Downregulated HIPK2 Expression in T Cells Is Associated with Occult Hepatitis B Virus Infection
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Subjects
2.2. Qualitative Assays of HBV Serological Markers
2.3. Quantitative Assays of Anti-HBs
2.4. Collection of Peripheral Blood Mononuclear Cells (PBMCs)
2.5. Construction of Libraries and Single-Cell RNA Sequencing
2.6. Quality Control and Determination of the Major Cell Types in the Single-Cell Data
2.7. Functional Analysis of Marker Genes or Differential Genes
2.8. Gene Set Enrichment Analysis (GSEA) Analysis
2.9. Functional Association Network and Protein-Protein Interaction (PPI) Network Analyses of HIPK2
2.10. Measurement of Serum HIPK2 Protein
2.11. Statistical Analyses
3. Results
3.1. General Characteristics of the Study Subjects
3.2. Single-Cell Atlas of PBMCs from the Subjects with OBI
3.3. The Single-Cell Landscape of T Cells
3.4. Downregulated Expression of the HIPK2 Gene Is Associated with OBI
3.5. DEGs Enrichment Analysis
3.6. Protein–Protein Interaction Scores Between Hipk2 and Selected Partners
3.7. Low Concentrations of Serum Hipk2 Protein Were Associated with OBI
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| anti-HBc | hepatitis B core antibody |
| anti-HBs | hepatitis B surface antibody |
| avg_log2FC | average log2 fold change |
| cDC | conventional dendritic cells |
| cDNA | complementary DNA |
| DEGs | differentially expressed genes |
| DNBs | DNA nanoballs |
| GO | gene ontology |
| GSEA | gene set enrichment analysis |
| HBV | hepatitis B virus |
| HBsAg | hepatitis B surface antigen |
| HCC | hepatocellular carcinoma |
| HIPK2 | homeodomain-interacting protein kinase 2 |
| ICHC | inactive chronic HBsAg carriers |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| K-S test | Kolmogorov-Smirnov test |
| MAIT | mucosal-associated invariant T cells |
| mRNA | messenger RNA |
| NES | normalized enrichment score |
| NK cells | natural killer cells |
| OBI | occult HBV infection |
| PBMCs | peripheral blood mononuclear cells |
| PCR | polymerase chain reaction |
| pDC | plasmacytoid dendritic cells |
| PPI | protein–protein interaction |
| scRNA-seq | single-cell RNA sequencing |
| SD | standard deviation |
| STAT3 | signal transducer and activator of transcription 3 |
| TP53 | tumour protein p53 |
| UMAP | uniform manifold approximation and projection |
| VSV | vesicular stomatitis virus |
References
- Kwak, M.S.; Kim, Y.J. Occult hepatitis B virus infection. World J. Hepatol. 2014, 6, 860–869. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Scheifele, D.W. Will Infant Hepatitis B Immunization Protect Adults? Pediatr. Infect. Dis. J. 2019, 38, S64–S66. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Chang, M.-H.; Chen, C.-J.; Lai, M.-S.; Hsu, H.M.; Wu, T.-C.; Kong, M.-S.; Liang, D.-C.; Shau, W.Y.; Chen, D.-S. Universal hepatitis B vaccination in Taiwan and the incidence of hepatocellular carcinoma in children. Taiwan Childhood Hepatoma Study Group. N. Engl. J. Med. 1997, 336, 1855–1859. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- McMahon, B.J.; Bulkow, L.R.; Singleton, R.J.; Williams, J.; Snowball, M.; Homan, C.; Parkinson, A.J. Elimination of hepatocellular carcinoma and acute hepatitis B in children after universal infant vaccination in Alaska. Hepatology 2011, 54, 801–807. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Boccalini, S.; Bonito, B.; Zanella, B.; Liedl, D.; Bonanni, P.; Bechini, A. The First 30 Years of the Universal Hepatitis-B Vaccination-Program in Italy: A Health Strategy with a Relevant and Favorable Economic-Profile. Int. J. Environ. Res. Public Health 2022, 19, 16365. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- World Health Organization (WHO). Hepatitis B. Available online: https://www.who.int/news-room/fact-sheets/detail/hepatitis-b (accessed on 30 April 2026).
