Assessment of Viticultural Biodiversity: Recovery of Indigenous Grapevine Genotypes from Ancient Vineyards of El-Kantara (Calceus Herculis) in Algeria
Abstract
1. Introduction
2. Materials and Methods
2.1. Plant Materials
2.2. DNA Extraction and SSR Analysis
2.3. Statistical Analysis on Genotyping Data
2.4. Ampelographic Characterization
2.5. Statistical Evaluation of Ampelographic Data
3. Results and Discussion
3.1. Genotyping of El-Kantara Varieties
| Sample | VVS2 | VVMD5 | VVMD7 | VVMD25 | VVMD27 | VVMD28 | VVMD32 | VrZAG62 | VrZAG79 | VMC6 E1 | VMC6G1 | VMCNG4b9 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ‘Farana Noir’ (‘Oul b’Ouzguer’) in [42] | 137 | 242 | 249 | 241 | 184 | 258 | 252 | 200 | 259 | / | / | / |
| 143 | 242 | 253 | 255 | 195 | 260 | 262 | 204 | 259 | / | / | / | |
| ‘Azbib’ (‘Taferielt’) in [8] | 133 | 240 | 249 | 239 | 195 | 243 | 252 | 194 | 257 | 141 | 191 | 176 |
| 135 | 242 | 249 | 241 | 195 | 260 | 272 | 204 | 257 | 165 | 191 | 176 | |
| ‘Taferielt’ in [43] | 133 | 240 | 249 | 239 | 195 | 243 | 252 | / | / | / | / | / |
| 135 | 242 | 249 | 241 | 195 | 260 | 272 | / | / | / | / | / | |
| ‘Farana Noir’ (‘Taferielt’) in our study | 133 | 240 | 249 | 239 | 195 | 243 | 252 | 194 | 257 | 141 | 191 | 176 |
| 135 | 242 | 249 | 241 | 195 | 260 | 272 | 204 | 257 | 165 | 191 | 176 |
3.2. Genetic Diversity
3.3. Phylogenetic Dendrogram
3.4. Phenotypic Diversity Among Studied Genotypes
3.4.1. Correlations Among Variables
3.4.2. PCA of Grape Genotypes Based on Quantitative Traits
3.4.3. Cluster Analysis
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
Abbreviations
| SSRs | Simple Sequence Repeats |
| VIVC | Vitis International Variety Catalogue |
| OIV | Organisation Internationale de la Vigne et du Vin |
| FAO | Food and Agriculture Organization of the United Nations |
| MAP | Molecular Alignment Panel |
| AD | Anno Domini |
| DNA | Deoxyribonucleic Acid |
| dNTP | Deoxynucleoside Triphosphate |
| HW | Hardy–Weinberg (Equilibrium) |
| PCA | Principal Component Analysis |
| CREA-VE | Council for Agricultural Research and Economics—Research Centre for Viticulture and Enology |
| PI | Probability of Identity |
| NJ | Neighbour-Joining |
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| Cultivar Code | Cultivar Name | Collection Site | Sample Name Meaning | Berry Colour | Primary Name (Correspondence by SSR) | VIVC Code |
|---|---|---|---|---|---|---|
| B4 | Anonymous | Bourj El-Ghoula | / | RS | Dabouki B. | 3309 |
| B12 | Datté | Bourj El-Ghoula | Dattier (in French) or date palm fruit (in English) | B | ||
| D1 | Anonymous | Dachera | / | B | ||
| D6 | Metateouile | Dachera | Long (in Algerian dialect) | NS | ||
| D15 | Muscat | Dachera | Aromatic grape | B | ||
| D18 | Chamerakha | Dachera | Arjun (in Algerian dialect), similar to a bunch of date palm fruits | B | ||
