1. Introduction
In the modern era, livestock production has operated under escalating input costs and stringent sustainability constraints. Volatility in feed prices has intensified as climate change, competing land uses, and deforestation perturb global supplies of energy—and protein-rich feedstuffs. At the same time, European policy and consumer preferences are steering production toward healthier, more “sustainably produced” animal foods, and toward reduced on-farm antimicrobial inputs. The EU Farm-to-Fork agenda explicitly targets a 50% cut in sales of antimicrobials for farmed animals and aquaculture by 2030, while recent Eurobarometer work and allied surveys indicate that many consumers increasingly associate “healthy and sustainable” with low-pesticide, welfare-friendly, and lower-impact food chains [
1,
2,
3].
In this context, researchers have intensified the search for the development and utilization of unconventional feed, primarily affordable and locally available feed resources that can partially replace imported soybean meal and cereals while also conferring benefits for animals and consumers. Southern Europe—and Greece in particular—produces large volumes of agro-industrial by-products (AIBPs) from three emblematic sectors: olive oil production, winemaking, and cheese manufacture. The Mediterranean basin generates approximately 30 million m
3 of olive mill wastewater (OMW) annually. This effluent is rich in organic load and phenolics and, if mismanaged, is a significant pollutant, but is also a potential source of bioactive compounds [
4,
5]. Greece is among the world’s top olive oil producers, with around 430 thousand tons of olive oil per year processed in approximately 2800 mills—an industrial structure that underscores both the OMW burden and the valorization opportunity at the national level [
6]. Depending on extraction technology, one ton of olives can yield up to approximately 1.6 m
3 of OMW, again highlighting the magnitude of the stream that must be managed or valorized [
7]. Wine by-products represent a second major AIBP resource. Across Europe, grape pomace (skins, seeds, and residual pulp) typically accounts for roughly 20–30% of processed grape mass, contributing millions of tons of fibrous, phenolic-rich biomass annually. Greek case studies and the data from Greece are consistent with respect to this range and document substantial volumes from national wine regions [
8,
9,
10]. These lignocellulosic residues carry tannins and other polyphenols with antimicrobial and antioxidant properties but pose storage and handling challenges when used raw. Cheese processing ultimately produces large quantities of whey—the liquid fraction remaining after curd formation. Global whey output is commonly estimated at 145–200 million tons per year; unmanaged whey has very high biodegradability/total organic load numbers [high Biochemical Oxygen Demand/Chemical Oxygen Demand (BOD/COD)], making it an environmental liability but also a fermentable substrate in biorefineries and feed applications [
11,
12]. In Greece, where Feta, Protected Designation of Origin (PDO) dominates the cheese sector, 2021 production exceeded 130 thousand tons; given that approximately 10 L of whey are generated per kg of feta cheese, this single PDO category implies a production of more than 1.2–1.3 billion liters of whey annually—before accounting for other Greek cheeses—pointing to a substantial local feedstock for valorization (and, when de-proteinized, a source of solids useful in mixed silages) [
13,
14].
Despite their promise, the direct inclusion of these by-products in monogastric rations is technically challenging: high moisture, rapid spoilage, variable composition, anti-nutritional phenolics, and limited shelf life can compromise digestibility, palatability, and safety. Consequently, stabilization and “upgrading” via bioprocessing—ensiling, solid-state fermentation, and enzyme or microbial treatments—has become central to feed applications. Recent EU-Mediterranean work has shown that mixed-by-product silages (e.g., wheat straw, grape pomace, OMW, and cheese whey) can achieve desirable pH, lactic fermentation profiles, and preserved phenolics over 90 days, supporting their practicality as functional feed ingredients if well formulated [
15,
16,
17,
18].
Within this trajectory, a Greek research scientific group designed and optimized a novel mixed silage using locally abundant AIBPs—solids from olive mill wastewater and grape pomace, with the addition of de-proteinized feta cheese whey solids, arranged at approximately 60:20:20 (
w/w) and supported by a cereal co-substrate to guide lactic fermentation [
19]. In broiler chickens, dietary inclusion (5–10%) of this silage maintained performance levels and improved meat oxidative stability and lipid profile, indicating that the phenolic-fiber matrix can beneficially modulate product quality without penalizing growth [
20].
Building on the poultry results, the same innovative silage was subsequently tested in pigs. In a pilot study, pigs received 0%, 5%, or 10% inclusion of the tested silage. Growth performance was maintained, while gut microbiota profiling revealed increases in beneficial taxa (e.g.,
Bifidobacterium pseudolongum) and reductions in potentially problematic
Streptococcus spp., suggesting that the silage’s fermentable fiber and polyphenols reshaped the intestinal ecosystem in a potentially favorable way; carcass and meat-quality indices remained largely unaffected under the tested conditions [
21,
22]. Collectively, the evidence supports the hypothesis that silages formulated from agro-industrial by-products can partially substitute imported feed inputs while delivering antioxidant and microbiota-modulatory bioactives that promote host health, in alignment with EU antimicrobial-use reduction and sustainability directives.
