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Article

Identifying Targets for Antibiotic Use for the Management of Carbapenem-Resistant Acinetobacter baumannii (CRAb) in Hospitals—A Multi-Centre Nonlinear Time-Series Study

by
Zainab Said Al-Hashimy
1,2,
Barbara R. Conway
2,3,
Mubarak Al-Yaqoobi
4,
Faryal Khamis
5,
Ghalib Zahran Al Mawali
6,
Aisha Mahad Al Maashani
7,
Yaqoob Said Al Hadhrami
8,
Said Salim Al Alawi
9,
Mohammed Said Al Mamari
10,
William J. Lattyak
11,
Elizabeth A. Lattyak
11,
Motasem Aldiab
12,
Ian Gould
13,
José-María López-Lozano
14,15 and
Mamoon A. Aldeyab
2,*
1
Directorate of Pharmacy and Medical Stores, Khawlah Hospital, Muscat P.O. Box 90, Oman
2
Department of Pharmacy, School of Applied Sciences, University of Huddersfield, Huddersfield HD1 3DH, UK
3
Institute of Skin Integrity and Infection Prevention, University of Huddersfield, Huddersfield HD1 3DH, UK
4
Directorate of Laboratories, Department of Microbiology, Khawlah Hospital, Muscat P.O. Box 90, Oman
5
Adult Infectious Disease, Department of Medicine, Royal Hospital, Muscat P.O. Box 1331, Oman
6
Pharmaceutical Care Department, Royal Hospital, Muscat P.O. Box 1331, Oman
7
Department of Pharmacy and Medical Store, As Sultan Qaboos Hospital, Salalah P.O. Box 98, Oman
8
Department of Pharmacy and Medical Store, Nizwa Hospital, Nizwa P.O. Box 1222, Oman
9
Department of Pharmacy and Medical Store, Sur Hospital, Sur P.O. Box 966, Oman
10
Department of Pharmacy and Medical Store, Ibra Hospital, Ibra P.O. Box 162, Oman
11
Scientific Computing Associates Corp., River Forest, IL 60305, USA
12
Department of Computing, British Columbia Institute of Technology, Vancouver, BC V6B 3H6, Canada
13
Medical Microbiology Department, Aberdeen Royal Infirmary, Aberdeen AB25 2ZN, UK
14
Biomedical Research Institute of Murcia (IMIB-Arrixaca), 30120 Murcia, Spain
15
Research Group on Health Sciences Data Analysis, Universidad de Murcia, 30003 Murcia, Spain
*
Author to whom correspondence should be addressed.
Antibiotics 2022, 11(6), 775; https://doi.org/10.3390/antibiotics11060775
Submission received: 13 May 2022 / Revised: 3 June 2022 / Accepted: 5 June 2022 / Published: 7 June 2022
(This article belongs to the Section Antibiotics Use and Antimicrobial Stewardship)

Abstract

:
Solutions are needed to inform antimicrobial stewardship (AMS) regarding balancing the access to effective antimicrobials with the need to control antimicrobial resistance. Theoretical and mathematical models suggest a non-linear relationship between antibiotic use and resistance, indicating the existence of thresholds of antibiotic use beyond which resistance would be triggered. It is anticipated that thresholds may vary across populations depending on host, environment, and organism factors. Further research is needed to evaluate thresholds in antibiotic use for a specific pathogen across different settings. The objective of this study is to identify thresholds of population antibiotic use associated with the incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) across six hospital sites in Oman. The study was an ecological, multi-centre evaluation that involved collecting historical antibiotic use and CRAb incidence over the period from January 2015 to December 2019. By using non-linear time-series analysis, we identified different thresholds in the use of third-generation cephalosporins, piperacillin-tazobactam, aminoglycoside, and fluoroquinolones across participating hospitals. The identification of different thresholds emphasises the need for tailored analysis based on modelling data from each hospital. The determined thresholds can be used to set targets for each hospital AMS, providing a balance between access to these antibiotics versus controlling CRAb incidence.