- Tabor, E.; Hoofnagle, J.H.; Smallwood, L.A.; Drucker, J.A.; Pineda-Tamondong, G.C.; Ni, L.Y.; Greenwalt, T.J.; Barker, L.F.; Gerety, R.J. Studies of donors who transmit posttransfusion hepatitis. Transfusion 1979, 19, 725–731. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Xia, R.; Peng, J.; He, J.; Jiang, P.; Yuan, C.; Liu, X.; Yao, Y. The Serious Challenge of Occult Hepatitis B Virus Infection-Related Hepatocellular Carcinoma in China. Front. Microbiol. 2022, 13, 840825. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Eilard, A.; Andersson, M.; Ringlander, J.; Wejstål, R.; Norkrans, G.; Lindh, M. Vertically acquired occult hepatitis B virus infection may become overt after several years. J. Infect. 2019, 78, 226–231. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Mak, L.Y.; Wong, D.K.; Pollicino, T.; Raimondo, G.; Hollinger, F.B.; Yuen, M.F. Occult hepatitis B Infection and hepatocellular carcinoma: Epidemiology, virology, hepatocarcinogenesis and clinical significance. J. Hepatol. 2020, 73, 952–964. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Satake, M.; Sugiyama, M.; Mizokami, M.; Tanaka, J. Incidences of new hepatitis B infection and anti-hepatitis B core-negative occult hepatitis B infection among Japanese blood donors in relation to anti-hepatitis B surface antigen levels. J. Med. Virol. 2024, 96, e29823. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Eilard, A.; Andersson, M.E.; Wejstål, R.; Norkrans, G.; Lindh, M. Occult hepatitis B infection in children born to HBeAg-positive women confers a low long-term risk for HBsAg-positive infection. Infection 2024, 52, 2351–2357. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ostankova, Y.V.; Shchemelev, A.N.; Serikova, E.N.; Kusevitskaya, M.B.; Sannikov, M.V.; Gorskaya, O.A.; Basina, V.V.; Shirshova, N.Y.; Mashkov, I.A.; Zueva, E.B.; et al. Prevalence and Molecular Characterization of Chronic and Occult Hepatitis B Virus Infection Among Pregnant Women in St. Petersburg, Russia. Int. J. Mol. Sci. 2025, 26, 9079. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sondlane, T.H.; Mawela, L.; Razwiedani, L.L.; Selabe, S.G.; Lebelo, R.L.; Rakgole, J.N.; Mphahlele, M.J.; Dochez, C.; De Schryver, A.; Burnett, R.J. High prevalence of active and occult hepatitis B virus infections in healthcare workers from two provinces of South Africa. Vaccine 2016, 34, 3835–3839. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Ji, D.-Z.; Pang, X.-Y.; Shen, D.-T.; Liu, S.-N.; Goyal, H.; Xu, H.-G. Global prevalence of occult hepatitis B: A systematic review and meta-analysis. J. Viral Hepat. 2022, 29, 317–329. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Mu, S.-C.; Lin, Y.-M.; Jow, G.M.; Chen, B.-F. Occult hepatitis B virus infection in hepatitis B vaccinated children in Taiwan. J. Hepatol. 2009, 50, 264–272. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wang, R.; Liu, C.; Chen, T.; Wang, Y.; Fan, C.; Lu, L.; Lu, F.; Qu, C. Neonatal hepatitis B vaccination protects mature adults from occult virus infection. Hepatol. Int. 2021, 15, 328–337. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Hu, A.-Q.; Cai, Q.-Y.; Zhang, M.; Liu, H.-Y.; Wang, T.-L.; Han, W.-H.; Li, Q.; Fan, W.; Li, Y.-J.; He, Y.-N.; et al. Overt and occult hepatitis B infection after neonatal vaccination: Mother-to-infant transmission and HBV vaccine effectiveness. Int. J. Infect. Dis. 2021, 104, 601–609. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Zhong, G.; Jiang, Z.-H.; Wang, X.-Y.; Chen, Q.-Y.; Zhang, L.-J.; Hu, L.-P.; Huang, M.-L.; Huang, Y.-B.; Hu, X.; Zhang, W.-W.; et al. Increasing Prevalence of Occult HBV Infection in Adults Vaccinated Against Hepatitis B at Birth. Vaccines 2025, 13, 174. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Liu, C.; Wu, T.; Fan, F.; Liu, Y. A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling. bioRxiv 2019. bioRxiv:818450. [Google Scholar] [CrossRef] [Scilit]
- Hao, Y.-H.; Stuart, T.; Kowalski, M.H.; Choudhary, S.; Hoffman, P.; Hartman, A.; Srivastava, A.; Molla, G.; Madad, S.; Fernandez-Granda, C.; et al. Dictionary learning for integrative, multimodal and scalable single-cell analysis. Nat. Biotechnol. 2024, 42, 293–304. [Google Scholar] [PubMed]
- Gayoso, A.; Shor, J.; Carr, A.J.; Sharma, R.; Pe’er, D. GitHub: DoubletDetection. 2019. Available online: https://zenodo.org/records/2678042 (accessed on 30 April 2026).
