Shortened Photoperiod Enhances Protein and Fat Energy Deposition in Growing Pigs
Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Animals and Treatments
2.2. Animal Feeding Management and Sample Collection
2.3. Test Indicators and Methods
- DNA extraction and quality assessment: Total genomic DNA was extracted using the E.Z.N.A.® Soil DNA Kit (Omega Bio-Tek, Norcross, GA, USA). DNA purity and concentration were assessed using a micro-spectrophotometer (NanoDrop™ 2000, Thermo Scientific Inc., Waltham, MA, USA; software version 1.6), and DNA integrity was verified by 1% agarose gel electrophoresis (5 V/cm, 20 min).
- PCR amplification: The V3–V4 hypervariable region of the bacterial 16S rRNA gene was amplified using primer pairs 338F (5′-ACTCCTACGGGAGGCAGCAG-3′) and 806R (5′-GGACTACHVGGGTWTCTAAT-3′) [12] on an ABI GeneAmp® 9700 PCR thermocycler (Applied Biosystems, Foster City, CA, USA; software version 3.12). PCR conditions were as follows: initial denaturation at 95 °C for 3 min, followed by 27–30 cycles (optimized per sample) of 95 °C for 30 s, 55 °C for 30 s, and 72 °C for 45 s, with a final extension at 72 °C for 10 min.
- Library preparation and sequencing: PCR products were purified using the AxyPrep DNA Gel Extraction Kit (Axygen Biosciences, Union City, CA, USA), quantified using a Quantus™ Fluorometer (Promega, Madison, WI, USA), and pooled in equimolar ratios according to sequencing depth requirements. Sequencing libraries were constructed using the NEXTFLEX® Rapid DNA-Seq Kit (Bioo Scientific, Austin, TX, USA). Paired-end sequencing was performed on the MiSeq PE300 platform (2 × 250 bp), generating a total of 1,684,913 raw reads.
- Quality filtering parameters: Raw reads were processed using the QIIME2 (v2023.2) pipeline with the DADA2 plugin (v1.20) according to the following criteria: (i) truncation of forward reads at 290 bp and reverse reads at 260 bp based on quality score profiles; (ii) filtering reads with ambiguous bases (N > 0) or expected error rate > 2 (maxEE = 2); (iii) paired-end merging with minimum overlap of 20 bp; and (iv) chimera removal using the consensus method. After quality control, a total of 1,459,506 high-quality sequences were obtained across 36 fecal samples, corresponding to 602,623,548 base pairs (mean ± SD: 40,542 ± 5537 sequences per sample; range: 33,240–59,319 sequences; average length: 413 bp; range: 210–525 bp).
- Rarefaction curves based on the Shannon diversity index were generated using the Majorbio Cloud platform (https://cloud.majorbio.com, accessed on 22 September 2022) to assess sequencing depth adequacy. All curves reached saturation at less than 5000 reads per sample, indicating that the observed bacterial diversity was adequately captured. Given that the actual sequencing depth averaged 40,542 ± 5537 reads per sample (minimum 33,240 reads), the sequencing coverage was sufficient for robust diversity analysis.
- Taxonomic assignment of ASV representative sequences was performed using the RDP Classifier (version 2.2) against the SILVA 138.1 SSU rRNA database (https://www.arb-silva.de, accessed on 28 September 2022) with a confidence threshold of 0.7 (70%). ASVs annotated as chloroplast or mitochondrial sequences were removed from the dataset. The final ASV table was normalized to relative abundance for downstream analysis.
2.4. Calculations
- (1)
- The volume of gas discharged in each period (V) is as follows:
- (2)
- Calculate animal oxygen consumption and carbon dioxide production according to the following formula:
- (3)
- Calculate the heat production according to the following formula [13]:
- (4)
- Dietary digestibility and metabolizable energy of pigs refer to the formula of Adeola [14]:
- (5)
- The formula of Noblet [15] is used for calculating the net energy of the pig diet:
2.5. Statistical Analysis
- (1)
- Within-group paired comparisons: Paired-samples t-tests were performed for N1 vs. P (prolonged group baseline vs. treatment) and N2 vs. S (shortened group baseline vs. treatment) to assess treatment effects relative to baseline.
- (2)
- Between-group independent comparisons: Independent-samples t-tests were used for P vs. S (treatment comparison).