1. Introduction

Antibiotics are one of the essential medical interventions that reduce human morbidity and mortality; however, the overuse and misuse of antibiotics contribute to the spread of resistance and threaten many achievements of modern medicine [1,2,3,4]. A recent comprehensive analysis showed that the global burden associated with drug-resistant infections in 2019 was an estimated 4.95 million deaths, of which 1.27 million deaths were directly attributable to drug resistance [3]. The link between antibiotic use and the subsequent selection and spread of antibiotic resistance is well established [1,5,6,7,8]. This link contributes to reducing their therapeutic effect. Considering a lack in newly approved antibiotics, it is vital to conserve the effectiveness of existing antibiotics. Solutions are needed to inform (AMS) to balance access to effective antimicrobials with the need to control antimicrobial resistance [9,10,11,12].
The antimicrobial resistance (AMR) situation in Oman is similar to the observed AMR globally [13]. In 2017, the Ministry of Health (MOH) in Oman launched the Oman antimicrobial surveillance system (OMASS) as part of a national action plan for the containment of antimicrobial resistance. The report showed the rate of bacterial resistance to antibiotics in hospitals in Oman. The surveillance included six hospitals in Oman [14].
OMASS reported that the CRAb were resistant to imipenem and meropenem in 73% and 81% of the cases, respectively. Also, Acinetobacter baumannii has revealed high resistance to aminoglycosides, the β-lactam group of antibiotics, and fluoroquinolones. In 2017, the carbapenem-resistant Enterobacteriaceae (CRE) rate in Oman was 12/1000 of patients with bacteraemia, and the mortality rate was 32% [14]. In the following year, the CRAb rate was increased to 75.5% for imipenem and 84% for meropenem [15].
The rate of carbapenem resistance to gram-negative bacteria tended to rise during the last 20 years. In one study, which was done in a teaching hospital in Oman, it was found that the CRAB rate increased from 67% to 86% between 2007–2016. The study also showed that 30-day all-cause mortality was high in CRAb (40.2%) [16].
WHO developed hand hygiene care guidelines which helped to implement good practice and reduce the transmission of nosocomial infections to the patient and health care provider [17]. Many studies showed that alcohol-based hand rubs reduce the rate of transmission of the infection to the patients. Health-care-associated infections (HAIs) can be prevented by implementing hand hygiene strategies that involved alcohol-based hand rubs, which will reduce AMR and mortality among admitted patients [18,19].
Studies have previously reported on the development of non-linear relationships between antibiotic use and resistance to propose thresholds of antibiotic use beyond which resistance would be triggered [1,9,10,11,20,21,22]. A recently published study determined a threshold in third-generation cephalosporin and carbapenem use, and the incidence of CRAb in hospitals in Jordan [11]. It is anticipated that thresholds may vary across populations depending on host, environment, and organism factors [9,10], therefore it would be useful to evaluate thresholds for specific pathogens across different settings. However, this is the first study to measure thresholds between antibiotic use and CRAb incidence across different hospitals. CRAb infections are associated with high mortality and few treatment options; addressing AMR required coordinated national and international efforts [23,24,25].
The aim of this study was to identify thresholds of population antibiotic use associated with the incidence of CRAb in six hospitals. The six hospitals, located in Oman, were reasonably similar in terms of being country-specific but varied in sizes, specialties, volumes of antibiotics, and CRAb incidence rates. In addition, we aimed to measure thresholds in associations between the use of alcohol-based hand rub (ABHR) and CRAb incidence rates in participating hospitals.

2. Results

The average monthly CRAb incidence (normalised per 100 occupied bed days (OBD) for participating hospitals was as follows: Royal Hospital (0.030), Khawlah Hospital (0.108), As Sultan Qaboos Hospital (0.140), Nizwa Hospital (0.087), Sur Hospital (0.187), and Ibra Hospital (0.104). The average monthly OBD for each hospital is shown in Table S1. The use of certain antibiotics was positively associated with the incidence of CRAb cases. The use of third-generation cephalosporins was associated with CRAb cases in the Royal Hospital and Nizwa Hospital, while piperacillin-tazobactam was identified in Khawlah Hospital, Sur Hospital, and Ibra Hospital. The use of aminoglycoside was associated with CRAb cases in Khawlah Hospital, As Sultan Qaboos Hospital, and Nizwa Hospital, while fluoroquinolone use was identified in As Sultan Qaboos Hospital (Table 1). The median use of these antibiotics and the determined lag effects (delay necessary to observe the effect in months) in each hospital are shown in Table 1.
By using non-linear time-series analysis, we identified different thresholds for third-generation cephalosporins, piperacillin-tazobactam, aminoglycoside, and fluoroquinolones across the participating hospitals. For the Royal Hospital, the use of third-generation cephalosporins should not exceed 6 defined daily dose (DDD)/100 OBD. In addition, ABHR reduced CRAb incidence up to 5.1 L/100 OBD, with no further impact beyond this threshold. For Sur Hospital, we identified a threshold for piperacillin-tazobactam, and its use should not exceed 3 DDD/100 OBD. In addition, ABHR had a significant impact on reducing CRAb incidence when its use exceeded 2.6 L/100 OBD. Similar interpretations can be made for the identified antibiotics for the remaining hospitals (Table 1).
The identified thresholds can be translated into targets to inform hospital policies and antimicrobial stewardship (Table 2). Using the standard approach, the findings suggest that the use of certain antibiotics should be maintained below the identified thresholds in a number of hospitals. However, some hospitals will need to reduce their antibiotic use by certain percentages; for example, Khawlah Hospital (−20% piperacillin-tazobactam), As Sultan Qaboos Hospital (−14% fluoroquinolones), and Ibra Hospital (−27% piperacillin-tazobactam). The conservative approach recommends further reductions in the use of certain antibiotics (Table 2).
The identified thresholds for antibiotic and ABHR use and their effect on the incidence trends of CRAb in each hospital are shown in Figure 1. The association between identified variables and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, is presented in Supplementary Materials Figures S1–S6. Graphs for the identified antibiotics, ABHR, and the incidence of CRAb on a monthly basis are presented in Supplementary Materials Figures S7–S12.

