Pulchragaricus rhodophyllus gen. et sp. nov. (Callistosporiaceae, Agaricales) from Yunnan, China, Based on Morphological and Molecular Data
Abstract
1. Introduction
2. Materials and Methods
2.1. Sampling and Morphological Studies
2.2. DNA Extraction, Amplification, and Sequencing
2.3. Phylogenetic Analyses
3. Results
3.1. Phylogenetic Results
3.2. Taxonomy
4. Discussion
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
References
- Vizzini, A.; Consiglio, G.; Marchetti, M.; Alvarado, P. Insights into the Tricholomatineae (Agaricales, Agaricomycetes): A new arrangement of Biannulariaceae and Callistosporium, Callistosporiaceae fam. nov., Xerophorus stat. nov., and Pleurocollybia incorporated into Callistosporium. Fungal Divers. 2020, 101, 211–259. [Google Scholar] [CrossRef]
- Wang, G.-S.; Cai, Q.; Hao, Y.-J.; Bau, T.; Chen, Z.-H.; Li, M.-X.; David, N.; Kraisitudomsook, N.; Yang, Z.-L. Phylogenetic and taxonomic updates of Agaricales, with an emphasis on Tricholomopsis. Mycology 2023, 15, 180–209. [Google Scholar] [CrossRef]
- Sánchez-García, M.; Henkel, T.W.; Aime, M.C.; Smith, M.E.; Matheny, P.B. Guyanagarika, a new ectomycorrhizal genus of Agaricales from the Neotropics. Fungal Biol. 2016, 120, 1540–1553. [Google Scholar] [CrossRef]
- Raj, K.N.A.; Latha, K.P.D.; Leelavathy, K.M.; Manimohan, P. Anupama: A new genus of Biannulariaceae (Agaricales) from tropical India. Mycol. Prog. 2019, 18, 659–669. [Google Scholar] [CrossRef]
- Xu, J.; Yu, X.; Idrees, M.; Zhang, C.; Li, Y. Morphology and phylogeny reveal Callistosporium subpetaloideum sp. nov. (Callistosporiaceae) from China. Curr. Microbiol. 2021, 78, 2122–2129. [Google Scholar] [CrossRef]
- Singer, R. New genera of fungi. Mycologia 1944, 36, 358–368. [Google Scholar] [CrossRef]
- Pegler, D.N.; Lodge, D.J.; Nakasone, K.K. The pantropical genus Macrocybe gen. nov. Mycologia 1998, 90, 494–504. [Google Scholar] [CrossRef]
- Kantharaja, R.; Krishnappa, M. Macrocybe sardoa (Callistosporiaceae, Agaricales) a new record from India. Mycopathol. Res. 2021, 59, 279–283. [Google Scholar]
- Lavorato, C.; Vizzini, A.; Ge, Z.-W.; Contu, M. Redescription of Clitocybe umbrinopurpurascens (Basidiomycota, Agaricales) and revision of Neohygrophorus and Pseudoomphalina. Phytotaxa 2015, 219, 43–57. [Google Scholar] [CrossRef]
- Noordeloos, M.E. Entolomataceae. In Flora Agaricina Neerlandica; Bas, C., Kuyper, T.W., Noordeloos, M.E., Vellinga, E.C., Eds.; A.A. Balkema: Rotterdam, The Netherlands, 1988; Volume 1, p. 182. [Google Scholar]
- Yang, S.-L.; Nie, J.; Ye, Y.-S.; Mo, M.-H.; Jiang, X.-Y.; Huang, Y.-H.; Zheng, J.-R.; Liu, Y.; Yuan, J.-Y. Research status and prospect forecast of Tricholoma giganteum. J. Anhui Agric. Sci. 2016, 44, 9–12. [Google Scholar] [CrossRef]
- Mou, G.F.; Bau, T. Asproinocybaceae fam. nov. (Agaricales, Agaricomycetes) for accommodating the genera Asproinocybe and Tricholosporum, and description of Asproinocybe sinensis and Tricholosporum guangxiense sp. nov. J. Fungi 2021, 7, 1086. [Google Scholar] [CrossRef]
- Christensen, M.; Miller, S.L.; Tuthill, D. Colour standards: A review and evaluation in relation to Penicillium taxonomy. Mycol. Res. 1994, 98, 635–644. [Google Scholar] [CrossRef]
- Bas, C. Morphology and subdivision of Amanita and a monograph of its section Lepidella. Persoonia 1969, 5, 285–579. [Google Scholar]