European and Greek data indicate that (i) OMW streams in olive-producing regions (notably Greece) are large enough to justify feed-grade valorization pathways; (ii) grape pomace provides a seasonally abundant, phenolic-rich, fiber matrix compatible with ensiling; and (iii) cheese whey (or its de-proteinized solids) is both an environmental pressure point and a useful fermentable component in mixed silages [
1,
23,
24]. When properly stabilized—most practically via ensiling and/or fermentation—these by-products can be blended into functional feeds for monogastrics such as pigs and poultry, with encouraging evidence for maintained performance; higher composition of antioxidant polyphenols, which may lead to improved oxidative stability of products during storage or further processing; and microbiome modulation [
4,
5,
8,
11,
15,
20,
21,
22]. Future work should focus on the finishing-pig production stage, refine inclusion levels beyond 10% where feasible, and incorporate techno-economic and life-cycle assessments to quantify cost savings and environmental co-benefits alongside animal health and product-quality outcomes [
20,
21,
22].
The present study evaluated a new type of silage aimed at overcoming limitations in the utilization of locally generated agro-industrial by-products, specifically olive mill wastewater and grape pomace solids, as well as de-proteinized feta cheese waste solids. The silage formulation was established following optimization trials of the three components [
19] and has been previously investigated in broiler chickens [
20] and weaned pigs [
22], yielding promising results in terms of health, productivity, and meat quality characteristics. To our knowledge, this is the first study evaluating this silage in finishing pigs. In doing so, we extend previous research conducted in weaned pigs by examining the effects of this application on growth performance, health indicators, and meat quality at the finishing stage, when feed consumption is highest and the valorization of agro-industrial by-products may provide considerable environmental and economic advantages.
2. Materials and Methods
2.1. Experimental Design and Treatments
All experimental procedures strictly followed the National Guidelines for Animal Trials (PD, 2013) [
25] and received approval from the Department of Agriculture, University of Ioannina, Greece, through the University Research Committee (approval no. 61291/135/10.06.2020). The animal phase of the experiment was designed in compliance with the welfare considerations outlined in the Good Farming Practice Guidelines (Directive 2010/63/EC; Commission Recommendation 2007/526/EC). Throughout the experimental period, farming conditions and animal health were continuously monitored under veterinary and animal scientist supervision; all were members of the Department of Agriculture, University of Ioannina.
Animals were eighteen terminal crossbred pigs derived from Large White–Landrace maternal lines and Duroc paternal genetics, aged 120 days and obtained from an intensive pig production facility located near the university campus. Pigs were individually ear-tagged and randomly assigned to one of three dietary treatments: Control (0% silage), 5% silage, or 10% silage inclusion. The bioactive innovative silage tested as a feed additive in this trial was previously created following a novel multi-criteria mathematical optimization of the composition of 67 different recipes, as described by Petrotos et al. [
19]. After fermentation of olive mill wastewater solids, grape pomace solids, and de-proteinized feta cheese whey solids, the optimal mixing ratio was chosen, and a novel silage was produced by establishing specific characteristics: low pH value (pH = 4.37), higher lactic acid content (total acidity = 2.52 expressed as lactic acid), higher lactic acid bacteria count (total Lactic acid bacteria = 6.9 cfu/g), and simultaneous total yeast and mold count at 0.1 cfu/g.
Table 1 presents the chemical analysis of the tested silage.
At the beginning of the trial, pigs across all three groups had comparable body weights (average initial mean body weight: 59.47 ± 0.85 kg). Each group comprised six animals (three gilts and three barrows). From a husbandry perspective, pigs were housed in semi-slatted concrete–floor pens within a controlled-environment facility. During the finishing period, the temperature was maintained between 18–23 °C, relative humidity between 50–70%, and ventilation rates were adjusted to avoid draughts, while maintaining air speed below 0.3–0.5 m/s. Stocking density was 1.1 m
2/pig, in accordance with EU legislation (Council Directive 2008/120/EC). Standard farm management procedures were followed, including vaccination. Feed and water were provided ad libitum. Pigs in the control group (Silage-0%) were offered a commercial diet formulated according to National Research Council guidelines [
26] and the Premier Nutrition database [
27], whereas the experimental diets included the tested silage at a 5% (Silage-5%) or 10% (Silage-10%) inclusion rate. The diets were balanced to be isonitrogenous and isocaloric. In
Table 2, the composition of diets and the chemical analysis of the final feeds are presented. The trial lasted 60 days (from 120 to 180 days of age). Pigs were individually weighed at day 1 and 60 days later, when the experiment ended, using a Mini–L 3510 animal scale (Zygisis, Chalkidiki, Greece). Daily records were kept of feed intake, water consumption, and mortality rates. Zootechnical performance indices were calculated, including average weight gain (AG, kg/period), average feed intake (AFI, kg feed/period), and feed conversion ratio (FCR, kg feed intake/kg live weight gain). On day 60, blood samples were collected from six pigs per group before slaughter. Animals were humanely slaughtered in an abattoir near the experimental premises. Carcass samples of shoulder (triceps brachii) and pancetta (external abdominal muscle) were collected, along with intestinal samples (ileum and caecum), which were obtained aseptically during evisceration.
