Molecular Characterization and Expression Profiles of the Ovine LHβ Gene and Its Association with Litter Size in Chinese Indigenous Small-Tailed Han Sheep
by
, and
Weimin Wang
1, 
Yongfu La
1,
Fadi Li
1,2,
Shijia Liu
1,
Xiangyu Pan
1,
Chong Li
1 and
Xiaoxue Zhang
1,* 1
College of Animal Science and Technology, Gansu Agricultural University, Lanzhou 730070, China
2
Engineering Laboratory of Sheep Breeding and Reproduction Biotechnology in Gansu Province, Minqin 730020, China
*
Author to whom correspondence should be addressed.
Animals 2020, 10(3), 460; https://doi.org/10.3390/ani10030460
Submission received: 4 February 2020
/
Revised: 28 February 2020
/
Accepted: 6 March 2020
/
Published: 10 March 2020
(This article belongs to the Section Animal Genetics and Genomics)
Abstract
:Simple Summary
Litter size is one of the most important reproductive traits in sheep, and the luteinizing hormone beta polypeptide (LHβ) plays an important role in mammalian follicular development. In this study, we cloned and analyzed the cDNA sequence of the ovine LHβ gene, and the expression patterns of LHβ were determined. Furthermore, the synonymous mutation g.727C > T detected in the LHβ gene was confirmed to be significantly associated with litter size (p < 0.01). These findings support LHβ g.727C > T as a genetic marker for litter size in sheep.
Abstract
The luteinizing hormone beta polypeptide (LHβ) is a glycoprotein hormone secreted by basophilic granular cells of the adenohypophysis, and plays an important role in mammalian follicular development. In this study, we cloned and analyzed the cDNA sequence of the ovine LHβ gene. RT-qPCR analysis showed that ovine LHβ was widely expressed in tissues, with significantly higher expression in the hypophysis than that in other tissues (heart, liver, spleen, lung, kidney, rumen, duodenum, muscle, fat, hypothalamus, and sex glands) (p < 0.01). Hypophyseal expression of LHβ mRNA in lamb increased with age and reached a peak at 70 days, although a slight decrease was observed at 84 days of age. In addition, the synonymous mutation g.727C > T detected in the LHβ gene was confirmed to be significantly associated with the litter size (p < 0.01). Ewes carrying the TT genotype produced more lambs than those carrying the TC and CC genotypes (0.42 and 0.39 per delivery, respectively; p < 0.05). Our results confirm the association of ovine LHβ with litter size in Small-Tailed Han Sheep and implicate LHβ as a candidate for improving reproductive traits in agricultural sheep breeding programs.
1. Introduction
The luteinizing hormone (LH) is a glycoprotein hormone secreted by basophilic granular cells of the adenohypophysis [1]. This gonadotropin plays a central role in vertebrate reproductive function by conveying integrated central information from the hypothalamic–pituitary complex to the gonads in both males and females [2]. LH is a heterodimer, comprising a common α subunit (LHα) and a hormone-specific β subunit (LHβ), each encoded by a single gene [3]. The rat [4], human [5], bovine [6], horse [7], chicken [8], and sheep [9,10] forms of the LHβ gene have been cloned. Sheep LHβ is located on chromosome 14 and comprises three exons separated by two intronic regions [11].
LHβ is an important candidate involved in reproduction traits and variants may contribute to some pathologies of pituitary–gonadal function [12]. Nilsson et al. found that the high frequency of the LH variants worldwide represents an important confounding factor that leads to disproportionately low LHβ levels detected in some immunometric assays [12]. The LHβ c.118_120del mutation results in hypogonadism due to intracellular sequestration of the hormone [13].
The Small-Tailed Han Sheep was originally raised in Shandong Province, China [14]. It quickly gained the attention of Chinese sheep breeders and is commonly used as the female parent in modern hybridization systems because of its reputation for high fertility [15]. The objectives of the present study were: (1) to clone and characterize the cDNA sequence of the ovine LHβ gene; (2) to analyze the expression profiles of ovine LHβ m RNA in different tissues in rams and ewes; (3) to investigate the association of polymorphisms in the ovine LHβ gene with litter size in Small-Tailed Han Sheep. This study could provide a valuable molecular marker for marker-assisted selection (MAS) in Small-Tailed Han Sheep breeding programs.
2. Materials and Methods
2.1. Ethics Statement
All experiments in this study were carried out in accordance with the approved guidelines from the Regulation of the Standing Committee of Gansu People’s Congress under Permission No. 2019-00014. All experimental protocols and the collection of samples were approved by the Ethics Committee of Gansu Agriculture University (China) under Permission No. 2002-58.