- Doyle, J.J.; Doyle, J.L. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 1987, 19, 11–15. [Google Scholar]
- White, T.J.; Bruns, T.; Lee, S.; Taylor, J. Amplification and Direct Sequencing of Fungal Ribosomal RNA Genes for Phylogenetics. In PCR Protocols: A Guide to Methods and Applications; Innis, M.A., Gelfand, D.H., Sninsky, J.J., White, T.J., Eds.; Academic Press: San Diego, CA, USA, 1990; pp. 315–322. [Google Scholar]
- Matheny, P.B.; Curtis, J.M.; Hofstetter, V.; Aime, M.C.; Moncalvo, J.M.; Ge, Z.W.; Yang, Z.L.; Slot, J.C.; Ammirati, J.F.; Baroni, T.J. Major clades of Agaricales: A multilocus phylogenetic overview. Mycologia 2006, 98, 982–995. [Google Scholar] [CrossRef]
- Jian, S.; Chen, X.; Yang, T.; Xu, X.; Gao, F.; Fang, Y.; Liu, J.; Zhang, C. Biotrophic and saprophytic fungi from the Rhodocybe-Clitopilus clade (Entolomataceae): Two new species and one new record in subtropical China. MycoKeys 2025, 116, 227–254. [Google Scholar] [CrossRef]
- Matheny, P.B. Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Mol. Phylogen. Evol. 2005, 35, 1–20. [Google Scholar] [CrossRef]
- Matheny, P.B.; Wang, Z.; Binder, M.; Curtis, J.M.; Lim, Y.W.; Nilsson, R.H.; Hughes, K.W.; Hofstetter, V.; Ammirati, J.F.; Schoch, C.L.; et al. Contributions of RPB2 and TEF1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Mol. Phylogen. Evol. 2007, 43, 430–451. [Google Scholar] [CrossRef] [PubMed]
- Zhao, D.; Ye, T.; Gao, F.; Jakovlić, I.; La, Q.; Tong, Y.; Liu, X.; Song, R.; Liu, F.; Lian, Z.M.; et al. PhyloSuite v2: The development of an all-in-one, efficient and visualization-oriented suite for molecular dating analysis and other advanced features. iMeta 2025, 4, e70095. [Google Scholar] [CrossRef]
- Katoh, K.; Standley, D.M. MAFFT multiple sequence alignment software version 7: Improvements in performance and usability. Mol. Biol. Evol. 2013, 30, 772–780. [Google Scholar] [CrossRef] [PubMed]
- Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 1999, 41, 95–98. [Google Scholar]
- Kalyaanamoorthy, S.; Minh, B.Q.; Wong, T.K.F.; von Haeseler, A.; Jermiin, L.S. ModelFinder: Fast model selection for accurate phylogenetic estimates. Nat. Methods 2017, 14, 587–589. [Google Scholar] [CrossRef]
- Nguyen, L.-T.; Schmidt, H.A.; von Haeseler, A.; Minh, B.Q. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Mol. Biol. Evol. 2015, 32, 268–274. [Google Scholar] [CrossRef]
- Ronquist, F.; Teslenko, M.; van der Mark, P.; Ayres, D.L.; Darling, A.; Höhna, S.; Larget, B.; Liu, L.; Suchard, M.A.; Huelsenbeck, J.P. MrBayes 3.2: Efficient bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012, 61, 539–542. [Google Scholar] [CrossRef] [PubMed]
- Tamura, K.; Stecher, G.; Kumar, S. MEGA11: Molecular evolutionary genetics analysis version 11. Mol. Biol. Evol. 2021, 38, 3022–3027. [Google Scholar] [CrossRef]
- Clémençon, H. Cytology and Plectology of the Hymenomycetes; Gebr. Borntraeger Verlagsbuchhanddlung: Stuttgart, Germany, 2012; p. 520. [Google Scholar]
- Kerrigan, R.W. Agaricus of North America. Mem. N. Y. Bot. Gard. 2016, 114, 1–574. [Google Scholar]
- Parra, L.A. Agaricus L. Allopsalliota Nauta & Bas, Part 2; Fungi Europaei; Candusso Edizioni s.a.s.: Alassio, Italy, 2013; p. 1168. [Google Scholar]
- Xu, Y.-D.; Jiang, L.; Yang, Z.L.; Liu, J.-W.; Cai, Q.; Xiao, Y.-Q.; Chen, Z.-H.; He, Z.-M. Lepista cremeoinvoluta and L. multiformis (Clitocybaceae, Agaricales), a new species and a newly recorded species from Southwestern China. Mycol. Prog. 2024, 23, 47. [Google Scholar] [CrossRef]