2.2. Phenolic Content and Thiobarbituric Acid Reactive Substances (TBARs) Determination in Animal Feed
The total phenolic content of the diets was determined using the Folin–Ciocalteu assay, following the procedure of Vasilopoulos et al. [
28]. Lipid oxidation was evaluated using a thiobarbituric acid–reactive substances (TBARS) assay, modified from the method of Botsoglou et al. [
29]. In brief, 1.0 g of feed was homogenized with 8 mL of 5% (
w/v) trichloroacetic acid (TCA) and 5 mL of 0.8% (
w/v) butylated hydroxytoluene (BHT) prepared in hexane. The homogenate was centrifuged at 3000×
g for 5 min, and 1.5 mL of the resulting aqueous phase was collected. This fraction was mixed with 2.5 mL of 0.8% (
w/v) thiobarbituric acid (TBA) and incubated in a water bath at 70 °C for 30 min. For the estimation of the values for TBARs, a standard curve was prepared using standard solutions of 1,1,3,3-tetraethoxypropane, a precursor of malondialdehyde. The absorbance was recorded at 532 nm, with lipid oxidation reported as TBARS in mg of malondialdehyde (MDA) per kg of feed.
2.3. Isolation, Enumeration and Identification of Bacterial Populations
Fresh ileal and caecal digesta were obtained immediately post-slaughter from six pigs per dietary treatment. For primary processing, 1 g of intestinal content was homogenized in 9 mL of sterile 0.1% (
w/v) peptone water. Quantitative bacteriology followed the Miles–Misra surface-drop technique: twelve-step, tenfold serial dilutions (10
−1–10
−12) were prepared in 96-well microplates, and 10 µL aliquots from each dilution were spotted onto the appropriate media. MacConkey agar and Kanamycin Aesculin Azide (KAA) agar (Merck, Darmstadt, Germany) were used to recover
Enterobacteriaceae and
Enterococci, respectively; plates were incubated aerobically at 37 °C for 24–48 h. Lactic acid bacteria were enumerated on De Man, Rogosa and Sharpe (MRS) agar (Oxoid, Basingstoke, UK) and on M17 agar (Lab M Limited, Lancashire, UK), with incubation at 37 °C for 48 h under anaerobiosis.
Bifidobacteriaceae were quantified on Transgalactooligosaccharide Propionate (TOS) agar (Merck, Darmstadt, Germany) supplemented with glacial acetic acid (1%,
v/v) and mupirocin (100 µL/mL), incubated anaerobically at 37 °C for 72 h. Total aerobic and anaerobic counts were estimated on plate count agar (Oxoid) after incubation at 30 °C for 48 h (aerobic) and at 37 °C for 48–72 h (anaerobic), respectively. Characteristic colonies from countable spots were recorded using a colony counter, expressed as log
10 CFU per g of wet digesta, then described and subcultured. Taxonomic assignment at the family level was performed with the VITEK
® 2 compact system (bioMérieux, Marcy l’Etoile, France), which provides reliable identification across a broad range of Gram-positive and Gram-negative bacteria [
30]. For
Enterobacteriaceae,
Enterococcaceae,
Lactobacillaceae, and
Bifidobacteriaceae, the VITEK
® 2 ID-GN, ID-GP, CBC/ANC, and ANC ID cards (bioMérieux) were used, respectively.
2.4. Hematological and Biochemical Analysis of the Blood
On day 60 (final sampling, pre-slaughter), blood was obtained from six pigs per dietary group following a 4 h feed withdrawal. Approximately 4 mL was collected by jugular venipuncture into EDTA-treated vacutainer tubes for hematology. Hematological indices—hemoglobin concentration, erythrocyte count, hematocrit (HCT), total leukocytes, and lymphocytes—were quantified using the MS4 (Melet Schloesing Lab, Osny, France) automated analyzer. Serum biochemical variables—albumin (ALB), alanine aminotransferase (ALT), aspartate aminotransferase (AST), cholesterol (CHOL), creatine kinase (CK), glucose (GLU), total bilirubin (TBIL), and triglycerides (TRIG)—were measured with a VetTest 8008 analyzer (IDEXX Laboratories, Westbrook, ME, USA).
