Artificial Intelligence-Based Approach for Automated Gonad Volume Quantification Using Magnetic Resonance Imaging in Healthy Adolescents Across Puberty
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Population
2.2. Image Acquisition and Processing
2.3. Ovary and Ovarian Cyst Segmentation AI Model Development
2.4. Testicle Segmentation AI Model Development
2.5. Model Evaluation and Statistical Analysis
3. Results
3.1. Performance Evaluation of AI Models
3.1.1. Ovary and Ovarian Cyst Segmentation AI
3.1.2. Testicle Segmentation AI
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| AI | Artificial Intelligence |
| MRI | Magnetic Resonance Imaging |
| T2W | T2-Weighted |
| T1W | T1-Weighted |
| FS | Fat-Saturated |
| US | Ultrasound |
| PCOS | Polycystic Ovary Syndrome |
| TSE | T2 Turbo Spin Echo |
| GT | Ground Truth |
| T2WFS | T2W MRIs Resampled to FS T2W MRI |
| FST2W | FS T2W MRI Resampled to T2W MRI |
| 3D-FullRes | 3D Full-Resolution nnUnet Configuration |
| 3d_FullRes_ResEnc | 3D Full-Resolution nnUnet Configuration with a Residual Encoder |
| TP | True Positives |
| FN | False Negatives |
| FP | False Positives |
| PPV | Positive Predictive Value |
| DSC | Dice Similarity Coefficient |
| DSCov | DSC for Ovaries |
| DSCCY | DSC for Ovarian Cysts |
| DSCTS | DSC for Testicles |
| TOV | Total Ovary Volume |
| TCV | Total Cyst Volume |
| TTV | Total Testicular Volume |
| MD | Mean Difference |
| CI | Confidence Interval |
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| Girls (n = 44) | Boys (n = 88) | ||
|---|---|---|---|
| Modality | T2W | FS T2W | T2W |
| No of Scans | 15 (6, 26) | 11 (5, 22) | 6 (1, 12) |
| Phase Field of View (%) | 100 (81.08, 100) | 100 (80.82, 100) | 100 (80, 100) |
| Acquisition matrix | 160 × 160 (120 × 119, 180 × 179) | 320 × 320 (240 × 240, 360 × 359) | 160 × 160 (140 × 140, 180 × 177) |
| Repetition time (msec) | 1600 | 1600 (1600, 1753.23) | 1600 |
| Echo time (msec) | 120 | 120 | 120 |
| Flip angle (degrees) | 90 | 90 | 90 |
| Pixel Spacing (mm) | 0.6 (0.52, 0.6) | 0.75 (0.47, 0.75) | 0.6 (0.56, 0.75) |
| Slice thickness (mm) | 2 (2 [193 scans], 4 [ 1 scan]) | 2 | 2 (2 [486 scans], 4 [5 scans]) |
| spacing between slices | 2.2 (2.2 [n = 193 scans], 5 [n= 1 scans]) | 2.2 | 2.2 (2.2 [486 scans], 5 [5 scans]) |
| Image shape (pixels) | 400 × 400 (320 × 320, 480 × 480) | 320 × 320 (320 × 320, 480 × 480) | 400 × 400 (320 × 320, 480 × 480) |
| Reconstruction Diameter (mm) | 240 (180, 270) | 240 (180, 270) | 240 (210, 270) |
| Time for acquisition (min:sec) | 1:36 (0:48, 2:08) | 1:36 (1:36, 3:12) | 1:36 (0:48, 3:00) |
| Echo train length | 51 (49, 84) | 134 (76, 138) | 51 (51, 104) |
| Number of Averages | 1 (1, 2) | 1 (1, 2) | 1 (1, 3) |
| Manufacturer | Philips Medical Systems | Philips Medical Systems | Philips Medical Systems |
| Model Name | Achieva | Achieva | Achieva |
| Organ/Cyst Level | T2W | FS | T2WFS + FS | T2W + FST2W | ||||
|---|---|---|---|---|---|---|---|---|
| Ovary | Cyst | Ovary | Cyst | Ovary | Cyst | Ovary | Cyst | |
