Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species?
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Sampling
2.2. Sampling and Collection of Tissues and Cell Suspensions
2.3. Karyotype Preparation, DNA Extraction, and Genomic Analyses
2.4. Morphological and Morphometric Analyses
3. Results
3.1. Morphotypes and Cytotypes of P. rivularis Sensu Lato
3.2. Genomic Analysis
3.3. Morphological Analyses
3.4. Taxonomy
3.4.1. Psalidodon rivularis (Lütken 1875)
3.4.2. New Combinations: Psalidodon santae (Eigenmann, 1907) comb. nov.
3.4.3. New Species: Psalidodon terezinhae sp. nov.
3.4.4. New Species: Psalidodon velhochico sp. nov.
3.4.5. New Species: Psalidodon paiva sp. nov.
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| M1 | Morphotype 1 of Psalidodon rivularis |
| M2 | Morphotype 2 of Psalidodon rivularis |
| M3 | Morphotype 3 of Psalidodon rivularis |
| M4 | Morphotype 4 of Psalidodon rivularis |
| mtDNA | Mitochondrial DNA |
| NGS | Next-Generation Sequencing |
| LaGEEvo | Laboratory of Ecological and Evolutionary Genetics |
| UFV–CRP | Federal University of Viçosa–Rio Paranaíba Campus |
| DZUFMG | Department of Zoology at the Federal University of Minas Gerais |
| CT Scan | Computed Tomography scan |
| SISBIO | Biodiversity Authorization and Information System |
| CONCEA | National Council for Animal Control and Experimentation |
| MCTI | Ministry of Science, Technology, Innovations and Communications |
| CEUA | Ethics Committee on Animal Use |
| PCGs | Protein-coding genes |
| rRNA | Ribosomal RNA |
| tRNA | Transfer RNA |
| NCBI | National Center for Biotechnology Information |
| SRA | Sequence Read Archive |
| OTUs | Operational taxonomic units |
| PCA | Principal Component Analysis |
| LL | Scales along the longitudinal series/lateral line |
| SL | Standard length |
| BH | Body Height/depth |
| AFBL | Anal fin base length |
| HL | Head length |
| HH | Head Height/depth |
| OOL | Orbit–opercle length |
| POL | Postorbital length |
| CI | Confidence Interval |
| Mya | Millions of years ago |
| SD | Standard deviation |
| WSF | West of São Francisco River basin |
| ESF | East of São Francisco River basin |
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| Sample | Origin of the Library | Software | K-Mer | Seed |
|---|---|---|---|---|
| P. correntinus | SRR11147340 | NOVOplasty | 39 | MW495301.1 |
| P. aff. paranae Paranaíba | Lava-pés stream, Paranaíba River basin | NOVOplasty | 35 | KX609386.1 |
| P. rivularis M1 Lage | Lage stream, Abaeté River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M1 Bonito | Bonito stream, Borrachudo River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M1 Crico | Crico stream, Paracatu River basin | GetOrganelle | 115 | MT428069.1 |
| P. rivularis M1 Funchal | Funchal river, Indaiá River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M1 Borrachudo | Source of the Borrachudo River, Borrachudo river basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M1 Velhas | Source of the das Velhas River, das Velhas River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M1 Cipó | Meeting of the Mascates and Bocaina rivers, das Velhas River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M2 Funchal (WSF) | Funchal river, Indaiá River basin | NOVOplasty | 39 | MT428070.1 |
