Reconstructing Depositional Environments with Decision Tree Classifier (A Machine Learning Model): A Grain-Size Study of the Tredian Formation, Salt Range, Pakistan
Abstract
1. Introduction
2. General Geology and Stratigraphy
3. Materials and Methods
3.1. Fieldwork
3.2. Paleoflow





3.3. Lithological Logs
3.4. Petrography and Grain Parameters
3.5. Machine Learning Model
4. Results
4.1. Field Data
4.1.1. Sandstone Interbedded with Shale Lithofacies LF-1
4.1.2. Thick-Bedded Sandstone Lithofacies LF-2
4.1.3. Dolomite Lithofacies LF-3
4.2. Petrographic Analysis
4.3. Grain-Size Statistics

4.3.1. Graphic Mean (Mz)
4.3.2. Inclusive Graphic Standard Deviation (σi)
4.3.3. Inclusive Graphic Skewness (Sk1)
4.3.4. Graphic Kurtosis (KG)
4.4. Decision Tree Classifier Model (DTCM)
5. Interpretation and Discussion
5.1. Lithofacies
5.1.1. Sandstone Interbedded with Shale Lithofacies (LF-1)
5.1.2. Thick-Bedded Sandstone Lithofacies (LF-2)
5.1.3. Dolomite Lithofacies (LF-3)
5.2. Machine Learning-Based Grain-Size Statistics
5.3. Linear Discriminant Function (LDF)
6. Depositional Settings
7. Conclusions
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| ML | Machine Learning |
| SOMs | Self-Organizing Maps |
| UVQ–ANN | Unsupervised Vector Quantizer Artificial Neural Network |
| SIS | Sequential Indicator Simulation |
| DTCM | Decision Tree Classifier Model |
| HFTB | Himalayan Fold and Thrust Belt |
| SRT | Salt Range Thrust |
| LF-1 | Sandstone Interbedded with shale lithofacies |
| LF-2 | Thick-Bedded Sandstone Lithofacies |
| LF-3 | Dolomite lithofacies |
| GSP | Geological Survey of Pakistan |
| BKUC | Bacha Khan University, Charsadda |
| NCEG | National Centre of Excellence in Geology |
| Qt | Total Quartz |
| Qmue | Monocrystalline Quartz with unit extinction |
| Qmuu | Monocrystalline Quartz with undulose extinction |
| Qpq(2–3) | Polycrystalline Quartz with 2–3 crystals |
| Qpq>3 | Polycrystalline Quartz with >3 crystals |
| F | Feldspar |
| L | Lithic Fragments |
| LDF | Linear Discriminant Function |
| SE | Southeast |
| NW | Northwest |
| IC | Iron Concretion |
| σi | Standard Deviation |
| Mz | Mean |
| Sk | Skewness |
| K | Kurtosis |
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| Sample ID | Q = Qmue + Qmuu + Qpq(2–3) + Qpq>3 | F | L | Cements | Total | ||||
|---|---|---|---|---|---|---|---|---|---|
| Q | Qmue | Qmuu | Qpq(2–3) | Qpq>3 | |||||
| NT-5 | 405 | 375 | 20 | 5 | 5 | 20 | 5 | 70 | 500 |
| NT-8 | 435 | 390 | 25 | 10 | 10 | 15 | 10 | 40 | 500 |
| NT-11 | 395 | 360 | 20 | 5 | 10 | 20 | 0 | 85 | 500 |
| NT-13 | 424 | 389 | 22 | 7 | 5 | 17 | 3 | 57 | 500 |
| NT-15 | 445 | 390 | 40 | 10 | 5 | 10 | 5 | 40 | 500 |
| NTS-15c | 438 | 396 | 27 | 11 | 4 | 9 | 6 | 47 | 500 |
| NT-16 | 396 | 361 | 21 | 6 | 4 | 23 | 6 | 79 | 500 |
| NT-16c | 411 | 376 | 18 | 6 | 6 | 21 | 6 | 67 | 500 |
