Identification of Selection Signatures and Candidate Genes Related to Environmental Adaptation and Economic Traits in Tibetan Pigs
Abstract
:Simple Summary
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethics Approval
2.2. Animals and Sample Preparation
2.3. Determination of Phenotypic Characteristics
2.4. DNA Extraction
2.5. Genotyping and Quality Control
2.6. Population Structure and Phylogenetic Analysis
2.7. Linkage Disequilibrium Analysis
2.8. Detection of Selection Signatures and Gene Annotation
2.9. Functional Enrichment Analysis
3. Results and Discussion
3.1. Detection of SNPs between Highland and Lowland Tibetan Pigs
3.2. Population Structure Analysis
3.3. Linkage Disequilibrium Analysis
3.4. Selection Signature Detection and Identification of Candidate Genes
4. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
References
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Liu, P.; Liang, Y.; Li, L.; Lv, X.; He, Z.; Gu, Y. Identification of Selection Signatures and Candidate Genes Related to Environmental Adaptation and Economic Traits in Tibetan Pigs. Animals 2024, 14, 654. https://doi.org/10.3390/ani14040654
Liu P, Liang Y, Li L, Lv X, He Z, Gu Y. Identification of Selection Signatures and Candidate Genes Related to Environmental Adaptation and Economic Traits in Tibetan Pigs. Animals. 2024; 14(4):654. https://doi.org/10.3390/ani14040654
Chicago/Turabian StyleLiu, Pengliang, Yan Liang, Li Li, Xuebin Lv, Zhiping He, and Yiren Gu. 2024. "Identification of Selection Signatures and Candidate Genes Related to Environmental Adaptation and Economic Traits in Tibetan Pigs" Animals 14, no. 4: 654. https://doi.org/10.3390/ani14040654