- Noordeloos, M.E.; Kuyper, T.W. Lepista. In Flora Agaricina Neerlandica; Bas, C., Kuyper, T.W., Noordeloos, M.E., Vellinga, E.C., Eds.; A.A. Balkema: Rotterdam, The Netherlands, 1995; Volume 3, p. 183. [Google Scholar]
- Ercole, E.; Vizzini, A. Leucopaxillus agrippinae, una nuova specie raccolta in Sicilia. Riv. Di Micol. 2012, 2, 99–114. [Google Scholar]
- Læssøe, T.; Petersen, J.H. Fungi of Temperate Europe; Princeton University Press: Princeton, NJ, USA, 2019; p. 813. [Google Scholar]
- Singer, R.; Smith, A.H. Additional notes on the genus Leucopaxillus. Mycologia 1947, 39, 725–736. [Google Scholar] [CrossRef]
- Vizzini, A.; Ercole, E.; Contu, M. A contribution to the ITS-LSU phylogeny of the genus Leucopaxillus (/tricholomatoid clade, Agaricales), with three new genera and notes on Porpoloma. Mycosphere 2012, 3, 79–90. [Google Scholar] [CrossRef]
- Lemmon, A.R.; Brown, J.M.; Stanger-Hall, K.; Lemmon, E.M. The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and bayesian inference. Syst. Biol. 2009, 58, 130–145. [Google Scholar] [CrossRef] [PubMed]
- Wiens, J.J.; Morrill, M.C. Missing data in phylogenetic analysis: Reconciling results from simulations and empirical data. Syst. Biol. 2011, 60, 719–731. [Google Scholar] [CrossRef] [PubMed]
- Lv, T.; Wang, S.; Wu, X.; Chen, D.; Ao, C.; Luo, H.; Li, E.; Tang, S.; Li, S. Asproinocybe hongyaniae sp. nov. (Agaricales, Basidiomycota) in Thailand. Phytotaxa 2024, 640, 16–26. [Google Scholar] [CrossRef]
- Ali, M.; Niazi, A.R.; Ashraf, U.; Anam, A.; Afshan, N.u.S.; Aime, M.C.; Khalid, A.N. Asproinocybe pakistanica sp. nov. and A. daleyae: First representatives of the genus Asproinocybe from Pakistan. Nord. J. Bot. 2026, 2026, e04698. [Google Scholar] [CrossRef]
- Baroni, T.J.; Bocsusis, N.; Lodge, D.J.; Lindner, D. A new species of Pleurocollybia (Tricholomataceae; Agaricales; Basidiomycetes) from Belize. Mycotaxon 2008, 103, 353–363. [Google Scholar] [CrossRef]
- He, Z.-M.; Chen, Z.-H.; Bau, T.; Wang, G.-S.; Yang, Z.L. Systematic arrangement within the family Clitocybaceae (Tricholomatineae, Agaricales): Phylogenetic and phylogenomic evidence, morphological data and muscarine-producing innovation. Fungal Divers. 2023, 123, 1–47. [Google Scholar] [CrossRef]
- Singer, R. The Agaricales in Modern Taxonomy, 4th ed.; Koeltz Scientific Books: Koenigstein, Germany, 1986; p. 981. [Google Scholar]
- Pegler, D.N.; Young, T.W.K. Basidiospore form in the British Leucopaxilleae. Kew Bull. 1973, 28, 365–379. [Google Scholar] [CrossRef]
- Noordeloos, M.E. Tricholoma. In Flora Agaricina Neerlandica; Bas, C., Kuyper, T.W., Noordeloos, M.E., Vellinga, E.C., Eds.; A.A. Balkema: Rotterdam, The Netherlands, 1999; Volume 4, p. 189. [Google Scholar]
- Ding, X.X.; Xu, X.; Cui, Y.Y.; Kost, G.; Wang, P.M.; Yang, Z.L. A fifty-locus phylogenetic analysis provides deep insights into the phylogeny of Tricholoma (Tricholomataceae, Agaricales). Persoonia 2023, 50, 1–26. [Google Scholar] [CrossRef]



| Genera | Habit * | Substrate | Location | References |
|---|---|---|---|---|
| Anupama | Tricholomatoid | Terricolous | India | Raj et al. [4] |
| Callistosporium | Collybioid-pleurotoid | Lignicolous | Eurasia, Americas, and North Africa | Singer [6] |
| Guyanagarika | Tricholomatoid | Ectomycorrhizal | Guyana | Sánchez-García et al. [3] |
