First Report of Colletotrichum fructicola Causing Fruit Rot and Leaf-Tip Dieback on Pineapple in Northern Thailand
Abstract
:1. Introduction
2. Results
2.1. Morphological Studies
2.2. Phylogenetic Analyses
2.3. Taxonomy
2.4. Pathogenicity Assay
3. Discussion
4. Materials and Methods
4.1. Sample Collection, Examination and Isolation
4.2. DNA Extraction and PCR Amplification
4.3. Phylogenetic Analyses
4.4. Pathogenicity Assay
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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Isolate | ITS | ACT | CHS-1 | GAPDH | TUB2 |
---|---|---|---|---|---|
P76 | 2/511 bp | 0/256 bp | 0/241 bp | 0/248 bp | 1/402 bp |
P76-3 | 3/511 bp | 1/256 bp | 0/241 bp | 0/248 bp | 0/402 bp |
Gene | Primer | Sequence (5′ → 3′) | References |
---|---|---|---|
ITS | ITS 5 ITS 4 | GGA AGT AAA AGT CGT AAC AAG G TCC TCC GCT TAT TGA TAT GC | [60] |
ACT | ACT-512F ACT-783R | ATG TGC AAG GCC GGT TTC GC TAC GAG TCC TTC TGG CCC AT | [61] |
CHS-1 | CHS-79F CHS-345R | TGG GGC AAG GAT GCT TGG AAG AAG TGG AAG AAC CAT CTG TGA GAG TTG | [61] |
GAPDH | GDF GDR | GCC GTC AAC GAC CCC TTC ATT GA GGG TGG AGT CGT ACT TGA GCA TGT | [62] |
TUB2 | BT-2Fd BT-4Rd | GTB CAC CTY CAR ACC GGY CAR TG CCR GAY TGR CCR AAR ACR AAG TTG TC | [63] |
Taxa | Strains | GenBank Accession Numbers | ||||
---|---|---|---|---|---|---|
ITS | GAPDH | CHS-1 | ACT | TUB | ||
Colletotrichum acidae | MFLUCC 17-2659 * | MG996505 | MH003691 | MH003694 | MH003697 | MH003700 |
C. aenigma | ICMP 18608 * | JX010244 | JX010044 | JX009774 | JX009443 | JX010389 |
C. aeschynomenes | ICMP 17673 *, ATCC 201874 | JX010176 | JX009930 | JX009799 | JX009483 | JX010392 |
C. alatae | CBS 304.67 *, ICMP 17919 | JX010190 | JX009990 | JX009837 | JX009471 | JX010383 |
C. alienum | ICMP 12071 * | JX010251 | JX010028 | JX009882 | JX009572 | JX010411 |
C. aotearoa | ICMP 18537 * | JX010205 | JX010005 | JX009853 | — | JX010420 |
C. arecicola | CGMCC 3.19667 * | MK914635 | — | MK935541 | MK935374 | MK935498 |
C. artocarpicola | MFLUCC 18-1167 * | MN415991 | MN435568 | MN435569 | MN435570 | MN435567 |
C. asianum | ICMP 18580 *, CBS 130418 | JX010196 | JX010053 | JX009867 | JX009584 | JX010406 |
C. analogum | YMF1.06943 * | OK030860 | OK513663 | OK513559 | OK513599 | OK513629 |
C. camelliae | CGMCC 3.14925, LC1364 * | KJ955081 | KJ954782 | MZ799255 | KJ954363 | KJ955230 |
C. cangyuanensis | YMF1.05001 * | OK030864 | OK513667 | OK513563 | OK513603 | OK513633 |
C. changpingense | CGMCC 3.17582 *, SA0016, MFLUCC 15-0022 | KP683152 | KP852469 | KP852449 | KP683093 | KP852490 |
C. chiangmaiense | MFLUCC 18-0945 * | MW346499 | MW548592 | MW623653 | MW655578 | — |
C. chrysophilum | URM 7368, CMM4268 * | KX094252 | KX094183 | KX094083 | KX093982 | KX094285 |
C. cigarro | ICMP 18539 * | JX010230 | JX009966 | JX009800 | JX009523 | JX010434 |
C. clidemiae | ICMP 18658 * | JX010265 | JX009989 | JX009877 | JX009537 | JX010438 |
