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Article

Synthesis and Characterization of the Germathioacid Chloride Coordinated by an N-Heterocyclic Carbene §

1
Department of Chemistry and Chemical Biology, Graduate School of Science and Technology, Gunma University, Kiryu, Gunma 376-8515, Japan
2
Functional Polymer Group, Sagami Chemical Research Institute, 2743-1 Hayakawa, Ayase, Kanagawa 252-1193, Japan
*
Authors to whom correspondence should be addressed.
Present Address: Frontier Research Group, Research and Development (R&D) Center for Marine Bioscience, Japan Agency for Marine-Earth Science and Technology (JAMSTEC), 2-15 Natsushima-cho, Yokosuka, Kanagawa 237-0061, Japan.
§
Dedicated to Prof. Dr. Robert West in honors of his 90th birthday.
Inorganics 2018, 6(3), 76; https://doi.org/10.3390/inorganics6030076
Received: 28 June 2018 / Revised: 29 July 2018 / Accepted: 1 August 2018 / Published: 3 August 2018
(This article belongs to the Special Issue Coordination Chemistry of Silicon)

Abstract

:
Carboxylic acid chlorides are useful substrates in organic chemistry. Many germanium analogues of carboxylic acid chloride have been synthesized so far. Nevertheless, all of the reported germathioacid chlorides use bidentate nitrogen ligands and contain germanium-nitrogen bonds. Our group synthesized germathioacid chloride, Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2), using N-heterocyclic carbene (Im-i-Pr2Me2). As a result of density functional theory (DFT) calculation, it was found that electrons are localized on sulfur, and the germanium-sulfur bond is a single bond with a slight double bond property.

Graphical Abstract

1. Introduction

Heavier analogues of multiple bonded organic species have attracted the interest of many chemists in terms of comparisons for structures, physical properties, and reactivities [1,2,3]. For a long time, multiple bonds of higher row main group elements have been thought to be unstable due to the small overlap of π-orbitals. However, a breakthrough occurred in 1981 with the achievement of the synthesis of Si=C [4], S=Si [5], and P=P [6] bonds by taking advantage of the protection by bulky substituents. They have also opened a breach in the elemental bond theory. In recent years, increasing interest in the chemistry of double-bonded species between group 14 and 16 elements has emerged, since carbonyl compounds represent one of the most important functionalities in chemistry [3,7,8]. Among them, focusing on the double bond of germanium and sulfur, that is, germanetione, there is a history of research as shown below (Figure 1).
In 1989, Veith and co-workers synthesized germanethione (I) (germanium urea), which was stabilized by nitrogen ligand, and determined its structure by X-ray analysis [9]. After that, Okazaki, Tokitoh and co-workers isolated the first diarylgermanethione (II) using a very bulky protecting group and determined its structure [10,11]. Meanwhile, in organic chemistry, carboxylic acid chloride is an important compound group that serves as a substrate for the Friedel–Crafts reaction or Rosenmund reduction. The development of heavy analogues of carboxylic acid chloride was achieved by Roesky’s group in 2002. They succeeded in the synthesis and isolation of the target substance (III) by thermodynamic stabilization using a π-diketiminate ligand [12]. Following their work, several results of germathioacid chloride syntheses using a bidentate nitrogen ligand have been reported (IVVII) [13,14,15,16]. Nevertheless, due to the limitation of the use of a bidentate nitrogen ligand, all germathioacid chloride syntheses reported so far are only those in which nitrogen atoms and germanium are bonded; thus, all are heavy analogues of carbamoyl chloride.
In this paper, we report the synthesis and structure of germathioacid chloride stabilized with an NHC ligand. Among germathioacid chlorides, this is the first example containing a germanium carbon bond. We have clarified the bonding state of the germathioacid chloride by density functional theory (DFT) calculation.