| Macrocybe | Tricholomatoid | Terricolous | Subtropical to tropical areas | Pegler et al. [7] |
| Pseudolaccaria | Laccaria-like | Terricolous | Eurasia and USA | Lavorato et al. [9] |
| Xerophorus | Collybioid | Terricolous | Europe and Greater Antilles | Vizzini et al. [1] |
| Anupama | Callistosporium | Guyanagarika | Macrocybe | Pseudolaccaria | Pulchragaricus | Xerophorus | |
|---|---|---|---|---|---|---|---|
| Anupama | |||||||
| Callistosporium | 0.111 | ||||||
| Guyanagarika | 0.170 | 0.186 | |||||
| Macrocybe | 0.145 | 0.140 | 0.206 | ||||
| Pseudolaccaria | 0.112 | 0.122 | 0.200 | 0.140 | |||
| Pulchragaricus | 0.156 | 0.173 | 0.186 | 0.204 | 0.196 | ||
| Xerophorus | 0.115 | 0.129 | 0.187 | 0.151 | 0.121 | 0.184 |
| Genera | Pileus | Lamellae | Spores | Cystidia |
|---|---|---|---|---|
| Asproinocybe | Convex, gray, brown, red to violet | Adnate, violaceous to violet, changing reddish when injured | Inamyloid, tuberculate to stellate | Absent or cheilocystidia/pleurocystidia |
| Callistosporium | Convex to applanate, yellow, brown to brick red | Emarginate, adnate to adnexed, cream, yellow to vinaceous | Inamyloid, smooth | Absent or cheilocystidia |
| Clitocybe s. str. * | Convex to applanate, white to yellowish brown | Decurrent, white, cream to yellowish | Inamyloid, smooth | Absent |
| Guyanagarika | Convex to plano-convex, orange to dark orange | Adnate to sub-sinuate, pale yellow to orange | Inamyloid, smooth | Absent |
| Leucopaxillus | Convex to slightly depressed, white to ochraceous | Adnate to decurrent, white to pale cream | Amyloid, warts | Absent or cheilocystidia/pleurocystidia |
| Macrocybe | Convex, umbonate to depressed, white, cream to grayish | Sinuate, pale | Inamyloid, smooth | Absent or Pseudocystidia |
| Pseudoclitopilus | Convex to slightly depressed, white | Decurrent, pinkish | Amyloid, warts | Absent |
| Pulchragaricus | Hemispherical to convex, yellowish brown | Emarginate to adnate, pink to pinkish | Inamyloid, smooth | Cheilocystidia |
| Tricholoma | Convex to applanate, white, gray, brown to yellow | Adnexed to emarginate, white, grayish to yellow | Inamyloid, smooth | Absent |
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Jian, S.; Xu, X.; Yang, T.; Gao, F.; Liu, J.; Fang, Y.; Ai, W.; Zhang, C. Pulchragaricus rhodophyllus gen. et sp. nov. (Callistosporiaceae, Agaricales) from Yunnan, China, Based on Morphological and Molecular Data. Life 2026, 16, 899. https://doi.org/10.3390/life16060899
Jian S, Xu X, Yang T, Gao F, Liu J, Fang Y, Ai W, Zhang C. Pulchragaricus rhodophyllus gen. et sp. nov. (Callistosporiaceae, Agaricales) from Yunnan, China, Based on Morphological and Molecular Data. Life. 2026; 16(6):899. https://doi.org/10.3390/life16060899
Chicago/Turabian StyleJian, Sipeng, Xinjing Xu, Tianwei Yang, Feng Gao, Jing Liu, Yiwei Fang, Wenzhu Ai, and Chunxia Zhang. 2026. "Pulchragaricus rhodophyllus gen. et sp. nov. (Callistosporiaceae, Agaricales) from Yunnan, China, Based on Morphological and Molecular Data" Life 16, no. 6: 899. https://doi.org/10.3390/life16060899
APA StyleJian, S., Xu, X., Yang, T., Gao, F., Liu, J., Fang, Y., Ai, W., & Zhang, C. (2026). Pulchragaricus rhodophyllus gen. et sp. nov. (Callistosporiaceae, Agaricales) from Yunnan, China, Based on Morphological and Molecular Data. Life, 16(6), 899. https://doi.org/10.3390/life16060899