| D28 | Anonymous | Dachera | / | NS | ||
| F2 | Anonymous | El-Faidhe | / | B | ||
| F6 | Muscat | El-Faidhe | Aromatic grape | B | ||
| F7 | Elhamera | El-Faidhe | Red colour (in Algerian dialect) | RS | ||
| F8 | Anonymous | El-Faidhe | / | B | ||
| B3 | Anonymous | Bourj El-Ghoula | / | N | Danugue N. | 3425 |
| B7 | Anonymous | Bourj El-Ghoula | / | R | ||
| D17 | Anonymous | Dachera | / | N | ||
| B2 | Bayedha | Bourj El-Ghoula | Weight colour (in Algerian dialect) | B | Amokrane B. | 431 |
| B8 | Anonymous | Bourj El-Ghoula | / | B | ||
| B6 | Anonymous | Bourj El-Ghoula | / | R | Rassegui B. | 9923 |
| B9 | Anonymous | Bourj El-Ghoula | / | NS | ||
| C5 | Anonymous | Dachera | / | B | ||
| D20 | Anonymous | Dachera | / | B | ||
| D3 | Anonymous | Dachera | / | NS | Ahmeur bou Ahmeur B. | 140 |
| D10 | Anonymous | Dachera | / | B | ||
| D4 | Muscat | Dachera | Aromatic grape Sweet taste | B | Muscat of Alexandria B. | 8241 |
| D24 | Seouikiya | Dachera | (in Algerian dialect) | B | ||
| D11 | Anonymous | Dachera | / | NS | Louali B. | 24613 |
| D14 | Mestateouile | Dachera | Long (in Algerian dialect) | B | Afus Ali B. | 122 |
| F4 | Mestateouile | El-Faidhe | Long (in Algerian dialect) | B | ||
| D16 | Datté | Dachera | Dattier (in French), or date palm fruit (in English) | N | Cardinal N. | 2091 |
| F5 | Kahela | El-Faidhe | Black colour (in Algerian dialect) | N | Dattier de ST. Vallier B. | 3437 |
| F9 | Anonymous | El-Faidhe | / | NS | Taferielt N. | 12196 |
| F10 | Anonymous | El-Faidhe | / | NS | ||
| D12 | Zitouna | Dachera | Similar to black olive (in Algerian dialect) | N | Amer Bouamar (proposed in [21]) | / |
| D22 | Kahela | Dachera | Black colour (in Algerian dialect) | N | ||
| D23 | Anonymous | Dachera | / | NS | ||
| B1 | Anonymous | Bourj El-Ghoula | / | NS | Genotype 1, proposed name: Aïn Taher * | / |
| B5 | Anonymous | Bourj El-Ghoula | / | R | ||
| D13 | Anonymous | Dachera | / | B | ||
| D21 | Aïn Taher | Dachera | Blackberries as big as the beautiful eyes of a man (in Algerian dialect) | N | ||
| D27 | Anonymous | Dachera | / | N | ||
| F3 | Kahela seghira | El-Faidhe | Black colour and small size (in Algerian dialect) | N | ||
| B10 | Kahela | Bourj El-Ghoula | Black colour (in Algerian dialect) | N | Genotype 2, proposed name: Ineb Ganteri * | / |
| D5 | Anonymous | Dachera | / | B | ||
| B11 | Khadhera | Bourj El-Ghoula | Green colour (in Algerian dialect) | B | Genotype 3, proposed name: Datté Ganteri * | / |
| D2 | Datté | Dachera | Dattier (in French), or date palm fruits (in English) | N | ||
| D8 | Anonymous | Dachera | / | NS | ||
| D9 | Anonymous | Dachera | / | NS | ||
| D19 | Anonymous | Dachera | / | NS | ||
| D26 | Anonymous | Dachera | / | N | ||
| D7 | Seouikiya | Dachera | Sweet taste (in Algerian dialect) | NS | Genotype 4, proposed name: Seouikiya * | / |