3. Discussion

This study found a non-linear association between the population use of specific antibiotics, ABHR, and CRAb incidence in six hospitals in Oman. Different antibiotics were associated with the incidence of CRAb, and different thresholds were identified across participating hospitals. Based on the identified thresholds, it was possible to provide hospital-specific quantitative targets for antibiotic stewardship improvement. Non-linear time series analysis methods have been applied to assess the relationship between antibiotic use and resistance in previously published research [10,11]
The assessment of the relationship between antibiotic use and the subsequent development of antimicrobial resistance necessitates the use of appropriate statistical methods [5,26,27]. Time series analysis, utilising linear methods, was applied to study the relationship between population antibiotic use and resistance [5,26]. However, theoretical and mathematical models suggest that non-linear relationships between antibiotic use and resistance are more frequent [9,28]. Therefore, non-linear analysis provides a more accurate estimate of the relationship between antibiotic use and resistance, enabling generations of thresholds that can be used to inform antimicrobial stewardship. Non-linear time-series analysis enables adjustment of the non-independence of serial observations inherent in antibiotic use and resistance time series and allows identification of temporality in associations and lag effects (delays needed to observe an effect).
The use of third-generation cephalosporins, piperacillin-tazobactam, aminoglycoside, and fluoroquinolones were associated with the incidence of CRAb in the study site hospitals. Evaluating the relevant resistance data obtained from the hospitals’ microbiology departments showed that CRAb isolates were resistant to the identified antibiotics (Table S2). Our findings are consistent with other published studies; nevertheless, the determined thresholds between identified antibiotics and CRAb incidence were different [10,11]. Thresholds may vary across populations depending on host, environment, and organism factors [10]. Although the present analysis was conducted on the same pathogen in one country, different thresholds were identified. These findings indicate the requirement to conduct thresholds analysis that is tailored to each hospital, taking into account differences in volumes of antibiotic use, microbiological and resistance profiles, and relevant healthcare systems and policies. In 2016, MOH launched the national antimicrobial guideline which includes therapeutics and surgical antimicrobial prophylaxis which guide the prescriber in the choice and duration of the antimicrobial agent [29,30]. Some of the hospitals are following international guidelines or hospital-specific guidelines.
The infection control department in each hospital is responsible for infection control precautions, isolations policy for CRAb, hand hygiene audits and round, and multidrug-resistant organism (MDRO) surveillance. The clinical microbiologists and clinical pharmacists are advising and monitoring the antibiotic choice, dose, and duration for the individual case [31]. Different antibiotic stewardship and infection control activities are shown in Table S3.
In the Royal Hospital, our findings showed that ABHR had an effect on reducing CRAb incidence up to a certain threshold, with no further impact measured beyond this (i.e., a ceiling effect). Similar findings were observed with certain antibiotics in another study in which it was proposed that inclusion of additional data may resolve it [10]. For Sur Hospital, ABHR had significant reduction on CRAb incidence when its use exceeded certain thresholds. The value of ABHR on reducing healthcare-acquired infections has been demonstrated in several studies [32,33,34].
Previous studies in Oman and the region reported frequent prescribing of third-generation cephalosporins, piperacillin/tazobactam, and fluoroquinolones [35,36,37,38,39,40]. In a recent point prevalence survey in the Middle East region, the authors demonstrated high prevalence rates of infections and high levels of resistance to antimicrobials [41]. Hospitals require guidance to inform their antimicrobial stewardship teams. Based on the finding of this study, the role of the AMS team begins by monitoring the specific antibiotic prescriptions in each hospital and updating the policy to reduce the consumption of antibiotics. Colistin and tigecycline are the drugs of choice in the sensitivity report used in the CRAb management. Therefore, with the limited available antibiotic choices and the increase in the use of antibiotics, certain strategies were applied e.g., pharmacokinetic and pharmacodynamic approaches [42,43]. Our study offers a new way to set targets for antibiotic use in hospitals by providing quantitative targets for antibiotic use that can inform antimicrobial stewardship [10]. Our findings recommended that the use of certain antibiotics should be maintained below the identified thresholds in a number of hospitals—that is to monitor its use with the aim of not exceeding the determined threshold. However, we provided targets for antibiotic use for some of the participating hospitals, for example, Khawlah Hospital (−20% piperacillin-tazobactam), As Sultan Qaboos Hospital (−14% fluoroquinolones), and Ibra Hospital (−27% piperacillin-tazobactam).
Many studies showed a reduction in the incidence of CRAb when implementing the infection control interventions, e.g., hand hygiene rounds, surveillance culture, contact precautions, environmental cleaning, and disinfection procedures. The infection control department has a big role in the hospital to reduce the HAIs and should extend the effort in applying the interventions to avoid an increase in the rate of CRAb [44,45].
This study identified antibiotics that are associated with CRAb and has provided quantitative targets for antimicrobial stewardship in the participating hospitals. Estimation of thresholds using both a standard and a conservative approach means that targets for control of resistance can be adjusted according to the hospital antimicrobial management team’s priorities using the lower limit of estimated threshold for stricter control of resistance. However, if there are challenges with implementation, then a standard approach can be adopted. As outlined by Lopez–Lozano and colleagues [10], and because antibiotic exposure may be important for individual patients, or cause changes in reservoirs of resistant pathogens in environments or hosts, it is important not to assume that all antibiotic use below thresholds is safe; thresholds should be used as a guide, rather than as strict limits, to achieve a balance between restriction of identified antibiotics and controlling resistance.
The present study used rigorous analysis methods, and included all hospitalized patients along with utilising routinely collected data; therefore selection and information bias are unlikely. However, the study has some limitations. It was not possible to adjust for potential changes in patient population and case mix. The addition of further explanatory variables can contribute to the improvement of presented models; for example, data on infection prevention and control activities (surface and medical equipment disinfection), and proxy measures for changes in patient population and case mix [46,47]. In this study, the latter data was not available. The findings of this study are related to the population of the Middle East, which may differ from other populations. In addition, it was not possible to capture patients that were admitted from the community with a known Acinetobacter baumannii infection. Further assessment, where sufficient observations are available, at the hospital’s unit level is needed as it may shape antibiotic use recommendations by providing specific thresholds (for example, intensive care unit versus other hospital units).