2.5. Meat Chemical and Color Analysis
Triceps brachii and external abdominal oblique muscle samples were excised and immediately frozen at −20 °C for subsequent analyses. Portions of 200 g were comminuted in a heavy-duty meat grinder (Bosch, Gerlingen, Germany). Near-infrared spectroscopy (FoodScan™ Lab, FOSS, Hillerød, Denmark) was used to quantify moisture, crude protein, fat, collagen, and ash, following AOAC 2007.04 for meat and meat products [
31].
Muscle pH (triceps brachii and external abdominal oblique meat cuts) was measured with a portable pH meter designed for solid matrices (HI981036; Hanna Instruments, Woonsocket, RI, USA). For each dietary group, six pork samples were assessed by inserting the stainless-steel probe into the geometric center of the tissue; group means were then calculated.
Color measurements of the triceps brachii and external abdominal oblique muscles were conducted using a Hunter L *, a *, b * color system with a CAM-System 500 chromameter (Lovibond, Amesbury, UK) [
22]. Meat samples, cut to a thickness of 1.2 cm, were placed on polystyrene trays and allowed to bloom for 30 min at 4 °C under aerobic conditions prior to analysis. Color parameters were recorded in the CIE Lab * space, where L * corresponds to lightness, a * to red–green intensity, and b * to yellow–blue intensity.
2.6. Oxidative Stability Analysis of the Meat
A modified Folin–Ciocalteu assay was used to quantify total polyphenols in fresh pork tissues (3rd day after slaughter). A 0.2 g/L gallic acid stock (Merck, Germany) was prepared in 100 mL distilled water and serially diluted to generate standards of 0.005, 0.01, 0.05, 0.1, 0.25, 0.5, and 1.0 g/L. For each calibrant, 0.2 mL was dispensed into a 50 mL polypropylene tube and combined with 10.8 mL distilled water, 8.0 mL sodium carbonate solution (75 g Na2CO3 per L; Penta Chemicals, Prague, Czech Republic), and 1.0 mL Folin–Ciocalteu reagent (PanReac AppliChem, Darmstadt, Germany). A reagent blank contained 0.2 mL distilled water in place of standard. After vortex mixing, tubes were incubated for 1 h at room temperature in the dark. Absorbance was recorded at 750 nm on a DR 5000 UV–Vis spectrophotometer (Hach Lange, Düsseldorf, Germany), using the blank for instrument zeroing. The calibration curve (absorbance vs. gallic acid concentration) was linear with R2 = 0.9989 (constructed in Microsoft Excel). Meat extracts were prepared by homogenizing 5 g of shoulder, belly, or ham with 10 mL distilled water, followed by filtration through paper. Aliquots (0.2 mL) of filtrate were reacted identically to the standards, with a matrix blank (0.2 mL water) used for spectrophotometer calibration. Results were expressed as gallic acid equivalents.
Lipid oxidation was quantified using a thiobarbituric acid reactive substances (TBARS) assay, as modified based on Dias et al. [
32], on the 3rd day after slaughter. For this procedure, 5 g samples of triceps brachii or external abdominal oblique muscle were homogenized with 25 mL of trichloroacetic acid (TCA), transferred to glass containers, and allowed to stand for 20 min. The homogenate was then filtered, and 5 mL of the resulting filtrate was mixed with 5 mL of 2-thiobarbituric acid (TBA) solution in glass tubes. A reagent blank was prepared by replacing the filtrate with 5 mL of TCA. After vortexing, tubes were incubated in a water bath at 60 °C for 15 min and cooled to room temperature, and the absorbance was read at 532 nm on a UV–Vis spectrophotometer using the blank for baseline correction. For the estimation of TBARs values, a standard curve was prepared using standard solutions of 1,1,3,3-tetraethoxypropane.
2.7. Microbiological Analysis of Meat Cuts
Following 48 h of refrigerated storage at 4 °C (to accommodate transport and handling), microbiological analyses were conducted on meat from six pigs per treatment. For each sample, 10 g of shoulder or belly meat was homogenized in a BagMixer 400 (Interscience, Saint-Nom-la-Bretèche, France) with 90 mL of sterile Maximum Recovery Diluent (MRD; Oxoid, Basingstoke, UK) to obtain a 10
−1 suspension. Tenfold serial dilutions were then prepared in 9 mL MRD, and appropriate dilutions (1.0 or 0.1 mL) were plated for enumeration as follows:
Escherichia coli on Tryptone Bile X-Glucuronide (TBX) agar at 37 °C for 24 h (aerobic); sulfite-reducing clostridia on Perfringens Agar Base at 37 °C for 48 h under anaerobiosis generated with Anaerocult A (all Oxoid);
Staphylococcus aureus and other
Staphylococcus spp. on Baird–Parker agar supplemented with egg-yolk tellurite (50 mL L
−1) at 37 °C for 48 h (aerobic); total mesophilic counts on Plate Count Agar at 30 °C for 48 h (aerobic); and
Campylobacter jejuni on Campy Blood-Free Selective Medium (CCDA; Acumedia–Lab M, Lansing, MI, USA) with selective supplement under microaerophilic conditions (10% CO
2) at 37 °C for 72 h. Detection of
Salmonella spp. and
Listeria monocytogenes was performed on 25 g portions in accordance with ISO 6579:2002 [
33] and ISO 4833:2001 [
34], respectively. All plates were incubated in thermostatic cabinets (BD 115; Binder, Germany).
