022; 9(11):640. https://doi.org/10.3390/vetsci9110640
Chicago/Turabian StyleLiu, Yang, Lanshun Sun, Zhongzhong Tu, Sheng Sun, Yue Sun, Le Yi, Changchun Tu, and Biao He. 2022. "Virome Profiling of an Amur leopard cat Reveals Multiple Anelloviruses and a Bocaparvovirus" Veterinary Sciences 9, no. 11: 640. https://doi.org/10.3390/vetsci9110640