4. Methods

4.1. Study Design and Population

This was an ecological, multi-centre study that involved retrospective data collection. Six hospitals, from Oman, participated in this study: (i) Royal Hospital, (ii) Khawlah Hospital, (iii) As Sultan Qaboos Hospital, (iv) Nizwa Hospital, (v) Sur Hospital, and (vi) Ibra Hospital, and their general characteristics are summarised in the Supplementary Materials (Table S1). All inpatient (adult and paediatric) admissions were included in the study population. The time-series analysis requires at least 60 monthly observations (5 years) of antibiotic use and microbiological data [10,11], with all the hospitals being able to provide consistent monthly data for the explanatory and outcome variables for the entire study period (5-year dataset), i.e., January 2015 to December 2019, except for Sur Hospital (March 2015 to December 2019). For the purposes of this study, it was hypothesized that the use of carbapenems, fluoroquinolones, piperacillin/tazobactam, third-generation cephalosporins, and aminoglycosides could explain variations in the outcome of interest (incidence of CRAb cases). The aforementioned antibiotics were identified a priori on the basis of their resistance profiles (Table S2) and published evidence of their role as risk factors for driving the incidence of CRAb in hospitals [10,11]. In addition, ABHR was included in the analysis as one of the explanatory factors.

4.2. Microbiology and Pharmacy Data

Identification of isolates and antibiotic susceptibility tests were performed according to standard microbiological procedures and were in line with the Clinical and Laboratory Standards Institute (CLSI) guidelines [48,49]. Patients with an A. baumannii isolate from a clinical sample (i.e., blood, urine, fluid, wound, biopsy, cerebrospinal fluid (CSF), central venous pressure (CVP) line, catheter line, cannula line, ventriculoperitoneal (VP) shunt, sputum, and endotracheal tube (ET) secretion) that was resistant to meropenem were designated as a CRAb case. Infection control screening swabs were excluded. Duplication in CRAb cases were removed and any isolate identified within 30 days of a previous isolate from the same patient, with the same identification was considered as the same case. Data for antibiotic use quantities were obtained on a monthly basis and were converted into the number of DDD per 100 OBD. The DDD was calculated according to the classification of antimicrobials for systemic use (J01) in the WHO/ATC index [50]. The monthly consumption of ABHR (in liters) was also determined. All microbiological and pharmacy data was obtained from the Hospital Information Management System (Al Shifa 3 Plus). Data on the monthly incidence of CRAb cases and ABHR (L) was normalized per 100 OBD.