C. cobbittiense | BRIP 66219 * | MH087016 | MH094133 | MH094135 | MH094134 | MH094137 |
C. conoides | CGMCC 3.17615, CAUG17, LC6226 * | KP890168 | KP890162 | KP890156 | KP890144 | KP890174 |
C. cordylinicola | MFLUCC 090551 *, ICMP 18579 | JX010226 | JX009975 | JX009864 | HM470234 | JX010440 |
C. dimorphum | YMF1.07309 * | OK030867 | OK513670 | OK513566 | OK513606 | OK513636 |
C. dracaenigenum | MFLUCC 19-0430 * | MN921250 | MT215577 | MT215575 | MT313686 | — |
C. endophytica | MFLUCC 13-0418, LC0324 * | KC633854 | KC832854 | MZ799261 | KF306258 | MZ673954 |
C. fici-septicae | MFLU 19-2770 * | MW114367 | MW183774 | MW177701 | MW151585 | — |
C. fructicola | ICMP 18581 *, CBS 130416 | JX010165 | JX010033 | JX009866 | FJ907426 | JX010405 |
C. fructicola | MFLUCC 17-0555 | MG646969 | MG646936 | MG646932 | MG646944 | MG646928 |
C. fructicola | MFLUCC 17-0613 | MG646968 | MG646935 | MG646933 | MG646939 | MG646927 |
C. fructicola | P76, MFLUCC 22-0181 | OQ048649 | OQ067350 | OQ067349 | OQ067348 | OQ067351 |
C. fructicola | P76-3, MFLUCC 22-0182 | OQ048650 | OQ067354 | OQ067353 | OQ067352 | OQ067355 |
C. fructivorum | Coll1414, BPI 884103, CBS133125 * | JX145145 | MZ664047 | MZ799259 | MZ664126 | JX145196 |
C. gloeosporioides | IMI 356878 *, ICMP 17821, CBS 112999 | JQ005152 | JQ005239 | JQ005326 | JQ005500 | JQ005587 |
C. gracile | YMF1.06939 * | OK030868 | OK513671 | OK513567 | OK513607 | OK513637 |
C. grevilleae | CBS 132879, CPC 15481 * | KC297078 | KC297010 | KC296987 | KC296941 | KC297102 |
C. grossum | CGMCC 3.17614, CAUG7, LC6227 * | KP890165 | KP890159 | KP890153 | KP890141 | KP890171 |
C. hebeiense | MFLUCC 13-0726 * | KF156863 | KF377495 | KF289008 | KF377532 | KF288975 |
C. hederiicola | MFLU 15-0689 * | MN631384 | — | MN635794 | MN635795 | — |
C. helleniense | CBS 142418, CPC 26844 * | KY856446 | KY856270 | KY856186 | KY856019 | KY856528 |
C. henanense | LC3030, CGMCC 3.17354, LF238 * | KJ955109 | KJ954810 | MZ799256 | KM023257 | KJ955257 |
C. horii | NBRC 7478 *, ICMP 10492, MTCC 10841 | GQ329690 | GQ329681 | JX009752 | JX009438 | JX010450 |
C. hystricis | CBS 142411, CPC 28153 * | KY856450 | KY856274 | KY856190 | KY856023 | KY856532 |
C. jiangxiense | CGMCC 3.17363 * | KJ955201 | KJ954902 | — | KJ954471 | KJ955348 |
C. kahawae | IMI 319418 *, ICMP 17816 | JX010231 | JX010012 | JX009813 | JX009452 | JX010444 |
C. makassarense | CBS 143664 * | MH728812 | MH728820 | MH805850 | MH781480 | MH846563 |
C. musae | CBS 116870 *, ICMP 19119, MTCC 11349 | HQ596292 | HQ596299 | JX009896 | HQ596284 | HQ596280 |
C. nanhuaensis | YMF1.04993 * | OK030870 | OK513673 | OK513569 | OK513609 | OK513639 |
C. nullisetosum | YMF1.06946 * | OK030872 | OK513675 | OK513571 | OK513611 | OK513641 |
C. nupharicola | CBS 470.96 *, ICMP 18187 | JX010187 | JX009972 | JX009835 | JX009437 | JX010398 |
C. oblongisporum | YMF1.06938 * | OK030874 | OK513677 | OK513573 | — | OK513643 |
C. parvisporum | YMF1.06942 * | OK030876 | OK513679 | OK513575 | OK513613 | OK513645 |