2. Results and Discussion

2.1. Synthesis and Structure of Germathioacid Chloride 3

As shown in Scheme 1, 1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene (Im-i-Pr2Me2)-substituted chlorogermylene (2) was prepared by the reaction of the Ge(Cl){C6H3-2,6-Tip2} (1) with an equivalent amount of Im-i-Pr2Me2 in dry toluene. This synthesis method was based on Filippou’s method [17]. Compound 2 was treated with sulfur element in dry benzene-d6 at ambient temperature for 3 days, and after work up, the germathioacid chloride coordinated by Im-i-Pr2Me2 (3), Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) was obtained in 31% yield. The germathioacid chloride (3) was characterized by NMR spectroscopy together with elemental analysis, and the structure of 3 was finally determined by single-crystal X-ray analysis (Figure 2).
Crystals suitable for X-ray crystallographic analysis of 3 were obtained from benzene-d6. Compound (3) crystallized in the monoclinic crystal system with P21/n space group. Compound (3) is the first example of germathioacid chloride in which the Ge atom is not coordinated to an N atom. The germanium center is bonded to the terphenyl ligand, chlorine, and sulfur atoms, and the other site is occupied by the NHC (Im-i-Pr2Me2), resulting in a tetrahedral geometry at the germanium center. The Ge–S bond of 3 (2.0846(8) Å) is slightly longer than the Ge=S bonds stabilized by N ligands (ranging from 2.048(2) Å to 2.066(1) Å [12,13,14,15,16]), but shorter than the Ge–S single bond (2.239(1) Å [18]) (Figure 1). This result suggests that the Ge–S bond has a partial double bond character.

2.2. Density Functional Theory Studies on the Germathioacid Chloride 3

In order to better understand the characteristics of germathioacid chloride 3, a density functional theory (DFT) calculation (B3LYP/6-31G(d,p)) was carried out [19]. The optimized structure of the germathioacid chloride 3 well-reproduced the structure experimentally observed in single-crystal X-ray analysis (Figure 2 and Figure S3). The natural population analysis (NPA) showed that a large positive charge was located on Ge (+1.240), and the S atom and Cl atom had negative charges of −0.762 and −0.456, respectively. The calculated IR stretching frequency of G=S bond was 469.64 cm−1.
As shown in Figure 3, the highest occupied molecular orbital (HOMO) and HOMO − 1 were predominantly localized on the S atom, which should correspond to non-bonding pair electrons (Figure 3a,b), and an π–bond between the Ge atom and the S atom was not observed. The molecular orbitals (MOs), which should correspond to the σ-bonds of the Ge–S/Ge–C(NHC), and the σ*-bonds of the Ge–S/Ge–Cl were also observed in HOMO − 1/HOMO − 29 (Figure 3c,d) and LUMO + 8, respectively (Figure 3e). These results suggest that the Ge–S bond would have a single bond character. On the other hand, the value of the Wiberg Bond Index (WBI) of Ge–S is 1.367, implying that the Ge–S bond has a partial double bond character. Although the value of WBI seemingly contradicted the analysis of the MOs, the second-order perturbation theory analysis rationalized the Ge–S bond feature; both non-bonding pair electrons localized on the S atom donated stabilization energy to the σ*-orbitals of the Ge–Cl (23.39 kcal/mol), Ge–C(ArTip) (11.23 kcal/mol), and Ge–C(NHC) (16.51 kcal/mol), respectively, and the secondary orbital interaction should be attributed to the partial π-bonding nature between the Ge–S bond in the WBI analysis. These results indicate that the Ge–S bond is a single bond with a partial double bond character, which is in good agreement with observation that the bond length (2.0846(8) Å) in the germathioacid chloride 3 (Figure 2) is shorter than that of the single bond of Ge–S (2.239(1)Å) [18], and longer than that of the Ge–S double bond (2.048(2) Å to 2.066(1) Å) [12,13,14,15,16].
Based on experiments and calculation results, compound 3 could be an intermediate property between 3′ and 3″ (Figure 4). Further investigation will be carried out in the future.