2.2. cDNA Cloning and Sequence Analysis
The sheep LHβ cDNA sequence (GenBank Accession no. NM_001009380.1) was employed as a template. Primer pairs were designed based on the whole genome and coding sequence region of the LHβ gene (Table 1). The functional domains of the deduced proteins were analyzed with the Simple Modular Architecture Research Tool (SMART) (http://smart.embl-heidelberg.de/) [16]. The homologies of LHβ coding products in different species were analyzed by ClustalW2 online (http://www.ebi.ac.uk/Tools/msa/clustalw2/).
The RNA used in this process was extracted from the tissues of an adult female Chinese indigenous Small-Tailed Han Sheep (Gansu Province, China) with TransZol (TransGen Biotech, Beijing, China). RT-PCR (reverse transcription PCR) was performed by using Taq polymerase (TransGen Biotech, Beijing, China) and TransScript One-Step gDNA Removal and cDNA Synthesis SuperMix (TransGen Biotech, Beijing, China). Following separation by agarose gel electrophoresis, the predominant PCR product was purified and subsequently cloned into the pEGM-T-Easy vector (Promega, WI, USA) prior to sequencing.
2.3. Analysis of Spatio-Temporal Expression of LHβ in Sheep
Sheep LHβ mRNA levels were detected in different tissues (heart, liver, spleen, lung, kidney, rumen, duodenum, muscle, fat, hypothalamus, hypophysis, sex glands (testicle and ovary)) of six Small-Tailed Han Sheep (three adult rams and three adult ewes). The sheep LHβ mRNA levels in the hypophysis were quantified at different ages by quantitative real-time PCR (qPCR). Forty-two lambs were slaughtered for hypophysis tissue sampling at 0 d, 14 d, 28 d, 42 d, 56 d, 70 d, and 84 d (six lambs were slaughtered at each time-point). The total RNA of each tissue was extracted and subsequently reverse-transcribed into cDNA, as described previously. A 60 bp fragment of sheep LHβ was amplified by PCR using specific primers (LHβ-expression-S, LHβ-expression-A for LHβ, Table 1) and the following thermocycling conditions: 3 min at 94 °C, followed by 30 s at 94 °C, 30 s at 65.1 °C, and 30 s at 72 °C (34 cycles), and a final extension incubation at 5 min at 72 °C. GAPDH was used as an internal control gene. qPCR was performed on the BIO-RAD CFX96 Touch Real-time PCR Detection System (BIO-RAD, USA) using SYBR Green Real-time PCR Master Mix (TOYOBOCO, Osaka, Japan) as the readout. Data were analyzed using the 2−△△CT method [17].
2.4. SNP Identification and Association Analysis
A total of 869 ewes (aged 12–30 months) were obtained from Minqin Zhongtian Sheep Ltd. (Wuwei, China). All the sheep were produced using the artificial insemination system and raised under the same management conditions. The rams that were mated with these ewes had been sold, and blood samples were not collected for genotyping. All ewes lambed between July and August 2015. The litter size data for ewes was recorded for the first or second parity. The DNA used in this process was extracted from the blood of 869 Small-Tailed Han Sheep [15]. The SNP of the ovine LHβ gene was identified by sequencing the PCR products amplified using the eight mixed DNA samples obtained from Small-Tailed Han Sheep blood samples. Specific primers for use in the polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method were designed based on the assembled DNA sequence of the sheep LHβ gene (Table 1). The PCR for genotyping was performed in a volume of 25 μL, containing 10× PCR buffer, 0.35 μM primer, 87.5 μM dNTPs, 50 ng genomic DNA, and 1.25 U Taq DNA Polymerase (TransGen Biotech) using the following thermocycling conditions: 5 min at 94 °C, followed by 30 s at 94 °C, 30 s at 60 °C, 30 s at 72 °C (35 cycles), and a final extension incubation for 5 min at 72 °C. Samples of the PCR product (4 µL) were digested with 2 U BsrB I for 30 min at 37 °C and then separated by agarose gel (3%) electrophoresis stained with GelRed.
The PROC GLM procedure in SAS software package was employed to analyze the association between genotypes and trait [18] using a linear model with the fixed effects:
where Yij represents the i traits observation value, μ represents the mean; Gi represents the effect of the ith genotypes, Pj represents the effect of the jth parity (j = 1, 2), and εij represents the residual corresponding to the traits observation value with variance. Gi and Pj were fixed effects. p < 0.05 was considered to indicate statistical significance.