2.8. Fatty Acid Analysis of the Meat
Fatty acids in triceps brachii and external abdominal oblique muscles were analyzed after in situ transesterification according to the method described by O’Fallon et al. [
35]. Fatty acid methyl esters (FAME) were separated and quantified following the procedure of Giannenas et al. [
36] on a TraceGC gas chromatograph (Model K07332; ThermoFinnigan/Thermoquest, Milan, Italy) equipped with a flame ionization detector. Retention times and elution order were assigned using the Supelco “37 Component FAME Mix” reference standard (Sigma-Aldrich, Darmstadt, Germany). Individual fatty acids were expressed as a percentage of total identified FAME (peak area of the analyte divided by the sum of peak areas for all identified fatty acids). From these data, the PUFA/SFA ratio, the n-6/n-3 PUFA ratio, and the hypocholesterolemic-to-hypercholesterolemic fatty acid index (h/H) were calculated, where h/H = (C18:1n-9 + ΣPUFA)/(C12:0 + C14:0 + C16:0). The h/H index was used as an indicator of the predicted cholesterolemic impact of the lipid fraction [
37].
2.9. Statistical Analysis
A randomized complete block design (RCB) was employed, considering each ear-tagged pig to be an experimental unit. Microbiological data were log
10-transformed prior to statistical analysis. Homogeneity of variances was assessed using Levene’s test. Depending on data distribution, either one-way ANOVA (parametric) or the Kruskal–Wallis test (non-parametric) was applied in SPSS v20 [
38]. When ANOVA revealed a significant treatment effect (
p ≤ 0.05), mean separation among the three dietary treatments was conducted using Tukey’s HSD test. Statistical significance was set at α = 0.05 for all analyses.
4. Discussion
Greece generates substantial quantities of agro-industrial by-products due to its strong and regionally concentrated production of wine, olive oil, and dairy products—three pillars of the Mediterranean agri-food sector. The country ranks among the leading EU producers of table olives, olive oil, and feta cheese, and maintains a long tradition of small- to medium-scale wineries. As a result, large seasonal volumes of grape pomace, olive-mill wastewater, and cheese whey are produced annually. Although often treated as waste, these streams contain valuable bioactive components such as polyphenols, organic acids, fibers, residual sugars, and antioxidant compounds. Their biological significance lies in their potential to enhance gut health, modulate oxidative balance, and improve meat quality when appropriately processed and included in animal feed [
1,
10,
11,
24]. Consequently, valorizing these abundant by-products through controlled fermentation or silage production offers both an environmental management strategy and an opportunity for functional feed innovation in Mediterranean livestock systems. It is estimated that the annual production of fresh grape pomace (GP), olive-mill wastewater (OMWW), and cheese whey (CW) in Greece is about 200,000 tons, 0.8–1.2 × 10
6 tons and 1.0–1.3 × 10
6 tons, respectively [
39]. Thus, it becomes evident that there are considerable amounts of agri-food waste that are potential pollutants and could be recycled and reused in modern livestock production. This trial evaluated for the first time a novel silage manufactured from three Greek agro-industrial by-products—olive-mill wastewater solids, grape pomace solids, and de-proteinized feta whey—fed at 0%, 5%, and 10% inclusion levels in finishing-pig diets. The concept aligns with recent circular-bioeconomy approaches that have formulated silages or feeds from exactly these streams and tested them in poultry and swine, demonstrating technical feasibility and safety while aiming to reduce dependence on conventional grains and soybean meal [
15,
19,
20,
21,
22]. Within this framework, our data show that (i) productive performance, final weight, feed conversion efficiency and carcass weight were preserved across treatments, while dressing percentage increased at 5 and 10% inclusion rates; (ii) ileal eubiosis indicators improved (↓ Enterobacteriaceae, ↓ Enterococci; ↑ Lactobacilli), with more modest changes observed in the caecum; (iii) serum biochemistry remained largely within reference limits with a modest reduction in ALT at 10%; and (iv) meat proximate composition and pH were unaffected, triceps brachii became redder (↑ a *) and slightly darker (↓ L *), Campylobacter jejuni counts decreased in shoulder cuts, and (v) the fatty acid contents remained generally unchangeable and the n-6/n-3 ratio in muscle fat showed a slightly improvement in the Silage-10% group.