3. Results
3.1. Effects of Different Photoperiods on Energy Distribution and Fiber Digestibility of Growing Pigs
3.2. Variation in Heat Production of Growing Pigs with Prolonged and Shortened Photoperiod
3.3. Effects of Different Photoperiods on Plasma Biochemical Indexes of Growing Pigs
3.4. Effects of Different Photoperiods on Rectal Microflora of Growing Pigs
3.4.1. Composition of Microorganisms in Feces of Growing Pigs at the Phylum Level
3.4.2. Alpha Diversity Analysis on the Feces Microbes of Growing Pigs in Different Photoperiod Group
3.4.3. PCoA Analysis on the Feces Microbes of Growing Pigs in Different Photoperiod Group
3.4.4. Differential Microorganisms in Growing Pig Feces in Different Groups
3.5. Effects of Different Photoperiods on Volatile Fatty Acids in Growing Pig Manure
3.6. Correlation Analysis Between Microorganisms and Volatile Fatty Acids, Between Volatile Fatty Acids and Plasma Biochemical Indicators, and Between Plasma Biochemical Indicators and Energy Distribution
3.6.1. Correlation Analysis Between Microorganisms and Volatile Fatty Acids (Figure 4a)

3.6.2. Correlation Analysis Between Volatile Fatty Acids and Plasma Biochemical Indicators (Figure 4b)
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| ADF | Acid detergent fiber |
| ApoA-IV | Apolipoprotein A-IV |
| ATTD | Apparent total tract digestibility |
| BUN | Blood urea nitrogen |
| COR | Cortisol |
| CP | Crude protein |
| DE | Digestible energy |
| DLW | Doubly labeled water |
| DM | Dry matter |
| FHP | Fasting heat production |
| GIPs | Gastric inhibitory peptides |
| GLP-1 | Glucagon-like peptide-1 |
| Glu | Glucose |
| HDL | High-density lipoprotein |
| HI | Heat increment |
| IC | Ion chromatography |
| LDL | Low-density lipoprotein |
| LEP | Leptin |
| ME | Metabolizable energy |
| MT | Melatonin |
| NDF | Neutral detergent fiber |
| NE | Net energy |
| NEm | Net energy for maintenance |
| NEp | Net energy for production |
| PYY | Peptide YY |
| RE | Retained energy |
| REf | Retained energy as fat |
| REp | Retained energy as protein |
| RQ | Respiratory quotient |
| SCN | Suprachiasmatic nucleus |
| SCFAs | Short-chain fatty acids |
| SID Lys | Standardized ileal digestible lysine |
| SID Met | Standardized ileal digestible methionine |
| SID Thr | Standardized ileal digestible threonine |
| SID Trp | Standardized ileal digestible tryptophan |
| TC | Total cholesterol |
| TG | Triglyceride |
| THP | Total heat production |
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| Items | Basal Diet |
|---|---|
| Ingredients | |
| Corn | 63.00 |
| Soybean meal | 20.25 |
| Wheat bran | 12.00 |
| Soybean oil | 1.07 |
| Premix 1 | 1.00 |
| Lysine 2 | 0.35 |
| Methionine | 0.08 |
| Threonine | 0.16 |
| Tryptophan | 0.04 |
| Limestone | 0.80 |
| Calcium hydrophosphate | 0.90 |
| Salt | 0.35 |
| Total | 100.00 |