- Raimondo, G.; Caccamo, G.; Filomia, R.; Pollicino, T. Occult HBV infection. Semin. Immunopathol. 2013, 35, 39–52. [Google Scholar] [PubMed]
- Jiang, X.; Tian, J.; Song, L.; Meng, J.; Yang, Z.; Qiao, W.; Zou, J. Multi-omic molecular characterization and diagnostic biomarkers for occult hepatitis B infection and HBsAg-positive hepatitis B infection. Front. Endocrinol. 2024, 15, 1409079. [Google Scholar] [CrossRef] [Scilit]
- Zerbini, A.; Pilli, M.; Boni, C.; Fisicaro, P.; Penna, A.; Di Vincenzo, P.; Giuberti, T.; Orlandini, A.; Raffa, G.; Pollicino, T.; et al. The characteristics of the cell-mediated immune response identify different profiles of occult hepatitis B virus infection. Gastroenterology 2008, 134, 1470–1481. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Calzado, M.A.; Renner, F.; Roscic, A.; Schmitz, M.L. HIPK2: A versatile switchboard regulating the transcription machinery and cell death. Cell Cycle 2007, 6, 139–143. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Cheung, K.L.; Jaganathan, A.; Hu, Y.; Xu, F.; Lejeune, A.; Sharma, R.; Caescu, C.I.; Meslamani, J.; Vincek, A.; Zhang, F.; et al. HIPK2 directs cell type-specific regulation of STAT3 transcriptional activity in Th17 cell differentiation. Proc. Natl. Acad. Sci. USA 2022, 119, e2117112119. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Cao, L.; Yang, G.; Gao, S.; Jing, C.; Montgomery, R.R.; Yin, Y.; Wang, P.; Fikrig, E.; You, F. HIPK2 is necessary for type I interferon-mediated antiviral immunity. Sci. Signal. 2019, 12, eaau4604. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Wang, Y.; Debatin, K.M.; Hug, H. HIPK2 overexpression leads to stabilization of p53 protein and increased p53 transcriptional activity by decreasing Mdm2 protein levels. BMC Mol. Biol. 2001, 2, 8. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Lim, H.Y.; Han, J.; Yoon, H.; Jang, K.L. Tumor Suppressor p53 Inhibits Hepatitis B Virus Replication by Downregulating HBx via E6AP-Mediated Proteasomal Degradation in Human Hepatocellular Carcinoma Cell Lines. Viruses 2022, 14, 2313. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Shiota, G.; Oyama, K.; Udagawa, A.; Tanaka, K.; Nomi, T.; Kitamura, A.; Tsutsumi, A.; Noguchi, N.; Takano, Y.; Yashima, K.; et al. Occult hepatitis B virus infection in HBs antigen-negative hepatocellular carcinoma in a Japanese population: Involvement of HBx and p53. J. Med. Virol. 2000, 62, 151–158. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Saitta, C.; Pollicino, T.; Raimondo, G. Occult Hepatitis B Virus Infection: An Update. Viruses 2022, 14, 1504. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Delghandi, S.; Raoufinia, R.; Shahtahmasbi, S.; Meshkat, Z.; Gouklani, H.; Gholoobi, A. An overview of occult hepatitis B infection (OBI) with emphasis on HBV vaccination. Heliyon 2024, 10, e37097. [Google Scholar] [CrossRef] [Scilit] [PubMed]