Yij = μ + Gi + Pj + εij
3. Results
3.1. Sequence Analysis of Ovine LHβ
A 1018 bp fragment of the ovine LHβ gene was cloned. The ovine LHβ gene contained a putative open reading frame (ORF) of 426 bp, encoding a protein consisting of 141 amino acid residues. The GHβ domain was predicted at the N-terminal of the LHβ protein sequence. Multiple amino acid sequence alignments of cattle, buffalo, sheep, dog, pig, rat, horse, human, chimpanzee, and zebrafish LHβ proteins revealed a high degree of conservation among LHβ proteins in different species (Figure 1).
3.2. Analysis of Spatio-Temporal Expression of LHβ in Sheep
The general tissue distribution of the LHβ gene in rams and ewes was investigated by real-time PCR (Figure 2 and Figure 3, respectively). LHβ expression was found to be ubiquitous and was detected in all 13 tissues tested (heart, liver, spleen, lung, kidney, rumen, duodenum, muscle, fat, hypothalamus, hypophysis, testis (Figure 2), and ovary tissues (Figure 3), and the LHβ gene displayed significantly higher expression in hypophysis than in other tissues (p < 0.01).
The LHβ mRNA expression levels in ram hypophysis were quantified by real-time PCR at seven different time-points (0 d, 14 d, 28 d, 42 d, 56 d, 70 d, and 84 d; Figure 4). The expression level of LHβ mRNA in ram hypophysis increased with age and reached a peak at 70 d followed by a slight decrease at 84 d.
3.3. SNP Scanning of Ovine LHβ Gene
Sequencing of 1018 bp PCR product was amplified from a DNA pool obtained from eight Small-Tailed Han Sheep using the primer pair LHβ-SNP-S and LHβ-SNP-A (Table 1, Figure 5) revealed a synonymous mutation, g.727C > T in the sheep LHβ gene (Figure 6). This mutation was confirmed by PCR-RFLP analysis using the BsrB I restriction enzyme, which generated a 938 bp band representing the allele C, and the bands of 713 bp and 225 bp representing the allele T (Figure 7).
3.4. Association Analysis of Ovine LHβ Gene with the Litter Size
The effect of SNP in the ovine LHβ gene on the litter size in the Small-Tailed Han Sheep was studied. Association analysis results indicated that the g.727C > T polymorphism of the ovine LHβ gene was significantly associated with the litter size (p < 0.05) (Table 2). Moreover, the litter sizes produced by ewes carrying the TT genotype were increased compared with those produced by the ewes carrying CC and TC genotypes (0.39 and 0.42 per delivery, respectively).
4. Discussion
In this study, the GHβ domain was predicted to be formed by amino acid residues 25–131 of the LHβ protein by the SMART programme. Glycoprotein hormones (or gonadotropins) are a family of proteins that include the follicle-stimulating hormone (FSH), LH, thyrotropin (TSH), and chorionic gonadotropin (CG), as well as at least two forms of fish gonadotropin [19]. All these hormones consist of two glycosylated chains (alpha and beta) [20]. In mammalian gonadotropins, the alpha chain is identical in the four types of hormones, while the beta chains, despite being homologous, are different [21]. Multiple amino acid sequence alignments of sheep, cattle, human, mouse, pig, zebrafish, dogs, horse, buffalo, and chimpanzee LHβ proteins conducted in this study showed a high degree of conservation among the LHβ proteins in different species (Figure 1). Furthermore, this amino acid sequence alignment showed that the GHβ domain is highly conservative among the predicted sheep LHβ protein and other species, indicating a high level of functional similarity among the GHβ domains in different species. These findings verify that the sheep LHβ gene encodes a glycoprotein hormone.
The tissue expression profiles obtained by RT-qPCR analysis revealed the broad expression pattern of the LHβ gene in Small-Tailed Han Sheep, with expression detected in all 13 of the tissues tested (heart, liver, spleen, lung, kidney, rumen, duodenum, muscle, fat, hypothalamus, hypophysis, and sexual glands (testicle and ovary). The LHβ gene was expressed at very high levels in the hypophysis (p < 0.01), which is consistent with the secretion of LH by basophilic granular cells in the adenohypophysis [1]. It should be noted that the expression of the LHβ gene in the hypophysis of rams is significantly higher than that in ewes, suggesting that the effect of the LHβ gene on hypophysis in rams may be greater than that in ewes. However, further experiments are needed to verify this hypothesis. The potential function of the ovine LHβ gene during the development of the ovine hypophysis was investigated by RT-qPCR analysis of LHβ mRNA expression in the lambs aged 0–84 days. Hypophyseal expression of LHβ mRNA in rams increased with age, reaching a peak at 70 d. Pulsatile secretion of LH has been reported to play a key role in the onset of puberty in mammals, including sheep [22,23]. Small-Tailed Han Sheep is a breed recognized for its high fecundity and precocity, with puberty occurring between 2 and 4 months of age. Therefore, we concluded that the male Small-Tailed Han lamb reproductive apparatus matures gradually with age, and that puberty occurs at around 70 days of age. Furthermore, our analysis indicates a relationship between the expression of LHβ mRNA and puberty in lambs, although further study is needed and the mechanisms remain unclear.