| P. rivularis M2 Lage (WSF) | Lage stream, Abaeté River basin | NOVOplasty | 39 | MT428070.1 |
| P. rivularis M2 Velhas (ESF) | Source of the das Velhas River, das Velhas River basin | NOVOplasty | 39 | MT428070.1 |
| P. rivularis M2 Cipó (ESF) | Meeting of the Mascates and Bocaina rivers, das Velhas River basin | NOVOplasty | 39 | MT428070.1 |
| P. rivularis M3 Canastra | Rasga Canga Waterfall, São Francisco River basin | NOVOplasty | 39 | MT428069.1 |
| P. rivularis M4 Bonito | Bonito stream, Borrachudo River basin | NOVOplasty | 39 | MT428070.1 |
| P. scabripinnis | SRR9985989 | NOVOplasty | 35 | KX609386.1 |
| Abbreviation | Measurement | Reference Unit |
|---|---|---|
| PD | Pre-dorsal fin distance | % of standard length |
| PP | Pre-pectoral fin distance | % of standard length |
| PV | Pre-pelvic fin distance | % of standard length |
| PA | Pre-anal fin distance | % of standard length |
| BH | Body height | % of standard length |
| CPH | Caudal peduncle height | % of standard length |
| CPL | Caudal peduncle length | % of standard length |
| AFBL | Anal fin base length | % of standard length |
| ODFD | Orbit to dorsal-fin origin distance | % of standard length |
| POL | Postorbital length | % of standard length |
| HL | Head length | % of standard length |
| OD | Orbit diameter | % of head length |
| SnL | Snout length | % of head length |
| UJL | Upper jaw length | % of head length |
| CPH2 | Caudal peduncle height 2 | % of body height |
| HH | Head height | % of body height |
| Morphotype | Sub-Basin | Collect Site | Number of Metaphases Analyzed | 2n | FN | Karyotypes | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| M | SM | ST | A | Bs | ||||||
| 1 | Abaeté | Lage stream | 53 | 46 + 0-2Bs | 84 | 8 | 22 | 8 | 8 | 0-2 |
| Tiros stream | 24 | 46 + 0-1B | 82 | 8 | 20 | 8 | 10 | 0-1 | ||
| Borrachudo | Bonito stream | 17 | 46 + 0-1B | 82 | 8 | 20 | 8 | 10 | 0-1 | |
| Source of the river | 5 | 46 + 0-1B | 82 | 8 | 20 | 8 | 10 | 0-1 | ||
| Indaiá | Funchal River | 30 | 46 + 0-1B | 86 | 8 | 24 | 8 | 6 | 0-1 | |
| Paracatu | Crico stream | 10 | 46 + 0-1B | 82 | 8 | 20 | 8 | 10 | 0-1 | |
| 2 | Abaeté | Lage stream | 20 | 50 + 0-1B | 90 | 8 | 24 | 8 | 10 | 0-1 |
| Indaiá | Funchal River | 11 | 50 | 86 | 8 | 20 | 8 | 14 | 0 | |
| Das Velhas | Cipó River | 10 | 50 | 88 | 8 | 22 | 8 | 12 | 0 | |
| 3 | São Francisco | Serra da Canastra | 31 | 50 + 0-1B | 84 | 10 | 18 | 6 | 16 | 0-1 |
| 4 | Abaeté | Abaeté Power Plant | 26 | 50 | 90 | 8 | 22 | 10 | 10 | 0 |
| Borrachudo | Bonito stream | 13 | 50 | 88 | 8 | 20 | 10 | 12 | 0-1 | |
| Morphotype 1 | Morphotype 2 ESF | Morphotype 2 WSF | Morphotype 3 | |
|---|---|---|---|---|
| Morphotype 2 ESF | PD, PP, PA, BH, CPH, CPL, AFBL, ODFD, POL, HL, SnL, UJL, HH, CPH2, LL | - | ||