All of these parameters evaluate the usage of agricultural by-products in monogastric animals, specifically pigs, without adverse effects being recorded in any zootechnical, health, or meat quality parameters. This allows for significant improvements in the silage or by-products characteristics in order to achieve beneficial results in the fatty acid profile and the antioxidant capacity of meat, as well as in the microbial populations in the gut of fattening pigs, with the addition of higher percentage of agro-industrial by-products.
4.1. Feed Antioxidant Metrics and Lipid Peroxidation
Feed MDA was lower in both silage-enriched diets (5% and 10%) than in the control, with higher dietary total phenolic content also recorded in the former. This pattern is consistent with the in-matrix antioxidant activity of grape- and olive-derived polyphenols, which can quench lipid radicals and chelate pro-oxidant metals, thereby interrupting propagation steps of lipid peroxidation in the feed itself. Comparable outcomes—reduced oxidative indices and/or enhanced phenolic density of the diet—have been reported when sole winery or olive coproducts (grape pomace or olive leaves, or OMWW extracts) were incorporated into monogastric rations or used to fortify food/feed matrices. These interventions frequently lower MDA or peroxide values in the matrix and/or downstream animal products, or at minimum, maintain oxidative status despite higher unsaturation loads [
15,
40,
41]. In pigs, phytogenic/phenolic preparations from olive mill wastewater have repeatedly reduced TBARS (and protein carbonyls) in vivo, supporting the notion that OMWW phenolics exert meaningful antioxidant effects within swine systems [
42]. Physiologically, a less oxidized diet can reduce the oxidative challenge entering the gastrointestinal tract, which may help explain the favorable ileal shifts we observed (↓
Enterobacteriaceae/Enterococci; ↑ Lactobacilli), showing absence of inflammatory indices; this was also observed in the biochemical and hematological results, in addition to the absence of pro-oxidative signals in meat despite modest fatty-acid changes. While much of the oxidized-feed literature is poultry-centric, it consistently shows that controlling feed oxidation improves redox balance and product quality—principles that plausibly extend to pigs as monogastrics [
43]. In our case, the combination of lower feed TBARS, unchanged meat TBARS, and redder shoulder color (↑ a *) suggests that the silage’s phenolic fraction chiefly protected the diet and may have contributed to a stable post-absorptive oxidative environment, in line with prior reports on grape/olive polyphenols in monogastric nutrition [
40,
41,
42,
44]. In finishing pigs, substituting part of the fat with olive-pomace acid oil elevated product oxidation at certain inclusion levels compared with refined blends, underscoring that the source and handling of ingredients modulate oxidative outcomes [
45]. At the same time, polyphenol supplementation in pigs yields heterogeneous antioxidant results—some studies show reduced TBARS in plasma or meat, others show no change—depending on extract type, dose, basal diet, and sampling matrix [
46,
47]. For instance, Gessner et al. reported no differences in plasma or liver TBARS in pigs fed grape seed/grape marc meal extract, despite anti-inflammatory intestinal effects [
48]. Conversely, classical α-tocopherol trials consistently lowered pork TBARS during storage, illustrating that not all antioxidants behave identically in vivo or in feed [
49]. In our study, the lack of treatment differences in meat TBARS—despite lower feed MDA—suggests that (a) dietary phenolics and/or improved gut ecology may have protected muscle lipids post-absorption, (b) the freezing/holding regime truncated oxidative divergence, or (c) the sampling window was too narrow to detect downstream effects. Similar null effects in pork TBARS with botanical phenolics have been reported when storage conditions were not strongly pro-oxidant [
50,
51,
52].
4.2. Performance and Carcass Traits
Final live weight, ADG, and FCR did not differ among A, B, and C and were within the farm’s expected range, matching numerous finishing-pig studies where grape or olive by-products at modest inclusion preserved growth [
3,
4,
5,
6]. For example, replacing wheat bran with grape pomace improved water-holding traits but not growth in finishing pigs [
53]. Additionally, dehydrated grape pomace at 5–10% levels maintained performance while altering some carcass and fat traits in a local genotype [
51]. For olive coproducts, both neutral and beneficial effects on growth and carcass have been observed depending on inclusion level and processing (e.g., partially de-stoned or ensiled olive cake) [
54,
55,
56,
57,
58]. We observed a higher dressing percentage at 5–10% silage. While not universal, increased dressing has been reported with phenolic-rich additives (e.g., grape seed proanthocyanidins or ferulic acid mixtures) in finishing pigs, potentially via lean-to-fat repartitioning and water losses at slaughter [
59,
60]. Conversely, some olive-cake programs reported unchanged dressing or minimal at the highest inclusions, indicating that matrix, dose, and genotype interact [
54,
56]. Within that landscape, our response—an improved dressing percentage without weight penalty—fits within the “no-harm to growth, occasional carcass benefit” envelope reported for moderate inclusions of winery/olive by-products [
55,
56].