Previous studies related to LHβ gene polymorphisms have focused mainly on human reproductive disorders [24,25]. Basavarajappa et al. identified seven different variants of the LHβ gene in the Indian river buffalo (Bubalus bubalis) based on a polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP) analysis [26]. Li et al. detected a g.401G > A/C mutation in the caprine LHβ gene that was significantly associated with litter size (p < 0.05) in Nanjiang-Huang goats [27]. Additionally, Liu et al. also found six synonymous mutations in the 5ʹ UTR and exon 2 of the ovine LHβ gene, two of which were significantly associated with litter size (p < 0.01) in Hu sheep [28]. The g.727C > T mutation of the LHβ gene identified in this study is also a synonymous mutation. Nonetheless, recent studies suggest synonymous mutations can change protein levels or protein conformation by altering regulatory splice sites, mRNA stability, miRNA binding sites, or translation efficiency [29]. To further investigate the effect of this synonymous mutation on sheep phenotype, we analyzed the potential association between genotype and litter size. The results indicated that the novel SNP g.727C > T mutation in the ovine LHβ gene was significantly associated to the trait of litter size. The phenotype values of the litter size in the animals with the TT genotype were evidently higher than those with the TC and CC genotypes. Furthermore, the litter sizes produced by ewes carrying the TT genotype were increased compared with those produced by the ewes carrying TC and CC genotypes (0.42 and 0.39 per delivery, respectively). Since the luteinizing hormone is the coding product of the LHβ gene and it can promote ovulation, we speculate that the mutation may affect the ovulation number of ewes by regulating the secretion level of the luteinizing hormone. Nonetheless, further studies are needed to verify the physiological functions of the LHβ gene in high prolificacy at the cell and protein levels.
5. Conclusions
Our results indicate the potential of the ovine LHβ gene as a candidate for improving litter size in the agricultural sheep breeding program. Further studies on the association between the LHβ gene and reproductive performance are warranted in larger populations of different breeds and under different environmental conditions to confirm these results.
Author Contributions
W.W. and X.Z. conceived and designed the experiments. W.W., F.L., Y.L., S.L., X.P., C.L., and X.Z. performed the experiments. W.W., Y.L., X.P., S.L., and X.Z. prepared the samples. W.W. and X.Z. analyzed the data. W.W., wrote the manuscript. W.W. and X.Z. revised the paper. All authors read and approved the final manuscript.
Funding
This work was supported by the Discipline construction fund project of Gansu Agricultural University (Grant No. GAU-XKJS-2018-023).
Conflicts of Interest
The authors declare no conflict of interest. The funders had no role in the design of the study; in the collection, analyses, or interpretation of data; in the writing of the manuscript, or in the decision to publish the results.
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Figure 1.
Multiple amino acid sequence alignments of Bos taurus (NM_173930.1), Bubalus bubalis (NM_001290957.1), Ovis aries (NM_001009380.1), Canis lupus familiaris (NM_001197033.1), Sus scrofa (XM_005664701.1), Mus musculus (NM_008497.2), Equus caballus (NM_001197093.1), Homo sapiens (NM_000894.2), Pan troglodytes (NM_001071803.1), and Danio rerio (NM_205622.2). Glycoprotein hormone beta chain (GHβ) homologues are indicated by red underlining. The same sequence is indicated by an asterisk. The conservative and semi-conservative mutations are represented by “:” and “.”, respectively.
Figure 1.
Multiple amino acid sequence alignments of Bos taurus (NM_173930.1), Bubalus bubalis (NM_001290957.1), Ovis aries (NM_001009380.1), Canis lupus familiaris (NM_001197033.1), Sus scrofa (XM_005664701.1), Mus musculus (NM_008497.2), Equus caballus (NM_001197093.1), Homo sapiens (NM_000894.2), Pan troglodytes (NM_001071803.1), and Danio rerio (NM_205622.2). Glycoprotein hormone beta chain (GHβ) homologues are indicated by red underlining. The same sequence is indicated by an asterisk. The conservative and semi-conservative mutations are represented by “:” and “.”, respectively.
Figure 2.
