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Article

Computing Two Heuristic Shrinkage Penalized Deep Neural Network Approach

by
Mostafa Behzadi
1,
Saharuddin Bin Mohamad
2,
Mahdi Roozbeh
3,*,
Rossita Mohamad Yunus
1,* and
Nor Aishah Hamzah
1
1
Institute of Mathematical Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia
2
Institute of Biological Sciences, Faculty of Science, Universiti Malaya, Kuala Lumpur 50603, Malaysia
3
Faculty of Mathematics, Statistics and Computer Sciences, Semnan University, Semnan P.O. Box 35195-363, Iran
*
Authors to whom correspondence should be addressed.
Math. Comput. Appl. 2025, 30(4), 86; https://doi.org/10.3390/mca30040086
Submission received: 8 March 2025 / Revised: 31 July 2025 / Accepted: 4 August 2025 / Published: 7 August 2025

Abstract

Linear models are not always able to sufficiently capture the structure of a dataset. Sometimes, combining predictors in a non-parametric method, such as deep neural networks (DNNs), would yield a more flexible modeling of the response variables in the predictions. Furthermore, the standard statistical classification or regression approaches are inefficient when dealing with more complexity, such as a high-dimensional problem, which usually suffers from multicollinearity. For confronting these cases, penalized non-parametric methods are very useful. This paper proposes two heuristic approaches and implements new shrinkage penalized cost functions in the DNN, based on the elastic-net penalty function concept. In other words, some new methods via the development of shirnkaged penalized DNN, such as DNNelastic-net and DNNridge&bridge, are established, which are strong rivals for DNNLasso and DNNridge. If there is any dataset grouping information in each layer of the DNN, it may be transferred using the derived penalized function of elastic-net; other penalized DNNs cannot provide this functionality. Regarding the outcomes in the tables, in the developed DNN, not only are there slight increases in the classification results, but there are also nullifying processes of some nodes in addition to a shrinkage property simultaneously in the structure of each layer. A simulated dataset was generated with the binary response variables, and the classic and heuristic shrinkage penalized DNN models were generated and tested. For comparison purposes, the DNN models were also compared to the classification tree using GUIDE and applied to a real microbiome dataset.
Keywords: compositional high-dimensional data; classification tree; deep neural network; GUIDE; multicollinearity; non-parametric method; shrinkage penalized methods compositional high-dimensional data; classification tree; deep neural network; GUIDE; multicollinearity; non-parametric method; shrinkage penalized methods

Share and Cite

MDPI and ACS Style

Behzadi, M.; Mohamad, S.B.; Roozbeh, M.; Yunus, R.M.; Hamzah, N.A. Computing Two Heuristic Shrinkage Penalized Deep Neural Network Approach. Math. Comput. Appl. 2025, 30, 86. https://doi.org/10.3390/mca30040086

AMA Style

Behzadi M, Mohamad SB, Roozbeh M, Yunus RM, Hamzah NA. Computing Two Heuristic Shrinkage Penalized Deep Neural Network Approach. Mathematical and Computational Applications. 2025; 30(4):86. https://doi.org/10.3390/mca30040086

Chicago/Turabian Style

Behzadi, Mostafa, Saharuddin Bin Mohamad, Mahdi Roozbeh, Rossita Mohamad Yunus, and Nor Aishah Hamzah. 2025. "Computing Two Heuristic Shrinkage Penalized Deep Neural Network Approach" Mathematical and Computational Applications 30, no. 4: 86. https://doi.org/10.3390/mca30040086

APA Style

Behzadi, M., Mohamad, S. B., Roozbeh, M., Yunus, R. M., & Hamzah, N. A. (2025). Computing Two Heuristic Shrinkage Penalized Deep Neural Network Approach. Mathematical and Computational Applications, 30(4), 86. https://doi.org/10.3390/mca30040086

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