3. Materials and Methods

3.1. General Information

Materials: All manipulations were carried out under an argon atmosphere using standard Schlenk-line or glove-box techniques. Hexane, ether, and THF were dried by being passed through columns of activated alumina and a supported copper catalyst supplied by Nikko Hansen & Co., Ltd. (Osaka, Japan). Toluene was refluxed over sodium and benzophenone, distilled, and degassed prior to use. Deuterated benzene (C6D6, benzene-d6) was dried and degassed over a potassium mirror in vacuo prior to use. (Et2O)LiC6H3-2,6-Tip2 [20], Ge(Cl){C6H3-2,6-Tip2} [21] and 1,3-diisopropyl-4,5-dimethylimidazol-2-ylidene (Im-i-Pr2Me2) [22] were prepared according to procedures published in the literature.
The Fourier transformation nuclear magnetic resonance (NMR) spectra were obtained using JEOL JNM-ECS 300 (1H at 300 MHz, 13C at 75 MHz) and JEOL JNM-ECA 600 (1H at 600 MHz, 13C at 151 MHz) NMR instruments (JEOL, Tokyo, Japan). For 1H-NMR, chemical shifts are reported as δ units (ppm) relative to SiMe4 and the residual solvents peaks were used as standards. Analysis by electron impact mass spectrometry (EI-MS) was performed on a SHIMADZU GCMS-QP2010SE/DI2010 (SHIMADZU, Kyoto, Japan). Elemental analyses were performed by the Center for Material Research by Instrumental Analysis (CIA), Gunma University, Japan.

3.2. Synthesis

3.2.1. Synthesis of Ge(Cl){C6H3-2,6-Tip2}(Im-i-Pr2Me2) 2

To a solution of Ge(Cl){C6H3-2,6-Tip2} (249 mg, 0.423 mmol) in dry toluene (3 mL) was added 1,3-diisopropyl-4,5-dimethlylimidazol-2-ylidene (76.3 mg, 0.423 mmol) in dry toluene (6 mL) at room temperature under an argon atmosphere. The solution was stirred for 20 h. The resulting solution was concentrated under reduced pressure. Then, toluene was added for crystallization to afford 2 as colorless crystals (yield: 24.4 mg, 12%).
2: colorless crystals; 1H-NMR (300 MHz, C6D6, 70 °C, δ in ppm) δ 0.98 (broad, 6H) 1.04 (broad, 6H), 1.11 (d, J = 6.8 Hz, 6H), 1.16 (d, J = 6.8 Hz, 6H), 1.26 (d, J = 6.8 Hz, 6H), 1.31 (d, J = 6.8 Hz, 6H), 1.33 (d, J = 6.8 Hz, 6H), 1.58 (s, 6H), 1.64 (d, J = 6.8 Hz, 6H), 2.91 (sept, J = 6.8 Hz, 2H), 3.19 (sept, J = 6.8 Hz, 2H), 3.38 (sept, J = 6.8 Hz, 2H), 5.39 (broad, 2H), 6.96–7.12 (m, 3H), 7.23 (s, 4H); 13C{1H}-NMR (151 MHz, C6D6, RT, δ in ppm) δ 10.2 (CH3), 20.6 (CH3), 21.7 (CH3), 22.6 (CH3), 23.4 (CH3), 24.4 (CH3), 24.5 (CH3), 24.6 (CH3), 26.2 (CH3), 26.5 (CH3), 30.9 (CH), 31.2 (CH), 31.4 (CH), 31.5 (CH), 34.6 (CH), 34.9 (CH), 52.2 (CH), 52.8 (CH), 120.8 (CH), 121.0 (CH), 121.2 (CH), 125.0 (CH), 125.7 (CH), 126.3 (CH), 128.3 (CH), 129.3 (C), 131.8 (C), 140.0(C), 147.1 (C), 147.6 (C), 156.9 (C), 172.3 (C); Anal. Calcd. for C47H69ClGeN2: C 73.30, H 9.03, N 3.64; found: C 73.01, H 8.94, N 3.61.