| Morphotype 2 WSF | PP, PV, PA, BH, CPH, CPL, AFBL, ODFD, POL, HL, OD, HH, CPH2, LL | PD, PP, PV, POL, HL, SnL, HH, CPH2 | - | |
| Morphotype 3 | PP, BH, CPH, CPL, POL, HL, OD, SnL, HH, CPH2 | PD, PP, PA, BH, CPH, CPL, AFBL, POL, HL, OD, SnL, UJL, HH, LL | PP, PV, PA, BH, CPH, CPL, AFBL, POL, HL, OD, SnL, HH, LL | - |
| Morphotype 4 | PP, POL, HL, OD, LL | PD, PA, BH, CPL, AFBL, POL, OD, HH, CPH2 | PP, PA, BH, CPL, AFBL, POL, HL, OD, HH, CPH2 | CPH, HL, HH, CPH2, LL |
| Reference | ||||||
|---|---|---|---|---|---|---|
| P. rivularis m1 | P. rivularis m2 ESF | P. rivularis m2 WSF | P. rivularis m3 | P. rivularis m4 | ||
| Predicted | P. rivularis m1 | 100% | 0 | 0 | 0 | 0 |
| P. rivularis m2 ESF | 0 | 95.24% | 5.26% | 0 | 0 | |
| P. rivularis m2 WSF | 0 | 2.38% | 94.74% | 0 | 0 | |
| P. rivularis m3 | 0 | 0 | 0 | 100% | 0 | |
| P. rivularis m4 | 0 | 2.36% | 0 | 0 | 100% | |
| T. rivularis Lectotype N = 1 | T. rivularis Paralectotypes N = 2 | Non-Types N = 49 | Mean | SD | |
|---|---|---|---|---|---|
| Standard Length | 80.7 | 36.7–67.8 | 41.0–84.0 | 60.57 | 10.91 |
| % of standard length | |||||
| Predorsal distance | 47.08 | 51.66–52.39 | 46.14–51.86 | 49.29 | 1.57 |
| Prepectoral distance | 21.76 | 21.4–23.52 | 19.42–27.10 | 22.83 | 1.53 |
| Prepelvic distance | 44.26 | 42.28–47.78 | 43.28–50.23 | 46.43 | 1.85 |
| Preanal distance | 63.94 | 64.19–65.87 | 60.87–70.50 | 65.27 | 1.80 |
| Body height | 33.10 | 30.84–31.12 | 25.30–32.71 | 29.06 | 1.84 |
| Caudal-peduncle height | 11.49 | 9.95–11.48 | 9.32–14.72 | 11.85 | 0.92 |
| Caudal-peduncle length | 14.86 | 12.60–13.58 | 11.51–22.77 | 14.68 | 1.84 |
| Dorsal-fin length | 22.48 | 23.85 | 16.49–26.03 | 20.36 | 1.93 |
| Pectoral-fin length | 18.86 | 19.17 | 14.06–22.06 | 18.20 | 1.99 |
| Pelvic-fin length | 13.33 | 13.65–14.67 | 10.36–16.52 | 13.14 | 1.94 |
| Anal-fin length | 13.35 | 17.03 | 10.07–17.11 | 13.60 | 1.65 |
| Anal-fin base length | 22.63 | 22.83–23.85 | 16.44–24.17 | 21.37 | 1.81 |
| Orbit—dorsal-fin distance | 35.51 | 36.38–37.35 | 32.74–37.82 | 35.06 | 1.53 |
| Head length | 24.36 | 24.70–26.46 | 21.40–28.67 | 25.47 | 1.35 |
| Postorbital length | 10.60 | 9.67–11.08 | 9.35–13.11 | 11.27 | 0.84 |
| % of body height | |||||
| Head height | 74.89 | 66.69–75.34 | 67.45–83.72 | 75.03 | 3.96 |
| Caudal-peduncle height 2 | 34.72 | 32.27–36.89 | 34.06–52.60 | 40.92 | 3.99 |
| % of head length | |||||
| Orbit diameter | 28.04 | 28.99–33.91 | 26.17–39.24 | 32.07 | 2.72 |
| Snout length | 30.21 | 23.83–31.88 | 16.69–30.20 | 23.80 | 3.22 |
| Upper jaw length | 43.96 | 39.78–46.96 | 29.45–47.40 | 41.16 | 3.79 |
| Interorbital distance | - | 36.48 | 27.53–39.61 | 34.13 | 2.79 |
| H. santae Syntypes N = 2 | A. turmalinensis Types N = 20 | Non-Types N = 19 | Mean | SD | |
|---|---|---|---|---|---|
| Standard Length | 32.5–54.1 | 30–54.9 | 35.71–70.1 | 45.20 | 7.94 |
| % of standard length | |||||
| Predorsal distance | 53.72–55.00 | 49.38–53.29 | 48.98–54.15 | 51.47 | 1.46 |
| Prepectoral distance | 24.82–24.97 | 18.10–27.73 | 18.85–27.77 | 23.65 | 2.10 |