4.3. Statistical Analysis

The primary method employed to determine thresholds in antibiotic use levels that alter the trend in CRAb incidence rates was a flexible nonparametric regression modelling method, known as multivariate adaptive regression splines (MARS) [51]. This modelling strategy provides a generalized approach to recursive partitioning regression. A major assumption of a linear process is that the coefficients remain stable across all levels of the explanatory variables and, in the case of a time series, across all time periods. The MARS method is a very useful procedure when it is suspected that the model’s coefficients have different optimal values across different levels of the explanatory variables. It can detect and fit models where there are distinct breaks in the data, such as are found if there is a change in the underlying probability density function of the coefficients and where there are complicated variable interactions.
A more formal description of MARS is illustrated by first assuming a nonlinear model of the form
y = f ( x 1 , , x m ) + e
where subscript m signifies the number of explanatory variables x 1 , , x m and e is random error. The MARS algorithm sets out to approximate the nonlinear function by
f ^ ( X ¯ ) = j = 1 s c j K j ( X ¯ ) ,
where f ^ ( X ¯ ) is an additive function of the product basis functions { K j ( X ¯ ) } j = 1 s associated with the s sub-regions { R j } j = 1 s and c j is the coefficient for the j th product basis function. It is the algorithm that allows MARS to efficiently partition a dataset into what we can in simplest form consider a piece-wise regression model. For example, a MARS model may be partitioned around the breakpoint value of 100, such as
y = α + β 1 x + e       for   x > 100 ,   and
y = α + β 2 x + e       for   x < 100
which in MARS notational form would be
y = α + c 1 ( x τ * ) + + c 2 ( τ * x ) + e
where τ * = 100 is the threshold value and (∙)+ and (∙) are the truncated spline functions which take on the value 0 if the expression inside (∙) is negative or its actual value if the expression inside (∙) is >0. Here c 1 β 1 and c 2 β 2 .
Although MARS was the main method used, alternative methods were also adopted to confirm thresholds in explanatory variables and to enhance the MARS models and perform residual diagnostics. These were generalized additive models (GAM), segmented time-series models or threshold transfer function models, and segmented regression or piecewise regression models [52,53,54,55].
Initial analysis used GAM to explore curvilinear relationships and approximate threshold levels. The GAM estimation uses nonparametric fitting based on a scatter plot smoother to fit a polynomial relationship between two or more variables. The smoother summarizes the trend of the response variable as a function of the predictor variables by iteratively smoothing partial residuals in a process. Again, if we assume a nonlinear model of the form
y = f ( x 1 , , x m ) + e
where the individual explanatory variables, x 1 , ,   x m , and predictor variable, y, are one-dimensional vectors. A GAM model [52,55,56] can be written as
E ( y | x 1 , x 2 , , x k ) = α 0 + j = 1 k a j ( x j ) + e
where α j (∙) are smoothing functions standardized so that E j ( x j ) = 0 .
After GAM was used to explore nonlinearities and approximate thresholds, MARS models were used to further explore thresholds and lagged relationships including lagged relationships in the response variable itself. Feasible models produced from the MARS modelling stage were then restated as threshold transfer function models where autoregressive moving average (ARMA) components can be added to the model to handle complex serial correlation, outlier detection and adjustment can be applied, and the model can be generally refined. A multiple-input transfer function takes on the general form
Y t = C + ω 1 ( B ) δ 1 ( B ) X 1 t + ω 2 ( B ) δ 2 ( B ) X 2 t + + ω m ( B ) δ m ( B ) X m t + θ ( B ) ϕ ( B ) a t
where (B) is the backshift operator consistent with Box and Jenkins notation [53,57,58]. The rational transfer function for each input variable has the form
Y t = C + ω ( B ) δ ( B ) X t + N t , N t = θ ( B ) ϕ ( B ) a t
where ω ( B ) = ( ω 0 + ω 1 B + + ω h - 1 B h - 1 ) B b , δ ( B ) = 1 - δ 1 B - - δ r B r , ϕ ( B ) = 1 - ϕ 1 B - - ϕ p B p , and θ ( B ) = 1 - θ 1 B - - θ q B q .
Additionally, the ϕ ( B ) and θ ( B ) terms are not limited as simple and may be in multiplicative form. In the above model, N t is referred to as the disturbance, and a t is a sequence of random shocks that are independently and identically distributed. The shocks are assumed to be independent of X t and its associated lags.
In addition, confirmatory analysis was conducted on the identified thresholds by using segmented regression and the interval for the breakpoint parameter was derived from a gradient estimation approach [55].
Patient treatments per month were estimated to translate the identified thresholds into recommendations for informing population-specific antimicrobial stewardship policies. The identified threshold (DDD/100 OBD) was multiplied by the size of the population (OBD), and then divided by 7 DDD (i.e., average patient treatment). Two approaches were followed to present estimates for informing antimicrobial stewardship policies: a standard approach, based on using the identified threshold and a conservative approach, based on using the lower limit as the threshold. All analysis was carried out by using the SCA Statistical System version 8.2 (Scientific Computing Associates Corp., River Forest, IL, USA) and R software (R Foundation for Statistical Computing, Vienna, Austria).