| Calculated nutrient levels | |
| Net energy, MJ/kg | 10.63 |
| Crude protein | 16.51 |
| Calcium | 0.66 |
| Phosphorus | 0.29 |
| SID Lys 3 | 0.98 |
| SID Met | 0.32 |
| SID Thr | 0.64 |
| SID Trp | 0.18 |
| Measured value of nutritional level | |
| Gross energy, MJ/kg | 16.19 |
| Net energy, MJ/kg | 12.12 |
| Crude protein, % | 17.98 |
| Neutral detergent fiber, % | 15.68 |
| Acid detergent fiber, % | 5.43 |
| p-Value | |||||||
|---|---|---|---|---|---|---|---|
| Items | N1 | N2 | P | S | N1 vs. P | N2 vs. S | P vs. S |
| Energy balance, MJ/d | |||||||
| Feed intake | 2.01 ± 0.22 | 1.87 ± 0.27 | 2.36 ± 0.17 | 2.32 ± 0.16 | <0.001 | <0.001 | 0.424 |
| Energy intake | 32.59 ± 3.52 | 30.23 ± 4.29 | 38.24 ± 2.75 | 37.62 ± 2.53 | <0.001 | <0.001 | 0.655 |
| Feces energy | 4.42 ± 1.21 | 4.76 ± 1.55 | 5.32 ± 0.97 | 5.57 ± 1.02 | 0.004 | 0.009 | 0.458 |
| Urine energy | 0.55 ± 0.14 | 0.62 ± 0.12 | 0.79 ± 0.31 | 0.60 ± 0.28 | 0.170 | 0.904 | 0.283 |
| Methane energy | 0.07 ± 0.04 | 0.07 ± 0.05 | 0.07 ± 0.05 | 0.08 ± 0.04 | 0.370 | 0.197 | 0.737 |
| ME intake | 27.62 ± 2.40 | 24.86 ± 2.01 | 32.12 ± 2.16 | 31.45 ± 1.93 | 0.043 | 0.004 | 0.586 |
| NE intake | 24.82 ± 2.69 | 21.73 ± 4.10 | 28.95 ± 2.51 | 27.79 ± 2.25 | <0.001 | <0.001 | 0.328 |
| THP | 6.87 ± 0.70 | 8.86 ± 0.92 | 6.74 ± 0.75 | 8.87 ± 0.75 | 0.037 | 0.939 | <0.001 |
| RQ | 1.13 ± 0.05 | 1.14 ± 0.03 | 1.14 ± 0.07 | 1.17 ± 0.06 | 0.778 | 0.211 | 0.459 |
| Energy efficiency, % | 89.99 ± 2.83 | 86.93 ± 3.34 | 90.08 ± 2.94 | 88.47 ± 5.28 | 0.957 | 0.599 | 0.526 |
| Energy deposition/metabolic weight, MJ∙ kg BW-0.6 | |||||||
| NE deposition | 1.78 ± 0.19 | 1.42 ± 0.20 | 2.05 ± 0.32 | 1.92 ± 0.30 | 0.068 | 0.016 | 0.458 |
| REp | 0.57 ± 0.06 | 0.56 ± 0.06 | 0.61 ± 0.13 | 0.68 ± 0.09 | 0.400 | 0.006 | 0.312 |
| REf | 1.21 ± 0.14 | 0.87 ± 0.22 | 1.44 ± 0.21 | 1.23 ± 0.22 | 0.052 | 0.036 | 0.127 |
| ATTD, % | |||||||
| Dry matter | 86.58 ± 3.13 | 84.49 ± 4.74 | 86.25 ± 2.16 | 85.38 ± 2.41 | 0.645 | 0.326 | 0.193 |
| NDF | 63.32 ± 9.74 | 57.31 ±12.98 | 60.46 ± 8.19 | 56.56 ± 6.72 | 0.272 | 0.795 | 0.078 |
| ADF | 59.51 ±12.33 | 53.22 ±14.91 | 57.05 ± 8.85 | 53.18 ± 7.93 | 0.433 | 0.990 | 0.117 |
| Crude protein | 88.00 ± 2.99 | 85.23 ± 5.00 | 87.90 ± 2.24 | 86.75 ± 1.98 | 0.880 | 0.146 | 0.066 |
| Energy | 86.47 ± 3.20 | 84.20 ± 4.94 | 86.08 ± 2.32 | 85.20 ± 2.54 | 0.602 | 0.288 | 0.218 |
| p-Value | |||||||
|---|---|---|---|---|---|---|---|
| Items | N1 | N2 | P | S | N1 vs. P | N2 vs. S | P vs. S |
| Routine blood test | |||||||
| GLU, mmol/L | 5.55 ± 0.95 | 5.01 ± 0.62 | 5.43 ± 0.35 | 5.74 ± 0.97 | 0.813 | 0.127 | 0.479 |
| TC, mmol/L | 2.15 ± 0.16 | 2.14 ± 0.32 | 2.02 ± 0.47 | 2.03 ± 0.23 | 0.592 | 0.159 | 0.951 |
| TG, mmol/L | 0.24 ± 0.13 | 0.30 ± 0.12 | 0.33 ± 0.27 | 0.21 ± 0.07 | 0.482 | 0.211 | 0.313 |
