The Genetic Polymorphisms of 24 Base Pair Duplication and Point G102S of Human Chitotriosidase to Bancroftian Filariasis at the Thai–Myanmar Border
Abstract
:1. Introduction
2. Results
2.1. Demographic and Pathology Information of Study Participants
2.2. Genotyping of CHIT1 Polymorphisms: 24 bp Duplication and p. G102S
2.3. Association between CHIT1 Polymorphisms and Susceptibility to Bancroftian Filariasis in Thai and Myanmar Populations
2.3.1. Genotype Frequencies of CHIT1 Polymorphisms in BF Patients and EN
2.3.2. Allele Frequencies of CHIT1 Polymorphisms in BF Patients and EN
3. Discussion
4. Materials and Methods
4.1. Study Areas and Populations
4.2. DNA Extraction from Blood Samples
4.3. Genotyping for CHIT1 Polymorphisms
4.4. Statistical Analysis
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Polymorphism | SNP ID | SNP Influence | Primer Sequences |
---|---|---|---|
24 bp duplication | Rs 772902435 | Associated with an abnormal mRNA splicing of CHIT1 and results in the production of inactive truncated CHIT1 [21] | F 5′-AGC TAT CTG AAG CAG AAG-3′ R 5′-GGA GGA GCC GGC AAA GTC-3′ [6] |
p. G102S | Rs 750476665 | Associated with the substitution of glycine (Gly) to serine (Ser) at the amino acid position 102 of CHIT1, resulting in decreasing of CHIT1 enzymatic activity and specificity [21] | F 5′-GGC AGC TGG CAG AGT AAA TCC-3′ R 5′-CCC AGA AGG AAA TTC AGC CC-3′ |
Characteristics | Bancroftian Filariasis Patients | Endemic Normal |
---|---|---|
Gender (M/F) | 27/24 | 19/18 |
Median age (range) | 30.6 (16–61) | 31.8 (18–68) |
Mean age (±SD) | 29.9 ± 12.5 | 30.8 ± 12.9 |
Treatment | No | No |
Bed net usage | Yes | Yes |
Pathology | None | None |
Ag Test (ICT card test and Og4C3 ELISA) | All positive | All negative |
W. bancrofti circulating antigen levels (U/mL, range) | 29,986 (133–71,339) | <32 (<32) |
Genotype | Number of Endemic Normal (%) | Number of Bancroftian Filariasis Patients (%) | p Value | |
---|---|---|---|---|
24 bp duplication | WT/WT | 5 (11.1%) | 6 (17.2%) | 0.623 |
WT/INS | 22 (48.9%) | 18 (51.4%) | ||
INS/INS | 18 (40.0%) | 11 (31.4%) | ||
Total | 45 (100.0%) | 35 (100.0%) | ||
p. G102S | G/G | 15 (40.5%) | 22 (43.1%) | 0.876 |
G/A | 15 (40.5%) | 18 (35.3%) | ||
A/A | 7 (19.0%) | 11 (21.6%) | ||
Total | 37 (100.0%) | 51 (100.0%) |
Genotype | Number of Endemic Normal (%) | Number of Bancroftian Filariasis Patients (%) | p Value | |
---|---|---|---|---|
24 bp duplication | WT | 32 (35.6%) | 30 (42.9%) | 0.347 |
INS | 58 (64.4%) | 40 (57.1%) | ||
Total | 90 (100.0%) | 70 (100.0%) | ||
p. G102S | G | 45 (60.8%) | 62 (60.8%) | 0.997 |
A | 29 (39.2%) | 40 (39.2%) | ||
Total | 74 (100.0%) | 102 (100.0%) |
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Sanprasert, V.; Charuchaibovorn, S.; Nuchprayoon, S. The Genetic Polymorphisms of 24 Base Pair Duplication and Point G102S of Human Chitotriosidase to Bancroftian Filariasis at the Thai–Myanmar Border. Pathogens 2019, 8, 41. https://doi.org/10.3390/pathogens8010041
Sanprasert V, Charuchaibovorn S, Nuchprayoon S. The Genetic Polymorphisms of 24 Base Pair Duplication and Point G102S of Human Chitotriosidase to Bancroftian Filariasis at the Thai–Myanmar Border. Pathogens. 2019; 8(1):41. https://doi.org/10.3390/pathogens8010041
Chicago/Turabian StyleSanprasert, Vivornpun, Sarit Charuchaibovorn, and Surang Nuchprayoon. 2019. "The Genetic Polymorphisms of 24 Base Pair Duplication and Point G102S of Human Chitotriosidase to Bancroftian Filariasis at the Thai–Myanmar Border" Pathogens 8, no. 1: 41. https://doi.org/10.3390/pathogens8010041
APA StyleSanprasert, V., Charuchaibovorn, S., & Nuchprayoon, S. (2019). The Genetic Polymorphisms of 24 Base Pair Duplication and Point G102S of Human Chitotriosidase to Bancroftian Filariasis at the Thai–Myanmar Border. Pathogens, 8(1), 41. https://doi.org/10.3390/pathogens8010041