5. Conclusions

In conclusion, we measured thresholds in the association between third-generation cephalosporins, piperacillin-tazobactam, aminoglycoside, and fluoroquinolones and the CRAb incidence in six hospitals. These hospitals had different sizes, specialties, volumes of antibiotics, and CRAb incidence rates. Identification of different thresholds, due to differences between the hospitals in these factors emphasises the need to carry out tailored analysis, based on modelling data in each hospital. The identified thresholds can be used to set targets for hospital antibiotic stewardship. The complete restriction of antibiotics in clinical practice is challenging and would likely lead to compensatory use of different antibiotics (squeezing the balloon) bringing other resistance issues [59]. By providing thresholds it should be possible to establish a balance between antibiotic use and CRAb incidence, while maintaining diversity of prescribing. Further studies are needed to assess the feasibility of identifying and implementing thresholds into routine clinical practice and to assess their value in informing antimicrobial stewardship and controlling resistance rates in hospitals.

Supplementary Materials

The following are available online at https://www.mdpi.com/article/10.3390/antibiotics11060775/s1. Table S1: General characteristics of participating hospitals from Oman; Table S2: Rates of non-susceptibility to certain selecting antibiotics in carbapenem-resistant Acinetobacter baumannii isolates from participating hospitals in Oman; Table S3: General characteristics of antibiotic stewardship and infection control in participating hospitals from Oman; Figure S1: Contribution charts illustrate the relationship between third-generation cephalosporins, alcohol-based hand rub and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, Royal Hospital; Figure S2: Contribution charts illustrate the relationship between piperacillin-tazobactam, aminoglycoside and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, Khawlah Hospital; Figure S3: Contribution charts illustrate the relationship between aminoglycoside, fluoroquinolones and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, As Sultan Qaboos Hospital; Figure S4: Contribution charts illustrate the relationship between third-generation cephalosporins, aminoglycoside and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, Nizwa Hospital; Figure S5: Contribution charts illustrate the relationship between piperacillin-tazobactam, alcohol-based hand rub and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, Sur Hospital; Figure S6: Contribution charts illustrate the relationship between piperacillin-tazobactam and the incidence of CRAb, showing the estimated effect when use levels exceed their respective threshold value, Ibra Hospital; Figure S7: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus third-generation cephalosporins use and use of alcohol-based hand rub, Royal Hospital, January 2015–December 2019; Figure S8: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus use of aminoglycosides and piperacillin–tazobactam, Khawlah Hospital, January 2015-December 2019; Figure S9: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus use of aminoglycosides and fluoroquinolones, As Sultan Qaboos Hospital, January 2015-December 2019; Figure S10: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus third-generation cephalosporins and aminoglycosides use, Nizwa Hospital, January 2015-December 2019; Figure S11: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus piperacillin-tazobactam use and alcohol-based hand rub use, Sur Hospital, March 2015-December 2019; Figure S12: Monthly incidence of carbapenem-resistant Acinetobacter baumannii (CRAb) versus piperacillin-tazobactam use, Ibra Hospital, January 2015–December 2019.

Author Contributions

Conceptualization, Z.S.A.-H., B.R.C., I.G., J.-M.L.-L. and M.A.A.; methodology, Z.S.A.-H., B.R.C., I.G., J.-M.L.-L. and M.A.A.; software, Z.S.A.-H., W.J.L. and M.A.A.; validation, Z.S.A.-H., B.R.C., M.A.-Y., F.K., G.Z.A.M., A.M.A.M., Y.S.A.H., M.S.A.M., W.J.L., E.A.L., M.A., I.G., J.-M.L.-L. and M.A.A.; acquisition, situational analysis, or interpretation of data: all authors; investigation: all authors; formal analysis, Z.S.A.-H., W.J.L., E.A.L., M.A. and M.A.A.; resources, Z.S.A.-H., B.R.C. and M.A.A.; writing—original draft preparation, Z.S.A.-H.; writing—review and editing, all authors; supervision, B.R.C. and M.A.A. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Institutional Review Board Statement

The study was approved by the Ministry of Health in Oman (MoH/CSR/21/24297) and by the University of Huddersfield (SAS-SREIC 13.04.21-1) research ethics committees.