| Prepelvic distance | 47.70–50.34 | 44.74–49.28 | 43.34–50.34 | 47.19 | 1.82 |
| Preanal distance | 63.59–63.78 | 61.07–65.49 | 60.83–68.76 | 63.73 | 1.79 |
| Body height | 33.75–35.47 | 32.58–38.48 | 31.15–38.33 | 34.75 | 1.63 |
| Caudal-peduncle height | 12.42–12.50 | 12.32–15.46 | 9.86–14.13 | 13.04 | 1.03 |
| Caudal-peduncle length | 11.70–13.55 | 11.28–14.16 | 9.38–16.25 | 13.38 | 1.35 |
| Dorsal-fin length | 22.08–22.26 | 21.70–26.43 | 18.84–26.06 | 23.44 | 1.90 |
| Pectoral-fin length | 18.31 | 18.67–20.79 | 17.02–22.97 | 19.72 | 1.57 |
| Pelvic-fin length | 11.96–13.03 | 13.17–17.60 | 13.39–17.27 | 15.57 | 1.58 |
| Anal-fin length | 20.51–21.52 | 15.21–19.83 | 13.98–21.30 | 17.22 | 2.18 |
| Anal-fin base length | 23.74–26.84 | 23.86–28.45 | 20.57–26.45 | 24.89 | 1.82 |
| Orbit—dorsal-fin distance | 37.94–39.46 | 33.27–38.73 | 34.24–39.73 | 36.60 | 1.62 |
| Head length | 26.95–28.15 | 24.77–28.84 | 23.05–30.11 | 26.68 | 1.45 |
| Postorbital length | 11.41–12.36 | 10.31–14.57 | 10.67–14.04 | 11.90 | 0.91 |
| % of body height | |||||
| Head height | 71.75–73.00 | 65.14–78.79 | 63.67–77.79 | 71.04 | 3.87 |
| Caudal-peduncle height 2 | 35.02–37.05 | 34.35–46.14 | 29.39–41.35 | 37.58 | 3.11 |
| % of head length | |||||
| Orbit diameter | 29.52–32.98 | 29.57–39.06 | 24.37–35.41 | 33.08 | 3.20 |
| Snout length | 24.69–26.55 | 15.60–24.63 | 18.42–27.34 | 22.15 | 2.53 |
| Upper jaw length | 45.40–48.13 | 30.26–43.72 | 32.52–43.96 | 38.11 | 3.97 |
| Interorbital distance | 32.42–34.02 | 31.91–42.87 | 30.92–38.56 | 35.90 | 3.00 |
| Psalidodon terezinhae N = 19 | Psalidodon velhochico N = 16 | Psalidodon paiva N = 11 | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Holotype | Amplitude | Mean/SD | Holotype | Amplitude | Mean/SD | Holotype | Amplitude | Mean/SD | |
| Standard Length | 53.0 | 38.0–59.0 | 47.87/6.05 | 77.0 | 49.0–89.0 | 69.03/12.13 | 62.0 | 31.5–77.0 | 53.32/16.67 |
| % of standard length | |||||||||
| Predorsal distance | 49.28 | 47.26–53.41 | 50.15/1.41 | 49.63 | 47.60–51.43 | 49.80/0.80 | 51.66 | 48.09–51.66 | 49.66/0.89 |
| Prepectoral distance | 21.74 | 14.72–23.80 | 20.69/2.20 | 22.26 | 22.26–28.16 | 25.72/1.86 | 22.16 | 22.16–27.47 | 24.51/1.99 |
| Prepelvic distance | 44.70 | 41.93–49.34 | 45.30/1.90 | 45.98 | 43.90–49.19 | 46.88/1.57 | 48.15 | 42.55–48.15 | 45.94/1.63 |
| Preanal distance | 63.57 | 59.50–69.79 | 63.66/2.32 | 65.25 | 64.17–67.69 | 65.83/0.96 | 66.01 | 62.88–68.21 | 66.28/1.56 |
| Body height | 38.90 | 33.97–38.90 | 35.88/1.55 | 33.40 | 28.06–33.40 | 30.87/1.48 | 28.64 | 28.64–32.66 | 30.90/1.34 |
| Caudal-peduncle height | 14.56 | 11.23–14.56 | 12.51/0.78 | 11.20 | 9.10–12.71 | 11.03/0.92 | 12.02 | 11.41–13.16 | 12.42/0.46 |
| Caudal-peduncle length | 12.49 | 10.47–15.78 | 12.72/1.32 | 16.00 | 13.54–18.15 | 16.26/1.07 | 15.98 | 13.30–18.60 | 15.64/1.56 |
| Dorsal-fin length | 21.98 | 20.32–27.49 | 24.34/2.12 | 17.57 | 15.79–21.39 | 18.65/1.77 | - | 20.49–29.47 | 25.33/3.26 |