3.2.2. Synthesis of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3

To a solution of Ge(Cl){C6H3-2,6-Tip2}(Im-i-Pr2Me2) (90.6 mg, 0.118 mmol) (2) in benzene-d6 (0.5 mL) in an NMR tube equipped with a Young stopcock at room temperature, S8 (3.77 mg, 0.118 mmol) was added. The solution was reacted for 3 day in the NMR tube. The resulting solution was concentrated under reduced pressure to yield colorless crystals of 3 (yield: 28.9 mg, 31%).
3: colorless crystals; 1H-NMR (600 MHz, C6D6, RT, δ in ppm) δ 0.34 (broad, 3H), 0.50 (broad, 3H), 0.94 (broad, 3H), 0.98 (broad, 3H), 1.04 (broad, 3H), 1.06 (broad, 3H), 1.16 (broad, 3H), 1.20 (broad, 3H), 1.30 (broad, 6H), 1.36 (broad, 12H), 1.49 (broad, 3H), 1.55 (broad, 3H), 1.97 (broad, 3H), 2.02 (broad, 3H), 2.64 (broad, 1H), 2.86 (broad, 1H), 2.97 (broad, 1H), 3.06 (broad, 1H), 3.73 (broad, 1H), 3.97 (broad, 1H), 5.38 (broad, 1H), 6.92–7.02 (m, 4H), 7.35–7.44 (m, 3H), 7.75 (broad, 1H); 13C{1H}-NMR (151 MHz, C6D6, RT, δ in ppm) δ 10.2 (CH3), 10.4 (CH3), 19.9 (CH3), 19.9 (CH3), 20.5 (CH3), 20.6 (CH3), 22.8 (CH3), 22.9 (CH3), 23.0 (CH3), 23.1 (CH3), 23.8 (CH3), 24.2 (CH3), 24.5 (CH3), 25.6 (CH3), 25.9 (CH3), 26.1 (CH3), 26.9 (CH3), 27.4 (CH3), 31.3 (CH), 31.4 (CH), 31.7 (CH), 32.1 (CH), 34.7 (CH), 34.8 (CH), 49.4 (CH), 52.7 (CH), 120.6 (CH), 120.8 (CH), 121.5 (CH), 122.1 (CH), 126.8 (CH), 128.4 (CH), 134.1 (CH), 138.9 (C), 139.7 (C), 142.0(C × 2), 145.2 (C), 145.3 (C), 145.4 (C), 146.3 (C), 148.3 (C), 148.4 (C), 148.5 (C), 148.4 (C), 148.5 (C), 148.8 (C), 152.0 (C), 153.3 (C); Anal. Calcd. for C47H69ClGeN2S2: C 70.28, H 8.78, N 3.49; found: C 69.99, H 8.72, N 3.88.

3.3. Single-Crystal X-ray Analysis of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3

Crystals suitable for the X-ray crystallographic analysis of the germathioacid chloride (3) were obtained from benzene-d6. The intensity data were collected on a Rigaku XtaLab P200 diffractometer (Rigaku, Tokyo, Japan) with multi-layer mirror mono chromated Mo Kα radiation (λ = 0.71075 Å). The structures were determined by direct methods (SHELXS-97) [23], and refined by full-matrix least-squares procedures on F2 for all reflections (SHELXL-97) [23]. All of the non-hydrogen atoms were refined anisotropically. All hydrogens were placed using AFIX instructions. All calculations were carried out using Yadokari-XG2009 [24]. Crystallographic data have been deposited into the Cambridge Crystallographic Data Centre, with deposition numbers CCDC 1851711 for compound 3. Copies of the data can be obtained free of charge via http://www.ccdc.cam.ac.uk/conts/retrieving.html (or from the Cambridge Crystallographic Data Centre, 12, Union Road, Cambridge, CB2 1EZ, U.K.; Fax: +44 1223 336033; e-mail: [email protected]).
Crystal data for Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) (3) (123 K): C47H69ClGeN2S, Fw 802.14, Monoclinic, Space group P21/n, colorless crystals, a = 9.3421(10), b = 19.570(2), c = 23.901(3) Å, β = 90.387(3)°, V = 4369.6(8) Å3, Z = 2, Dcalcd = 1.219 Mg/m3, R1 = 0.0486 (I > 2σ), wR2 = 0.1243 (all data), Goodness of Fit (GOF)= 0.906.

3.4. DFT Calculations

Density functional theory (DFT) calculations were performed using the Gaussian 16 program package [25]. Geometry optimizations and vibrational analyses of all local equilibriums were performed using the B3LYP functional with a basis set of 6-31G(d,p) for all atoms. The natural population analysis (NPA) [26], charge distribution, Wiberg bond index (WBI) [27], and second-order perturbation analysis were calculated with the natural bond orbital (NBO) program package at the B3LYP/6-31G(d,p) level of theory. Cartesian coordinates and energies of the computed structures are listed in the Supplementary Materials.

4. Conclusions

In conclusion, we have achieved the synthesis of germathioacid chloride without using nitrogen ligands. The nature of the bonds between the germanium atom and sulfur atom was investigated by X-ray analysis and DFT calculation. These experimental and theoretical results suggest that the Ge–S bond is a single bond with a partial double bond character. We hope that our research will help us clarify the nature of the Ge–S bond.