| D25 | Anonymous | Dachera | / | B | Genotype 5, proposed name: Bayedha d’El-Kantara * | / |
| F1 | Eldjebel | El-Faidhe | The mountain | B | Genotype 6, proposed name: Ineb ElDjebel * | / |
| Locus | LG | N. of Obs | No Alleles | Ne Alleles | Ho | He | F(Null) | HW | I | PI |
|---|---|---|---|---|---|---|---|---|---|---|
| VVS2 | 11 | 51 | 9.000 | 6.612 | 0.889 | 0.849 | −0.047 | ns | 2.006 | 0.041 |
| VVMD5 | 16 | 51 | 7.000 | 6.056 | 1.000 | 0.835 | −0.198 | ns | 1.862 | 0.049 |
| VVMD7 | 7 | 51 | 6.000 | 3.580 | 0.722 | 0.721 | −0.002 | ns | 1.454 | 0.121 |
| VVMD25 | 11 | 51 | 6.000 | 3.340 | 0.667 | 0.701 | 0.048 | ns | 1.385 | 0.140 |
| VVMD27 | 5 | 51 | 5.000 | 3.393 | 0.722 | 0.705 | −0.024 | ns | 1.367 | 0.131 |
| VVMD28 | 3 | 51 | 8.000 | 5.023 | 0.944 | 0.801 | −0.179 | ns | 1.816 | 0.064 |
| VVMD32 | 4 | 51 | 7.000 | 3.560 | 0.722 | 0.719 | −0.004 | ns | 1.507 | 0.122 |
| VrZAG62 | 7 | 51 | 6.000 | 4.629 | 0.833 | 0.784 | −0.063 | ns | 1.620 | 0.080 |
| VrZAG79 | 5 | 51 | 9.000 | 4.378 | 0.722 | 0.772 | 0.064 | * | 1.808 | 0.073 |
| VMC6E1 | 2 | 51 | 8.000 | 5.102 | 0.778 | 0.804 | 0.033 | ns | 1.769 | 0.067 |
| VMC6G1 | 11 | 51 | 8.000 | 4.320 | 0.833 | 0.769 | −0.084 | * | 1.667 | 0.088 |
| VMCNG4b9 | 6 | 51 | 8.000 | 4.947 | 0.833 | 0.798 | −0.044 | ns | 1.812 | 0.067 |
| Mean | 7.250 | 4.578 | 0.806 | 0.771 | 1.673 | |||||
| Sum | 87.000 | 54.941 | 9667 | 9256 | 20.074 | |||||
| Cumulative | 8.04 × 10−14 |
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© 2026 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license.
Share and Cite
Achour, H.; Laiadi, Z.; Yahiaoui, W.; Fantin, V.; Olivotto, I.; Migliaro, D. Assessment of Viticultural Biodiversity: Recovery of Indigenous Grapevine Genotypes from Ancient Vineyards of El-Kantara (Calceus Herculis) in Algeria. Plants 2026, 15, 1381. https://doi.org/10.3390/plants15091381
Achour H, Laiadi Z, Yahiaoui W, Fantin V, Olivotto I, Migliaro D. Assessment of Viticultural Biodiversity: Recovery of Indigenous Grapevine Genotypes from Ancient Vineyards of El-Kantara (Calceus Herculis) in Algeria. Plants. 2026; 15(9):1381. https://doi.org/10.3390/plants15091381
Chicago/Turabian StyleAchour, Hanane, Ziane Laiadi, Wahiba Yahiaoui, Valentina Fantin, Irene Olivotto, and Daniele Migliaro. 2026. "Assessment of Viticultural Biodiversity: Recovery of Indigenous Grapevine Genotypes from Ancient Vineyards of El-Kantara (Calceus Herculis) in Algeria" Plants 15, no. 9: 1381. https://doi.org/10.3390/plants15091381
APA StyleAchour, H., Laiadi, Z., Yahiaoui, W., Fantin, V., Olivotto, I., & Migliaro, D. (2026). Assessment of Viticultural Biodiversity: Recovery of Indigenous Grapevine Genotypes from Ancient Vineyards of El-Kantara (Calceus Herculis) in Algeria. Plants, 15(9), 1381. https://doi.org/10.3390/plants15091381