| Pectoral-fin length | 20.14 | 17.67–20.83 | 19.36/1.02 | 18.63 | 17.98–19.97 | 18.75/0.63 | 18.43 | 15.97–19.09 | 17.15/1.69 |
| Pelvic-fin length | 13.33 | 11.75–17.68 | 14.69/1.58 | 16.38 | 12.86–16.44 | 14.78/1.33 | 13.80 | 12.72–18.41 | 14.67/3.24 |
| Anal-fin length | 13.95 | 7.65–16.96 | 13.97/2.44 | 11.57 | 7.75–16.03 | 12.89/2.10 | - | 12.84–18.78 | 15.53/2.69 |
| Anal-fin base length | 27.68 | 22.48–29.16 | 26.17/1.83 | 21.51 | 16.21–23.26 | 19.96/1.74 | 18.88 | 15.51–21.64 | 19.34/1.85 |
| Orbit—dorsal-fin distance | 36.04 | 33.36–37.99 | 36.12/1.26 | 37.10 | 34.41–37.10 | 35.77/0.75 | 39.70 | 33.42–39.70 | 35.94/2.00 |
| Head length | 23.82 | 21.60–26.19 | 23.92/1.26 | 27.23 | 26.84–31.93 | 29.07/1.59 | 25.67 | 24.42–29.92 | 26.97/1.85 |
| Postorbital length | 10.46 | 8.60–11.00 | 09.93/0.71 | 14.80 | 13.80–17.25 | 15.10/0.98 | 13.71 | 12.24–14.52 | 13.25/0.69 |
| % of body height | |||||||||
| Head height | 59.24 | 59.24–69.30 | 64.18/2.35 | 78.61 | 75.44–87.22 | 80.98/3.72 | 79.22 | 68.34–79.25 | 75.59/3.81 |
| Caudal-peduncle height 2 | 37.43 | 31.34–38.01 | 34.87/1.89 | 33.54 | 30.82–41.84 | 35.76/2.83 | 41.97 | 35.28–43.16 | 40.27/2.37 |
| % of head length | |||||||||
| Orbit diameter | 39.11 | 29.20–39.11 | 34.22/2.01 | 23.83 | 23.22–33.18 | 28.06/2.88 | 25.12 | 23.27–34.72 | 27.82/3.76 |
| Snout length | 16.47 | 16.47–30.71 | 24.30/3.07 | 22.19 | 15.75–24.45 | 20.33/2.51 | 21.47 | 18.09–26.67 | 22.62/2.56 |
| Upper jaw length | 33.84 | 33.84–45.69 | 39.89/2.90 | 39.02 | 35.28–48.40 | 40.36/3.00 | 43.05 | 33.80–43.47 | 39.32/3.35 |
| Interorbital distance | 39.61 | 30.07–39.61 | 34.69/3.18 | 33.39 | 27.58–37.10 | 32.62/2.86 | 34.56 | 29.47–39.38 | 34.42/2.82 |
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Rodrigues-Oliveira, I.H.; de Assis, P.M.; Pimentel, L.G.P.; Soares, R.A.S.; Batista da Silva, I.; Rocha, R.R.; Menegidio, F.B.; Pasa, R.; Kavalco, K.F. Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species? Biology 2025, 14, 1793. https://doi.org/10.3390/biology14121793
Rodrigues-Oliveira IH, de Assis PM, Pimentel LGP, Soares RAS, Batista da Silva I, Rocha RR, Menegidio FB, Pasa R, Kavalco KF. Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species? Biology. 2025; 14(12):1793. https://doi.org/10.3390/biology14121793
Chicago/Turabian StyleRodrigues-Oliveira, Igor Henrique, Priscila Martins de Assis, Luiz Guilherme Pereira Pimentel, Rafael Augusto Silva Soares, Iuri Batista da Silva, Renan Rodrigues Rocha, Fabiano Bezerra Menegidio, Rubens Pasa, and Karine Frehner Kavalco. 2025. "Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species?" Biology 14, no. 12: 1793. https://doi.org/10.3390/biology14121793
APA StyleRodrigues-Oliveira, I. H., de Assis, P. M., Pimentel, L. G. P., Soares, R. A. S., Batista da Silva, I., Rocha, R. R., Menegidio, F. B., Pasa, R., & Kavalco, K. F. (2025). Unraveling a 150-Year-Old Enigma: Psalidodon rivularis (Acestrorhamphidae: Acestrorhampinae), a Species Complex or a Polymorphic Species? Biology, 14(12), 1793. https://doi.org/10.3390/biology14121793