- Sombroek, D.; Hofmann, T.G. How cells switch HIPK2 on and off. Cell Death Differ. 2009, 16, 187–194. [Google Scholar] [PubMed]
- Marchingo, J.M.; Spinelli, L.; Pathak, S.; Cantrell, D.A. PIM kinase control of CD8 T cell protein synthesis and cell trafficking. eLife 2025, 13, RP98622. [Google Scholar] [CrossRef] [PubMed]






| Code | Group | Gender | Age | HBsAg | Anti-HBs (mIU/mL) | HBeAg | Anti-HBe | Anti-HBc | HBV DNA (IU/mL) | HIPK2 (μmol/L) |
|---|---|---|---|---|---|---|---|---|---|---|
| A1 | OBI | M | 37 | - | 0 | - | - | - | 227.431 | 33.439 |
| A7 | OBI | M | 36 | - | 0 | - | - | - | 144.763 | 30.87 |
| B4 | OBI | M | 34 | - | >1000.000 | - | - | - | 216.221 | 24.825 |
| B7 | OBI | M | 36 | - | >1000.000 | - | - | + | 237.01 | 21.395 |
| B9 | OBI | M | 31 | - | >1000.000 | - | - | - | 132.427 | 24.995 |
| Average | 27.1048 | |||||||||
| D1 | ICHC # | M | 37 | + | 0 | - | + | + | ND * | 333.785 |
| D10 | ICHC | M | 37 | + | 0 | - | + | + | ND | 332.335 |
| D2 | ICHC | M | 32 | + | 0 | - | + | + | ND | 329.79 |
| D3 | ICHC | F | 34 | + | 0 | - | + | + | ND | 332.155 |
| D8 | ICHC | M | 34 | + | 0 | - | - | + | ND | 301.78 |
| Average | 325.969 | |||||||||
| A2 | Control | F | 36 | - | 0 | - | - | - | 0 | 32.425 |
| A3 | Control | M | 31 | - | 0 | - | - | - | 0 | 30.07 |
| A4 | Control | F | 36 | - | 0 | - | - | - | 0 | 34.205 |
| A5 | Control | M | 35 | - | 0 | - | - | - | 0 | 44.305 |
| A6 | Control | M | 36 | - | 0 | - | - | + | 0 | 35.825 |
| Average | 35.366 |
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Share and Cite
Jiang, Z.-H.; Huang, M.-L.; Hu, L.-P.; Wang, X.-Y.; Chen, Q.-Y.; Zhang, L.-J.; Zhang, N.; Huang, Y.; Harrison, T.J.; Zhong, G.; et al. Downregulated HIPK2 Expression in T Cells Is Associated with Occult Hepatitis B Virus Infection. Microorganisms 2026, 14, 1523. https://doi.org/10.3390/microorganisms14071523
Jiang Z-H, Huang M-L, Hu L-P, Wang X-Y, Chen Q-Y, Zhang L-J, Zhang N, Huang Y, Harrison TJ, Zhong G, et al. Downregulated HIPK2 Expression in T Cells Is Associated with Occult Hepatitis B Virus Infection. Microorganisms. 2026; 14(7):1523. https://doi.org/10.3390/microorganisms14071523
Chicago/Turabian StyleJiang, Zhi-Hua, Mei-Lin Huang, Li-Ping Hu, Xue-Yan Wang, Qin-Yan Chen, Lu-Juan Zhang, Ning Zhang, Ying Huang, Tim J. Harrison, Ge Zhong, and et al. 2026. "Downregulated HIPK2 Expression in T Cells Is Associated with Occult Hepatitis B Virus Infection" Microorganisms 14, no. 7: 1523. https://doi.org/10.3390/microorganisms14071523
APA StyleJiang, Z.-H., Huang, M.-L., Hu, L.-P., Wang, X.-Y., Chen, Q.-Y., Zhang, L.-J., Zhang, N., Huang, Y., Harrison, T. J., Zhong, G., & Fang, Z.-L. (2026). Downregulated HIPK2 Expression in T Cells Is Associated with Occult Hepatitis B Virus Infection. Microorganisms, 14(7), 1523. https://doi.org/10.3390/microorganisms14071523

