Centrifugation Versus Centrifugation-Free Stool Processing: Can the Simple One-Step Method Reliably Diagnose Pediatric Pulmonary Tuberculosis Using Xpert MTB/RIF Ultra?
Abstract
1. Introduction
2. Materials and Methods
2.1. Study Settings, Design, and Population
2.2. Stool Processing by the CBP Method and Testing with the Ultra Assay
2.3. Stool Processing by the SOS Method and Testing with Ultra Assay
2.4. Statistical Analysis
3. Results
3.1. Demographic and Clinical Characteristics
3.2. Comparison Between the Centrifugation and SOS Methods for Detection of MTBC Using Ultra on Stool Samples
3.3. Comparison of the Centrifugation and SOS Methods Under Different Bacterial Burdens
4. Discussion
5. Conclusions
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
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| Characteristics | Total (n = 281) (%) |
|---|---|
| Age in years | |
| Median (IQR) | 6.0 (1.6–10.0) |
| ≤2 | 86 (30.6%) |
| >2–<5 | 35 (12.5%) |
| 5–9 | 86 (30.6%) |
| 10–14 | 74 (26.3%) |
| Sex | |
| Male | 152 (54.1%) |
| Female | 129 (45.9%) |
| TB-suggestive symptoms | |
| Cough ≥ 2 weeks | 241 (85.8%) |
| Fever ≥ 2 weeks | 236 (84%) |
| Weight loss | 220 (78.3%) |
| Fatigue | 40 (14.2%) |
| TB contact history within past 12 months | 34 (12.1%) |
| Stool-Processing Method | CBP Method | |||||||
|---|---|---|---|---|---|---|---|---|
| Positive | Negative | Total | PPA (95% CI) | NPA (95% CI) | Overall Agreement (%) | Kappa | ||
| SOS method | Positive | 97 | 0 | 97 | 50.8 (43.5–58.1) | 100 (96.0–100) | 66.6 (60.7–72.0) | 0.398 |
| Negative | 94 | 90 | 184 | |||||
| Total | 191 | 90 | 281 | |||||
| Stool-Processing Method | Ultra-Negative (n = 90) n (%; 95% CI) | CBP Method | ||||
|---|---|---|---|---|---|---|
| Ultra-Positive (n = 191) | ||||||
| High (n = 4) n (%; 95% CI) | Medium (n = 7) n (%; 95% CI) | Low (n = 37) n (%; 95% CI) | Very Low (n = 42) n (%; 95% CI) | Trace (n = 101) n (%; 95% CI) | ||
| SOS Method | ||||||
| Negative | 90 (100%; 96–100) | - | - | 1 (2.70%; 0.1–14.2) | 7 (16.7%; 7.0–31.4) | 86 (85.1%; 76.7–91.4) |
| Positive | - | 4 (100%; 39.8–100) | 7 (100%; 59.0–100) | 36 (97.3%; 85.8–99.9) | 35 (83.3%; 68.6–93.0) | 15 (14.9%; 8.6–23.3) * |
| Bacterial burden among detected samples | ||||||
| High | - | 2 (50%; 6.8–93.2) | - | - | - | - |
| Medium | - | 1 (25%; 0.6–80.6) | 6 (85.7%; 42.1–99.6) | - | - | - |
| Low | - | 1 (25%; 0.6–80.6) | 1 (14.3%; 0.4–57.9) | 21 (58.4%; 40.8–74.5) | - | - |
| Very Low | - | - | - | 12 (33.3%; 18.6–51.0) | 22 (62.9%; 44.9–78.5) | 4 (26.7%; 7.8–55.1) |
| Trace | - | - | - | 3 (8.3%; 1.8–22.5) | 13 (37.1%; 21.5–55.1) | 11 (73.3%; 44.9–92.2) |
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Rahman, S.M.M.; Kabir, S.; Choudhury, S.; Miah, S.; Rahman, T.; Hasan, M.J.; Uddin, M.K.M.; Nazneen, A.; Ahmed, S.; Maug, A.K.J.; et al. Centrifugation Versus Centrifugation-Free Stool Processing: Can the Simple One-Step Method Reliably Diagnose Pediatric Pulmonary Tuberculosis Using Xpert MTB/RIF Ultra? Diagnostics 2026, 16, 338. https://doi.org/10.3390/diagnostics16020338
Rahman SMM, Kabir S, Choudhury S, Miah S, Rahman T, Hasan MJ, Uddin MKM, Nazneen A, Ahmed S, Maug AKJ, et al. Centrifugation Versus Centrifugation-Free Stool Processing: Can the Simple One-Step Method Reliably Diagnose Pediatric Pulmonary Tuberculosis Using Xpert MTB/RIF Ultra? Diagnostics. 2026; 16(2):338. https://doi.org/10.3390/diagnostics16020338
Chicago/Turabian StyleRahman, S. M. Mazidur, Senjuti Kabir, Sabrina Choudhury, Sohag Miah, Tanjina Rahman, Md. Jahid Hasan, Mohammad Khaja Mafij Uddin, Arifa Nazneen, Shahriar Ahmed, Aung Kya Jai Maug, and et al. 2026. "Centrifugation Versus Centrifugation-Free Stool Processing: Can the Simple One-Step Method Reliably Diagnose Pediatric Pulmonary Tuberculosis Using Xpert MTB/RIF Ultra?" Diagnostics 16, no. 2: 338. https://doi.org/10.3390/diagnostics16020338
APA StyleRahman, S. M. M., Kabir, S., Choudhury, S., Miah, S., Rahman, T., Hasan, M. J., Uddin, M. K. M., Nazneen, A., Ahmed, S., Maug, A. K. J., & Banu, S. (2026). Centrifugation Versus Centrifugation-Free Stool Processing: Can the Simple One-Step Method Reliably Diagnose Pediatric Pulmonary Tuberculosis Using Xpert MTB/RIF Ultra? Diagnostics, 16(2), 338. https://doi.org/10.3390/diagnostics16020338