C. pandanicola | MFLUCC 17-0571 * | MG646967 | MG646934 | MG646931 | MG646938 | MG646926 |
C. perseae | CBS 141365 *, GA100 | KX620308 | KX620242 | MZ799260 | KX620145 | KX620341 |
C. proteae | CBS 132882 * | KC297079 | KC297009 | KC296986 | KC296940 | KC297101 |
C. pseudotheobromicola | MFLUCC 18-1602 * | MH817395 | MH853675 | MH853678 | MH853681 | MH853684 |
C. psidii | CBS 145.29 *, ICMP 19120 | JX010219 | JX009967 | JX009901 | JX009515 | JX010443 |
C. queenslandicum | ICMP 1778 * | JX010276 | JX009934 | JX009899 | JX009447 | JX010414 |
C. rhexiae | Coll1026, BPI 884112, CBS 133134 * | JX145128 | MZ664046 | MZ799258 | MZ664127 | JX145179 |
C. salsolae | ICMP 19051 * | JX010242 | JX009916 | JX009863 | JX009562 | JX010403 |
C. siamense | ICMP 18578 *, CBS 130417 | FJ972613 | FJ972575 | JX009865 | FJ907423 | FJ907438 |
C. syzygiicola | DNCL021, MFLUCC 10-0624 * | KF242094 | KF242156 | — | KF157801 | KF254880 |
C. tainanense | CBS 143666 * | MH728818 | MH728823 | MH805845 | MH781475 | MH846558 |
C. temperatum | CBS 133122 *, Coll883, BPI 884100 | JX145159 | MZ664045 | MZ799254 | MZ664125 | JX145211 |
C. tengchongense | YMF 1.04950 * | OL842169 | OL981264 | OL981290 | OL981238 | — |
C. theobromicola | CBS 124945 *, ICMP 18649 | JX010294 | JX010006 | JX009869 | JX009444 | JX010447 |
C. ti | ICMP 4832 * | JX010269 | JX009952 | JX009898 | JX009520 | JX010442 |
C. tropicale | CBS 124949 *, ICMP 18653, MTCC 11371 | JX010264 | JX010007 | JX009870 | JX009489 | JX010407 |
C. truncatum | CBS 151.35 * | GU227862 | GU228254 | GU228352 | GU227960 | GU228156 |
C. viniferum | GZAAS 5.08601 *, yg1 | JN412804 | JN412798 | — | JN412795 | JN412813 |
C. vulgaris | YMF 1.04940 * | OL842170 | OL981265 | OL981291 | OL981239 | — |
C. wuxiense | CGMCC 3.17894 * | KU251591 | KU252045 | KU251939 | KU251672 | KU252200 |
C. xanthorrhoeae | BRIP 45094 *, ICMP 17903, CBS 127831 | JX010261 | JX009927 | JX009823 | JX009478 | JX010448 |
C. xishuangbannaense | MFLUCC.19-0107 * | MW346469 | MW537586 | MW660832 | MW652294 | — |
C. yulongense | CFCC.50818 * | MH751507 | MK108986 | MH793605 | MH777394 | MK108987 |
C. yunajiangensis | YMF1.04996 * | OK030885 | OK513686 | OK513583 | OK513620 | OK513649 |
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Armand, A.; Hyde, K.D.; Jayawardena, R.S. First Report of Colletotrichum fructicola Causing Fruit Rot and Leaf-Tip Dieback on Pineapple in Northern Thailand. Plants 2023, 12, 971. https://doi.org/10.3390/plants12040971
Armand A, Hyde KD, Jayawardena RS. First Report of Colletotrichum fructicola Causing Fruit Rot and Leaf-Tip Dieback on Pineapple in Northern Thailand. Plants. 2023; 12(4):971. https://doi.org/10.3390/plants12040971
Chicago/Turabian StyleArmand, Alireza, Kevin David Hyde, and Ruvishika Shehali Jayawardena. 2023. "First Report of Colletotrichum fructicola Causing Fruit Rot and Leaf-Tip Dieback on Pineapple in Northern Thailand" Plants 12, no. 4: 971. https://doi.org/10.3390/plants12040971