4.3. Intestinal Microbiology
The ileal shift toward eubiosis (↓
Enterobacteriaceae and Enterococci; ↑ Lactobacilli) in B and C is consistent with the prebiotic and antimicrobial profile of plant polyphenols and fermentable fiber [
61]. Grape pomace in pigs increased
Lactobacillus/
Bifidobacterium and modulated performance and antioxidant status, and broader reviews conclude that grape phenolics in pigs enhance antioxidant capacity, immune tone, and gut biodiversity [
62]. Mechanistically, polyphenols can reduce pathobiont abundance through direct bacteriostatic or bactericidal action and by shifting substrates toward commensal fermenters; several pig studies and reviews support these pathways [
61,
62]. Our silage also contributed whey solids to the diet; independent studies show improved growth and beneficial fecal microbiota when liquid whey is included in pig diets [
63,
64]. Beyond single ingredients, finishing pigs fed non-conventional mulberry silages exhibited improved meat quality via gut-microbiota modulation and barrier integrity, supporting a “silage-to-gut-to-meat” axis [
65]. Finally, closely related work with exactly this innovative silage in pigs demonstrated microbiota compositional shifts without performance penalties, reinforcing our enteric findings [
21].
4.4. Serum Biochemistry
The modest reduction in ALT in the Silage-10% group is directionally compatible with hepatoprotective effects of certain plant polyphenols under oxidative or inflammatory challenge in piglets (e.g., holly leaf Ilex latifolia polyphenols attenuating LPS/diquat-induced liver injury with lower ALT/AST/GGT). However, in non-challenged settings, olive or grape polyphenols often leave transaminases unchanged [
66]. Thus, our small ALT decrease should be interpreted as biologically modest but not inconsistent with a mild improvement in hepatic redox/immune milieu.
4.5. Meat Composition, pH, and Color
The proximate composition and pH of triceps brachii and external abdominal muscles were unaffected, as commonly observed with moderate botanical inclusions. Triceps brachii became redder (↑ a *) and slightly darker (↓ L *) in B and C. Although color can be largely affected by parameters like pH, water content and water holding capacity, and myglobin concentration and redo/oxidative state, these characteristics was not altered after the applied treatments. It seems that the increased redness resulted from the addition of antioxidant compounds in the bioactive feed supplement (silage). Antioxidants can stabilize oxymyoglobin and mitigate metmyoglobin formation, thereby sustaining redness. Phenolics may also interact with muscle iron chemistry and endogenous enzymes, contributing to color stability, while darker appearance (lower L *) can arise from subtle differences in water distribution or myoglobin state. Reports with grape products or antioxidant mixtures in pigs similarly describe improved early post-mortem redness and/or water holding without large pH shifts [
53,
59]. The observed decrease in moisture percentage in the pork belly meat cuts can be attributed to the elongation of fatty acids towards monosaturated and unsaturated, with the simultaneous increase in fat content functioning to advertise possible flavor and texture shifts; it is possible to differentiate these cuts according to consumers’ selection criteria.
4.6. Meat Microbiology
The lower
Campylobacter jejuni counts in the shoulder in the 10% group dovetail with extensive in vitro evidence that phenolic extracts—including grape seed and sorghum phenolics—and even olive-mill wastewater polyphenols inhibit
Campylobacter growth, adhesion, and biofilm formation [
67]. While most intervention data are post-harvest or in poultry systems, the directionality supports a plausible diet-to-muscle reduction mediated either by (i) lower intestinal/lymphatic carriage at slaughter or (ii) carry-over of phenolics to the muscle microenvironment where they can exert antimicrobial effects. The absence of
Salmonella and
L. monocytogenes across treatments is foremost an indicator of sound hygiene; polyphenols can suppress these pathogens in meat systems, but our experimental design cannot attribute this absence to the diet. The sporadic
E. coli in the belly (but not the shoulder) is consistent with anatomical contamination risk rather than a treatment effect.
4.7. Phenolic Content in Meat and Oxidative Stability
The detected higher total phenolics in triceps brachii at 10% silage are consistent with reports that dietary plant phenolics (especially from grape) can increase meat total phenolics and antioxidant capacity in monogastrics, though the magnitude varies with extractability and conjugation [
66]. Meat TBARS did not differ among groups, despite higher feed MDA; this outcome is congruent with several pig studies in which grape-derived phenolics either reduced systemic lipid peroxidation or left TBARS unchanged at slaughter, depending on dose and storage protocol [
50,
51]. Together with improved redness, unchanged TBARS points to adequate oxidative protection of muscle lipids at the tested inclusion levels and under our storage conditions.