| TP | 72 | 7 | 72 | 7 | 72 | 7 | 72 | 7 |
| FN | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| FP | 0 | 0 | 0 | 1 | 0 | 2 | 0 | 1 |
| Sensitivity | 100 | 100 | 100 | 100 | 100 | 100 | 100 | 100 |
| PPV | 100 | 100 | 100 | 87.5 | 100 | 77.78 | 100 | 87.5 |
| Average Dice (min, max) | 0.75 (0.28, 0.90) | 0.85 (0.51, 0.95) | 0.85 (0.53, 0.94) | 0.78 (0, 0.96) | 0.86 (0.63, 0.94) | 0.69 (0, 0.96) | 0.86 (0.58, 0.93) | 0.78 (0, 0.96) |
| T2W | FS | T2WFS + FS | T2W + FST2W | |
|---|---|---|---|---|
| TOV | 2.4 (−8.8, 14) | 1.3 (−5.9, 8.5) | 0.87 (−5.78, 7.5) | −1.21 (−6.0, 8.4) |
| TCV | 0.39 (−3.6, 4.4) | −0.56 (−4.4, 3.3) | −0.41 (−3.3, 2.5) | 0.46 (−4.3, 3.3) |
| Summary | Testicularside-sep Model | TesticularWhole Model | ||||||
|---|---|---|---|---|---|---|---|---|
| 3d_FullRes | 3d_FullRes_ResEnc | 3d_FullRes | 3d_FullRes_ResEnc | |||||
| Right Testicle | Left Testicle | Overall | Right Testicle | Left Testicle | Overall | Overall | Overall | |
| TP | 56 | 59 | 115 | 57 | 59 | 116 | 115 | 115 |
| FN | 3 | 0 | 3 | 2 | 0 | 2 | 3 | 3 |
| FP | 1 | 0 | 1 | 1 | 0 | 1 | 3 | 2 |
| Sensitivity | 94.92 | 100 | 97.46 | 96.61 | 100 | 98.31 | 97.35 | 97.35 |
| PPV | 98.25 | 100 | 99.14 | 98.28 | 100 | 99.15 | 97.35 | 98.21 |
| Average Dice (min, max) | 0.90 (0.52, 0.97) | 0.90 (0.49, 0.97) | 0.90 (0.52, 0.97) | 0.91 (0.54, 0.97) | ||||
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Haque, F.; Harmon, S.A.; Kumnick, A.; Soliman, M.; Berman, K.F.; Yanovski, J.A.; Turkbey, E.B.; Nieman, L.K.; Gomez-Lobo, V.; Wei, S.-M.; et al. Artificial Intelligence-Based Approach for Automated Gonad Volume Quantification Using Magnetic Resonance Imaging in Healthy Adolescents Across Puberty. Diagnostics 2026, 16, 1357. https://doi.org/10.3390/diagnostics16091357
Haque F, Harmon SA, Kumnick A, Soliman M, Berman KF, Yanovski JA, Turkbey EB, Nieman LK, Gomez-Lobo V, Wei S-M, et al. Artificial Intelligence-Based Approach for Automated Gonad Volume Quantification Using Magnetic Resonance Imaging in Healthy Adolescents Across Puberty. Diagnostics. 2026; 16(9):1357. https://doi.org/10.3390/diagnostics16091357
Chicago/Turabian StyleHaque, Fahmida, Stephanie A. Harmon, Allison Kumnick, Mary Soliman, Karen F. Berman, Jack A. Yanovski, Evrim B. Turkbey, Lynnette K. Nieman, Veronica Gomez-Lobo, Shau-Ming Wei, and et al. 2026. "Artificial Intelligence-Based Approach for Automated Gonad Volume Quantification Using Magnetic Resonance Imaging in Healthy Adolescents Across Puberty" Diagnostics 16, no. 9: 1357. https://doi.org/10.3390/diagnostics16091357
APA StyleHaque, F., Harmon, S. A., Kumnick, A., Soliman, M., Berman, K. F., Yanovski, J. A., Turkbey, E. B., Nieman, L. K., Gomez-Lobo, V., Wei, S.-M., Schmidt, P. J., & Turkbey, B. (2026). Artificial Intelligence-Based Approach for Automated Gonad Volume Quantification Using Magnetic Resonance Imaging in Healthy Adolescents Across Puberty. Diagnostics, 16(9), 1357. https://doi.org/10.3390/diagnostics16091357