The LHβ mRNA expression profile of various tissues in Hu rams. Note: Different capital letters indicate an extremely significant difference (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 2.
The LHβ mRNA expression profile of various tissues in Hu rams. Note: Different capital letters indicate an extremely significant difference (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 3.
The LHβ mRNA expression profile of various tissues in Hu ewes. Note: Different capital letters indicate an extremely significant difference (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 3.
The LHβ mRNA expression profile of various tissues in Hu ewes. Note: Different capital letters indicate an extremely significant difference (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 4.
Developmental changes in hypophyseal LHβ mRNA expression in lambs aged 0–84 days. Note: Different capital letters indicate an extremely significant differences (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 4.
Developmental changes in hypophyseal LHβ mRNA expression in lambs aged 0–84 days. Note: Different capital letters indicate an extremely significant differences (p < 0.01), and different lowercase letters indicate a significant difference (p < 0.05).
Figure 5.
Polymerase chain reaction (PCR) amplification of the ovine LHβ gene. 1~6 Lane: 1018 bp fragment of ovine LHβ gene; M: DNA Marker (DL2000).
Figure 5.
Polymerase chain reaction (PCR) amplification of the ovine LHβ gene. 1~6 Lane: 1018 bp fragment of ovine LHβ gene; M: DNA Marker (DL2000).
Figure 6.
Sequencing results of the ovine LHβ gene. The red arrow indicates the mutant peaks.
Figure 7.
PCR-Restriction fragment length polymorphism (PCR-RFLP) results of different genotypes of the PCR products digested by enzyme BsrB I g.727C > T of ovine LHβ polymorphisms. The genotypes are marked at the top of the lanes. M: DNA Marker (DL2000).
Figure 7.
PCR-Restriction fragment length polymorphism (PCR-RFLP) results of different genotypes of the PCR products digested by enzyme BsrB I g.727C > T of ovine LHβ polymorphisms. The genotypes are marked at the top of the lanes. M: DNA Marker (DL2000).
Table 1.
Primer pairs designed for the sheep LHβ and GAPDH genes.
| Primer Name | GenBank Accession Number | Primer Sequences (5ʹ–3ʹ) | Annealing Temperature (°C) | Product Size (bp) |
|---|---|---|---|---|
| LHβ–SNP-S | NC_019471.1 | TGCTCCAGGTAAGTCTGTAGGG | 65.7 | 1018 bp |
| LHβ–SNP-A | AGCGTCTGCTGGCTTTGG | |||
| LHβ-expression-S | NM_001009380.1 | ACCCTGGCGGCTGAGAA | 60 | 60 bp |
| LHβ-expression-A | GCAGATGCTGGTGGTGAAAG | |||
| GAPDH-S | NM_001190390.1 | ACTTTGGCATCGTGGAGG | 58 | 379 bp |
| GAPDH-A | GAAGAGTGAGTGTCGCTGTTG |
Table 2.
Association between genotypes carrying the g.727C > T polymorphism of the ovine LHβ gene and litter size.
Table 2.
Association between genotypes carrying the g.727C > T polymorphism of the ovine LHβ gene and litter size.
| Genotypes | Number of Animals | Litter Size |
|---|---|---|
| CC | 637 | 1.78 ± 0.02 b |
| TC | 168 | 1.75 ± 0.05 b |
| TT | 84 | 2.17 ± 0.08 a |
Phenotype values are presented as mean ± standard error. Phenotype values in the same column with different superscript lowercase indicate extremely significant differences (p < 0.05).
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Wang, W.; La, Y.; Li, F.; Liu, S.; Pan, X.; Li, C.; Zhang, X. Molecular Characterization and Expression Profiles of the Ovine LHβ Gene and Its Association with Litter Size in Chinese Indigenous Small-Tailed Han Sheep. Animals 2020, 10, 460. https://doi.org/10.3390/ani10030460
AMA Style
Wang W, La Y, Li F, Liu S, Pan X, Li C, Zhang X. Molecular Characterization and Expression Profiles of the Ovine LHβ Gene and Its Association with Litter Size in Chinese Indigenous Small-Tailed Han Sheep. Animals. 2020; 10(3):460. https://doi.org/10.3390/ani10030460
Chicago/Turabian StyleWang, Weimin, Yongfu La, Fadi Li, Shijia Liu, Xiangyu Pan, Chong Li, and Xiaoxue Zhang. 2020. "Molecular Characterization and Expression Profiles of the Ovine LHβ Gene and Its Association with Litter Size in Chinese Indigenous Small-Tailed Han Sheep" Animals 10, no. 3: 460. https://doi.org/10.3390/ani10030460
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