| HDL, mmol/L | 0.82 ± 0.11 | 0.82 ± 0.15 | 0.84 ± 0.22 | 0.90 ± 0.07 | 0.845 | 0.110 | 0.541 |
| LDL, mmol/L | 1.44 ± 0.13 | 1.57 ± 0.22 | 1.35 ± 0.28 | 1.43 ± 0.13 | 0.518 | 0.033 | 0.533 |
| ApoA-Ⅳ, ug/mL | 19.37 ± 1.27 | 19.92 ± 1.41 | 18.85 ± 0.87 | 20.12 ± 0.94 | 0.132 | 0.778 | 0.036 |
| BUN, mmol/L | 3.22 ± 0.47 | 3.23 ± 0.68 | 2.92 ± 0.53 | 3.72 ± 0.87 | 0.283 | 0.299 | 0.083 |
| Hormone | |||||||
| GLP-1, pmol/L | 1.39 ± 0.12 | 1.57 ± 0.18 | 1.47 ± 0.08 | 1.52 ± 0.07 | 0.054 | 0.576 | 0.250 |
| Ghrelin, pg/mL | 64.57 ± 4.22 | 66.42 ± 4.70 | 62.84 ± 2.90 | 67.07 ± 3.13 | 0.132 | 0.778 | 0.036 |
| PYY, pmol/mL | 2.20 ± 0.10 | 2.29 ± 0.12 | 2.20 ± 0.16 | 2.30 ± 0.16 | 0.921 | 0.844 | 0.293 |
| COR, ng/mL | 52.98 ± 26.55 | 36.46 ± 13.84 | 62.34 ± 26.33 | 77.47 ± 55.79 | 0.253 | 0.192 | 0.561 |
| GIP, pg/mL | 77.69 ± 5.52 | 80.38 ± 4.93 | 79.27 ± 6.91 | 82.90 ± 4.11 | 0.608 | 0.010 | 0.296 |
| LEP, ng/mL | 1.88 ± 0.17 | 1.89 ± 0.13 | 1.82 ± 0.10 | 1.88 ± 0.07 | 0.226 | 0.661 | 0.323 |
| MT, pg/mL | 283.12 ± 20.46 | 294.04 ± 21.39 | 274.44 ± 11.96 | 294.50 ± 26.84 | 0.269 | 0.976 | 0.125 |
| p-Value | |||||||
|---|---|---|---|---|---|---|---|
| Items | N1 | N2 | P | S | N1 vs. P | N2 vs. S | P vs. S |
| Acetic acid | 5.05 ± 0.71 | 4.90 ± 1.14 | 5.36 ± 1.27 | 4.04 ± 0.87 | 0.642 | 0.048 | 0.062 |
| Propionic acid | 2.85 ± 1.12 | 2.52 ± 0.95 | 3.06 ± 0.79 | 2.14 ± 0.47 | 0.628 | 0.330 | 0.035 |
| Isobutyric acid | 0.36 ± 0.06 | 0.36 ± 0.18 | 0.39 ± 0.12 | 0.32 ± 0.11 | 0.619 | 0.650 | 0.318 |
| Butyric acid | 1.48 ± 0.38 | 1.71 ± 0.86 | 1.54 ± 0.39 | 1.31 ± 0.45 | 0.844 | 0.243 | 0.364 |
| Isovaleric acid | 0.61 ± 0.16 | 0.61 ± 0.16 | 0.69 ± 0.25 | 0.69 ± 0.25 | 0.609 | 0.609 | 0.189 |
| Valeric acid | 0.35 ± 0.11 | 0.40 ± 0.19 | 0.39 ± 0.12 | 0.34 ± 0.10 | 0.688 | 0.449 | 0.478 |
| Total SCFAs | 10.69 ± 2.19 | 10.47 ± 3.26 | 11.43 ± 2.41 | 8.68 ± 1.90 | 0.655 | 0.138 | 0.053 |
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Cao, H.; Zeng, Z.; Shi, H.; Wang, L.; Li, Y.; Hu, Q.; Wang, L.; Zhang, S. Shortened Photoperiod Enhances Protein and Fat Energy Deposition in Growing Pigs. Animals 2026, 16, 688. https://doi.org/10.3390/ani16040688
Cao H, Zeng Z, Shi H, Wang L, Li Y, Hu Q, Wang L, Zhang S. Shortened Photoperiod Enhances Protein and Fat Energy Deposition in Growing Pigs. Animals. 2026; 16(4):688. https://doi.org/10.3390/ani16040688
Chicago/Turabian StyleCao, Hongrui, Zhengcheng Zeng, Huangwei Shi, Li Wang, Yingying Li, Qile Hu, Lu Wang, and Shuai Zhang. 2026. "Shortened Photoperiod Enhances Protein and Fat Energy Deposition in Growing Pigs" Animals 16, no. 4: 688. https://doi.org/10.3390/ani16040688
APA StyleCao, H., Zeng, Z., Shi, H., Wang, L., Li, Y., Hu, Q., Wang, L., & Zhang, S. (2026). Shortened Photoperiod Enhances Protein and Fat Energy Deposition in Growing Pigs. Animals, 16(4), 688. https://doi.org/10.3390/ani16040688