Supplementary Materials

The following are available online at https://www.mdpi.com/2304-6740/6/3/76/s1. Figures S1 and S2: 1H- and 13C{1H}-NMR spectra of 2 and 3 in C6D6, Figure S3: Optimized geometries of germathioacid chloride 3, Cartesian coordinates and energies of the computed structures, cif and check cif files of compound 3.

Author Contributions

Y.E., N.T. and M.U. conceived and designed the experiments; C.F. and Y.E. performed the experiments; Y.E. and N.T. performed the XRD analysis; K.M. performed the theoretical calculation; Y.E., K.M. and M.U. wrote the paper.

Funding

This research received no external funding.

Acknowledgments

The computations were performed by the Research Center for Computational Science, Okazaki, Japan.

Conflicts of Interest

The authors declare no conflict of interest.

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Figure 1. Ge=S-containing compounds and Ge=S bond length.
Figure 1. Ge=S-containing compounds and Ge=S bond length.
Inorganics 06 00076 g001
Scheme 1. Synthesis of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3.
Scheme 1. Synthesis of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3.
Inorganics 06 00076 sch001
Figure 2. Molecular structure of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3, with thermal ellipsoids shown at the 50% probability level. Hydrogen atoms are omitted for clarity. Ge: Green, S: Yellow, Cl: Light green, N: Blue, C: gray. Selected bond distances (Å) and angles (˚): Ge1–S1 2.0846(8), Ge1–Cl1 1.991(3), Ge1–C37 2.060(3), Ge1–Cl 2.2261(7); C1–Ge1–C37 108.65(10), C37–Ge1–Cl1 95.26(7), C1–Ge1–Cl1 106.70(7), C1–Ge1–S1 102.04(8), C37–Ge1–S1 104.82(8), S1–Ge1–Cl1 108.17(3).
Figure 2. Molecular structure of Ge(S)Cl{C6H3-2,6-Tip2}(Im-i-Pr2Me2) 3, with thermal ellipsoids shown at the 50% probability level. Hydrogen atoms are omitted for clarity. Ge: Green, S: Yellow, Cl: Light green, N: Blue, C: gray. Selected bond distances (Å) and angles (˚): Ge1–S1 2.0846(8), Ge1–Cl1 1.991(3), Ge1–C37 2.060(3), Ge1–Cl 2.2261(7); C1–Ge1–C37 108.65(10), C37–Ge1–Cl1 95.26(7), C1–Ge1–Cl1 106.70(7), C1–Ge1–S1 102.04(8), C37–Ge1–S1 104.82(8), S1–Ge1–Cl1 108.17(3).
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Figure 3. Selected molecular orbitals and their energy levels (eV): (a) HOMO (−4.815 eV), (b) HOMO − 1 (−4.925 eV), (c) HOMO − 7 (−6.6529 eV), (d) HOMO − 29 (−9.1961 eV), (e) LUMO + 8 (−0.6615 eV).
Figure 3. Selected molecular orbitals and their energy levels (eV): (a) HOMO (−4.815 eV), (b) HOMO − 1 (−4.925 eV), (c) HOMO − 7 (−6.6529 eV), (d) HOMO − 29 (−9.1961 eV), (e) LUMO + 8 (−0.6615 eV).
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Figure 4. Resonant structural formula of 3.
Figure 4. Resonant structural formula of 3.
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Egawa, Y.; Fukumoto, C.; Mikami, K.; Takeda, N.; Unno, M. Synthesis and Characterization of the Germathioacid Chloride Coordinated by an N-Heterocyclic Carbene §. Inorganics 2018, 6, 76. https://doi.org/10.3390/inorganics6030076

AMA Style

Egawa Y, Fukumoto C, Mikami K, Takeda N, Unno M. Synthesis and Characterization of the Germathioacid Chloride Coordinated by an N-Heterocyclic Carbene §. Inorganics. 2018; 6(3):76. https://doi.org/10.3390/inorganics6030076

Chicago/Turabian Style

Egawa, Yasunobu, Chihiro Fukumoto, Koichiro Mikami, Nobuhiro Takeda, and Masafumi Unno. 2018. "Synthesis and Characterization of the Germathioacid Chloride Coordinated by an N-Heterocyclic Carbene §" Inorganics 6, no. 3: 76. https://doi.org/10.3390/inorganics6030076

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