| NT-17 | 415 | 355 | 45 | 15 | 5 | 20 | 5 | 55 | 500 |
| NT-18 | 423 | 389 | 27 | 6 | 4 | 17 | 3 | 54 | 500 |
| NT-20 | 387 | 357 | 17 | 3 | 7 | 28 | 8 | 80 | 500 |
| NT-21 | 390 | 365 | 15 | 5 | 5 | 30 | 15 | 65 | 500 |
| NT-23 | 428 | 397 | 26 | 7 | 4 | 17 | 3 | 46 | 500 |
| NT-25 | 365 | 355 | 0 | 5 | 5 | 20 | 10 | 105 | 500 |
| NT-27 | 398 | 362 | 16 | 4 | 7 | 25 | 4 | 82 | 500 |
| NT-30 | 394 | 366 | 14 | 5 | 7 | 23 | 5 | 80 | 500 |
| TZ-3 | 400 | 365 | 20 | 5 | 10 | 10 | 10 | 80 | 500 |
| TZ-4 | 375 | 350 | 10 | 10 | 5 | 30 | 17 | 78 | 500 |
| TZ-6 | 430 | 395 | 25 | 5 | 5 | 25 | 15 | 30 | 500 |
| TZ-8 | 450 | 400 | 35 | 5 | 10 | 15 | 5 | 30 | 500 |
| TZ-11 | 425 | 395 | 20 | 5 | 5 | 10 | 5 | 60 | 500 |
| TZ-13 | 413 | 378 | 18 | 3 | 7 | 13 | 4 | 77 | 500 |
| TZ-14 | 450 | 415 | 15 | 10 | 10 | 10 | 5 | 30 | 500 |
| TZ-15 | 402 | 372 | 16 | 6 | 5 | 22 | 3 | 76 | 500 |
| TZ-20 | 382 | 352 | 18 | 4 | 4 | 24 | 4 | 94 | 500 |
| TZ-27 | 410 | 380 | 15 | 5 | 10 | 45 | 15 | 30 | 500 |
| TZ-28 | 422 | 387 | 19 | 6 | 7 | 27 | 5 | 49 | 500 |
| TZ-30 | 395 | 375 | 5 | 10 | 5 | 5 | 5 | 95 | 500 |
| TZ-33 | 365 | 350 | 0 | 10 | 5 | 18 | 2 | 115 | 500 |
| TZ-34 | 392 | 362 | 16 | 6 | 5 | 22 | 3 | 86 | 500 |
| Average % | 81.8% | 75.18% | 3.87% | 1.5% | 1.3% | 3.78% | 1.6% | 12.5% | 100% |
| Graphic Mean (Mz) | Mz = |
| Inclusive Graph Standard Deviation (σi) | σi = |
| Inclusive Graph Skewness (Ski) | Ski = |
| Graphic Kurtosis (KG) | KG = |
| Phi Standard Deviation | Verbal Sorting |
|---|---|
| <0.35 Ø | Very well sorted |
| 0.35 to 0.50 Ø | Well sorted |
| 0.50 to 0.70 Ø | Moderately well sorted |
| 0.70 to 1.00 Ø | Moderately sorted |
| 1.00 to 2.00 Ø | Poorly sorted |
| 2.00 to 4.00 Ø | Very poorly sorted |
| ˃4.00 Ø | Extremely poorly sorted |
| Calculated Skewness | Verbal Skewness |
|---|---|
| ˃+0.30 | Strongly fine skewed |
| +0.30 to 0.10 | Fine skewed |
| +0.10 to −0.10 | Near symmetrical |
| −0.10 to −0.30 | Coarse skewed |
| <−0.30 | Strongly coarse skewed |
| Calculated Kurtosis | Verbal Kurtosis |
|---|---|
| <0.67 | Very platykurtic |
| 0.67 to 0.90 | Platykurtic |
| 0.90 to 1.11 | Mesokurtic |
| 1.11 to 1.50 | Leptokurtic |
| 1.50 to 3.00 | Very leptokurtic |
| ˃3.00 | Extremely leptokurtic |
| Lithofacies | Description | Interpretation |
|---|---|---|
| Sandstone interbedded with shale lithofacies (LF-1) | Medium-to-thick-bedded sandstone interbedded with black shale; cross-bedding, parallel lamination, ripple marks, both symmetrical and asymmetrical, slumps, and flame structures | Deposition in the distributary channels, delta top/flood plain, |
| Thick-bedded sandstone Lithofacies (LF-2) | Fine-to-medium-thick-bedded sandstone having cross-bedding (planar and trough), load marks, and ripple marks | High fluvial discharge in a channel belt environment during delta progradation |