4.8. Fatty-Acid Profile
It is well-established that the fatty acid profiles of meat lipids in pigs and poultry closely reflect the composition of fats in their diets [
68,
69]. Dietary enrichment with polyunsaturated fatty acids is often linked to elevated levels of these acids in the muscle and adipose tissues, both through direct incorporation and modification of unsaturated fatty acids synthesis, by modulating lipid metabolism through the suppression of key lipogenic enzymes involved in de novo fatty-acid synthesis [
70]. Thus, the formulation of the silage containing a high proportion of OMWW [
19] may explain the improved (
p = 0.005) n-6/n-3 ratio observed in the Silage-10% group (17.54 → 15.09), reflecting a modest yet favorable shift in muscle lipid quality in the external abdominal oblique cuts, despite the concurrent reduction in total MUFA (
p = 0.049). Reviews and trials document that grape by-products can beneficially influence pork FA profile (including modest n-3 increases) and that certain olive-cake programs shift MUFA upward and, in some cases, lower dietary n-6/n-3 [
48,
51,
53]. Moreover, controlled manipulations of the dietary n-6/n-3 ratio in pigs produce corresponding shifts in tissue FA and can improve meat-quality indices without compromising oxidative stability when properly balanced. Another study reported that inclusion of grape pomace solids at a 5% rate in finishing-pig diets did not affect the SFA, MUFA, PUFA, n-6 or n-3 PUFA percentages in the meat [
51,
71,
72]. Although the innovative silage used was not a n-3 supplement per se, the aggregate of olive- and grape-derived lipids plus secondary metabolic effects may explain the modest reduction observed. If a larger decrease is targeted, co-inclusion of known n-3 sources (e.g., linseed oil) with grape/olive by-products could be effective and widely reported [
73]. Finally, ensiled olive cake at high inclusion has been shown to improve pork nutritional indices while valorizing a key Mediterranean by-product [
53].
Overall, the data support that a 5–10% inclusion of this Greek mixed silage can (i) maintain finishing performance; (ii) modestly improve carcass dressing; (iii) promote ileal eubiosis with lower
Enterobacteriaceae/Enterococci and higher Lactobacilli; (iv) produce redder triceps brachii meat without compromising pH, proximate composition, or TBARS; (v) reduce
C. jejuni recovery in triceps brachii meat; and (vi) slightly improve the n-6/n-3 ratio in muscle lipids. These outcomes are consistent with prior work on weaned pigs and microbiomes using the same silage concept and with broader evidence on grape/olive phenolics in pigs [
18,
19]. The study scope and boundary conditions included a modest sample size, assessment within a single finishing cycle and genotype, and potential matrix effects specific to the silage (e.g., phenolic spectrum, degree of fatty-acid unsaturation, and mineral load) that may influence feed oxidation indices without necessarily manifesting in meat outcomes. The results are also expected to depend on ingredient composition, inclusion level, and processing conditions; any scale-up should additionally consider regulatory context, cost, and palatability. Future work could incorporate extended storage simulations (e.g., refrigerated retail display) and targeted lipidomics to characterize oxidative resilience, while metagenomic and metabolomic profiling would clarify microbe–phenolic interactions along the gut–muscle axis. Finally, evaluating defined n-3 co-supplementation strategies to enhance the favorable shift in the n-6/n-3 ratio—concurrent with sensory assessment—would help optimize nutritional and product-quality endpoints.
5. Conclusions
In contemporary animal production, developing alternative feed sources is increasingly important for reducing reliance on conventional ingredients, lowering costs, increasing sustainability, and recycling agro-industrial residues. The present study evaluated, for the first time in finishing pigs, a silage produced from olive, winery, and cheese by-products incorporated at 0%, 5%, and 10% of the diet. The inclusion of this silage did not negatively affect growth performance, carcass traits, hematological indices, or general meat quality. Instead, beneficial effects were observed on intestinal microbiota composition, with increased Lactobacilli and decreased Enterobacteriaceae and Enterococci, together with elevated muscle phenolic content and an improved n-6/n-3 fatty acid ratio at higher inclusion levels. Although lipid oxidation (TBARS) was not significantly altered, meat color and some microbial parameters, such as Campylobacter jejuni prevalence, were favorably influenced. Overall, these findings indicate that the investigated silage supports pig health and meat functionality while simultaneously valorizing significant Greek agro-industrial by-products, thereby contributing to more circular and environmentally sustainable livestock production.