Informed Consent Statement

Not applicable.

Data Availability Statement

Collected data for this study are published in this article.

Conflicts of Interest

The authors declare no conflict of interest.

Abbreviations

ABHRAlcohol-Based Hand Rub
AMRAntimicrobial Resistance
AMSAntimicrobial Stewardship
ARMAAutoregressive Moving Average
ATCAnatomical Therapeutic Classification
CLSIClinical and Laboratory Standards Institute
CRAbCarbapenem-Resistant Acinetobacter Baumannii
CRECarbapenem-resistant Enterobacteriaceae
CSFCerebrospinal fluid
CVPCentral venous pressure
DDDDefined Daily Dose
ETEndotracheal tube
GAMGeneralized Additive Models
HAIsHealth-care-associated infections
J01Antibacterials for systemic use
LLiter
MARSMultivariate Adaptive Regression Splines
MDRAbMultidrug-resistant Acinetobacter baumannii
MDROMultidrug-resistant organism
MOHMinistry of Health
OBDOccupied Bed-Days
OMASSOman Antimicrobial Surveillance System
SCAScientific Computing Associates
VPVentriculoperitoneal
WHOWorld Health Organization

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Figure 1. Charts illustrating the identified thresholds for antibiotic (A,CI,K) and ABHR (B,J) use and their effect on CRAb incidence trends, January 2015 to December 2019 in hospitals in Oman. The thick black line is the fitted linear regression line of the unsegmented data. The thin black line is the fitted linear regression line focusing on x > threshold and the dashed black line focuses on x < threshold.
Figure 1. Charts illustrating the identified thresholds for antibiotic (A,CI,K) and ABHR (B,J) use and their effect on CRAb incidence trends, January 2015 to December 2019 in hospitals in Oman. The thick black line is the fitted linear regression line of the unsegmented data. The thin black line is the fitted linear regression line focusing on x > threshold and the dashed black line focuses on x < threshold.
Antibiotics 11 00775 g001aAntibiotics 11 00775 g001b
Table 1. Results of multivariable non-linear time-series analyses, January 2015 to December 2019.
Table 1. Results of multivariable non-linear time-series analyses, January 2015 to December 2019.
HospitalsTermsMedian Use
(IQ Range) *
Lag (Months)Threshold (95% Confidence Limit)Relationship to ThresholdRegression Coefficient (95% CI)p Value
a. Royal Hospital
(R2 = 38.2)
ConstantN/AN/AN/AN/A0.024 (0.020 to 0.029)<0.0001
Third-generation cephalosporins 4.82 (4.24–5.85)15.87 (5.39 to 7.64)Above0.017 (0.010 to 0.024)<0.0001
Alcohol-based hand rub5.03 (4.20–5.50)35.09 (2.20 to 5.11)Below0.008 (0.003 to 0.013)0.0025
b. Khawlah Hospital
(R2 = 47.58)
ConstantN/AN/AN/AN/A0.074 (0.057 to 0.091)<0.0001
Piperacillin-tazobactam3.40 (2.87–3.83)22.99 (2.35 to 3.86)Above0.029 (0.010 to 0.047)0.0039
Aminoglycosides0.92 (0.66–1.22)10.84 (0.81 to 1.40)Above0.053 (0.024 to 0.081)0.0005
AutoregressiveN/A1N/AN/A0.328 (0.076 to 0.581)0.0154
c. As Sultan Qaboos Hospital
(R2 = 30.04)
ConstantN/AN/AN/AN/A0.109 (0.092 to 0.126)<0.0001
Aminoglycosides3.54 (3.21–4.13)43.50 (3.44 to 5.46)Above0.046 (0.026 to 0.067)<0.0001
Fluoroquinolones2.98 (2.57–3.41)42.52 (2.00 to 2.72)Above0.026 (0.010 to 0.041)0.0022
d. Nizwa Hospital
(R2 = 24.50)
ConstantN/AN/AN/AN/A0.068 (0.055 to 0.082)<0.0001
Third-generation cephalosporins 9.05 (8.08–10.02)49.18 (9.15 to 12.52)Above0.014 (0.002 to 0.026)0.0246
Aminoglycosides1.27 (1.00–1.63)21.64 (1.32 to 1.70)Above0.079 (0.009 to 0.148)0.0339
e. Sur Hospital
(R2 = 42.9)
ConstantN/AN/AN/AN/A0.204 (0.179 to 0.228)<0.0001
Piperacillin-tazobactam2.29 (1.76–2.99)32.75 (1.83 to 3.77)Above0.070 (0.006 to 0.135)0.0387
Alcohol-based hand rub2.51 (1.87–3.08)22.57 (2.15 to 3.06)Above−0.079 (−0.118 to −0.041)0.0001
f. Ibra Hospital
(R2 = 9.2)
ConstantN/AN/AN/AN/A0.085 (0.066 to 0.104)<0.0001
Piperacillin-tazobactam1.30 (1.04–1.79)31.32 (1.12 to 2.98)Above0.016 (0.003 to 0.028)0.0219
* Defined Daily Dose (DDD) per 100 occupied bed-days (OBD).
Table 2. Translation of thresholds identified in non-linear models into population-specific antimicrobial stewardship policy suggestions.
Table 2. Translation of thresholds identified in non-linear models into population-specific antimicrobial stewardship policy suggestions.
HospitalsAntibioticPatient Treatments per Month
Maximum Suggested by Threshold (Lower and Upper Bound)Average Use in Last 12 Months of StudySuggested Reduction in Use (%)
StandardConservative
a. Royal HospitalThird-generation cephalosporins 139 (127–181)105Maintain below thresholdMaintain below threshold
b. Khawlah HospitalPiperacillin-tazobactam44 (35–57)5511 (20)20 (36)
Aminoglycoside12 (12–21)11Maintain below thresholdMaintain below threshold
c. As Sultan Qaboos HospitalAminoglycoside52 (51–84)49Maintain below thresholdMaintain below threshold
Fluoroquinolones38 (30–41)446 (14)14 (32)
d. Nizwa HospitalThird-generation cephalosporins 85 (84–115)74Maintain below thresholdMaintain below threshold
Aminoglycoside15 (12–16)9Maintain below thresholdMaintain below threshold
e. Sur HospitalPiperacillin-tazobactam13 (9–15)12Maintain below threshold3 (25)
f. Ibra HospitalPiperacillin-tazobactam8 (7–19)113 (27)4 (36)
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Al-Hashimy, Z.S.; Conway, B.R.; Al-Yaqoobi, M.; Khamis, F.; Al Mawali, G.Z.; Al Maashani, A.M.; Al Hadhrami, Y.S.; Al Alawi, S.S.; Al Mamari, M.S.; Lattyak, W.J.; et al. Identifying Targets for Antibiotic Use for the Management of Carbapenem-Resistant Acinetobacter baumannii (CRAb) in Hospitals—A Multi-Centre Nonlinear Time-Series Study. Antibiotics 2022, 11, 775. https://doi.org/10.3390/antibiotics11060775

AMA Style

Al-Hashimy ZS, Conway BR, Al-Yaqoobi M, Khamis F, Al Mawali GZ, Al Maashani AM, Al Hadhrami YS, Al Alawi SS, Al Mamari MS, Lattyak WJ, et al. Identifying Targets for Antibiotic Use for the Management of Carbapenem-Resistant Acinetobacter baumannii (CRAb) in Hospitals—A Multi-Centre Nonlinear Time-Series Study. Antibiotics. 2022; 11(6):775. https://doi.org/10.3390/antibiotics11060775

Chicago/Turabian Style

Al-Hashimy, Zainab Said, Barbara R. Conway, Mubarak Al-Yaqoobi, Faryal Khamis, Ghalib Zahran Al Mawali, Aisha Mahad Al Maashani, Yaqoob Said Al Hadhrami, Said Salim Al Alawi, Mohammed Said Al Mamari, William J. Lattyak, and et al. 2022. "Identifying Targets for Antibiotic Use for the Management of Carbapenem-Resistant Acinetobacter baumannii (CRAb) in Hospitals—A Multi-Centre Nonlinear Time-Series Study" Antibiotics 11, no. 6: 775. https://doi.org/10.3390/antibiotics11060775

APA Style

Al-Hashimy, Z. S., Conway, B. R., Al-Yaqoobi, M., Khamis, F., Al Mawali, G. Z., Al Maashani, A. M., Al Hadhrami, Y. S., Al Alawi, S. S., Al Mamari, M. S., Lattyak, W. J., Lattyak, E. A., Aldiab, M., Gould, I., López-Lozano, J. -M., & Aldeyab, M. A. (2022). Identifying Targets for Antibiotic Use for the Management of Carbapenem-Resistant Acinetobacter baumannii (CRAb) in Hospitals—A Multi-Centre Nonlinear Time-Series Study. Antibiotics, 11(6), 775. https://doi.org/10.3390/antibiotics11060775

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