| Dolomite lithofacies (LF-3) | Brown, yellowish, and medium-bedded dolomite, with a sandy lower part, pure dolomite in the upper part | Deposition in fluctuating shallow depositional conditions |
| Sample ID | Median (Md) | Mean (M) | Sorting (σØ) | Skewness (Sk) | Kurtosis (KG) |
|---|---|---|---|---|---|
| NT-5 | 2.51 | 2.60 | 0.52 | 0.91 | 0.35 |
| NT-8 | 2.80 | 2.93 | 0.79 | 1.74 | 1.14 |
| NT-11 | 2.26 | 2.76 | 0.69 | 2.58 | 0.89 |
| NT-13 | 2.55 | 2.54 | 0.44 | 0.15 | 0.41 |
| NT-15 | 2.53 | 2.85 | 0.82 | 3.07 | 0.92 |
| NT-15c | 2.46 | 2.94 | 0.93 | 4.17 | 1.68 |
| NT-16 | 2.24 | 2.68 | 0.63 | 2.13 | 0.75 |
| NT-16c | 2.30 | 2.45 | 0.34 | 0.76 | 0.75 |
| NT-17 | 2.51 | 2.86 | 0.83 | 3.07 | 0.13 |
| NT-18 | 2.73 | 2.84 | 0.64 | 0.75 | 0.86 |
| NT-20 | 2.83 | 2.88 | 0.70 | 0.97 | 0.81 |
| NT-21 | 2.51 | 2.74 | 0.66 | 1.20 | 0.13 |
| NT-23 | 1.95 | 1.95 | 0.06 | 0.00 | 0.90 |
| NT-25 | 1.35 | 1.36 | 0.10 | 0.02 | 0.01 |
| NT-27 | 1.33 | 1.32 | 0.07 | 0.00 | 0.02 |
| NT-30 | 1.23 | 1.22 | 0.04 | 0.00 | 0.01 |
| TZ-3 | 2.52 | 2.78 | 0.65 | 1.53 | 0.78 |
| TZ-4 | 2.24 | 2.75 | 0.68 | 2.56 | 0.87 |
| TZ-6 | 2.55 | 2.81 | 0.53 | 1.78 | 0.61 |
| TZ-8 | 2.24 | 2.53 | 0.54 | 1.54 | 0.39 |
| TZ-11 | 2.52 | 2.77 | 0.63 | 1.43 | 0.73 |
| TZ-13 | 2.44 | 2.93 | 0.90 | 4.04 | 1.59 |
| TZ-14 | 2.52 | 2.87 | 0.81 | 2.84 | 0.83 |
| TZ-15 | 2.82 | 2.89 | 0.65 | 0.61 | 0.86 |
| TZ-20 | 1.11 | 1.11 | 0.06 | 0.00 | 0.01 |
| TZ-27 | 1.73 | 1.74 | 0.04 | 0.00 | 0.00 |
| TZ-28 | 2.64 | 2.58 | 0.34 | −0.15 | 0.20 |
| TZ-30 | 1.23 | 1.23 | 0.04 | 0.00 | 0.00 |
| TZ-33 | 1.86 | 1.87 | 0.08 | 0.01 | 0.01 |
| TZ-34 | 2.51 | 2.60 | 0.52 | 0.91 | 0.35 |
| Precision Range | Recall Range | Cross-Validation % | Accuracy % | F1-Score Range | |
|---|---|---|---|---|---|
| Standard Deviation vs. Mean | 0.00–1.00 | 0.00–1.00 | 96.67 | 77.8 | 0.00–0.92 |
| Skewness vs. Mean | 0.00–1.00 | 0.00–1.00 | 68 | 57.14 | 0.00–1.00 |
| Kurtosis vs. Mean | 0.00–1.00 | 0.00–1.00 | Not | 66.7 | 0.00–0.86 |
| Standard Deviation vs. Skewness | 0.00–1.00 | 0.00–1.00 | 96 | 85.7 | 0.00–1.00 |
| Kurtosis vs. Skewness | 0.00–1.00 | 0.00–1.00 | 92.67 | 85.7 | 0.00–0.92 |
| Input Parameters | Samples | Predicted Class |
|---|---|---|
| Skewness vs. Mean | NT-23, NT-25, NT-27, NT-30, TZ-20, TZ-27, TZ-28, TZ-30, TZ-33 | Near Symmetrical |
| NT-13 | Fine Skewed | |
| NT-5, NT-8, NT-16, NT-16C, NT-17, NT-18, NT-20, NT-21, TZ-4, TZ-6, TZ-8, TZ-11, TZ-13, TZ-14, TZ-15 | Strongly Fine Skewed | |
| Kurtosis vs. Mean | NT-5, NT-16, NT-16C, NT-21, NT-25, NT-27, NT-30, TZ-6, TZ-8, TZ-20, TZ-27, TZ-28, TZ-30, TZ-33, TZ-34 | Very Platykurtic |
| NT-11, NT-13, NT-17, NT-18, NT-20, NT-23, | Platykurtic | |
| NT-8 | Leptokurtic | |
| TZ-13 | Very Leptokurtic | |
| Standard Deviation vs. Skewness | NT-23, NT-25, NT-27, NT-30, TZ-8, TZ-13, TZ-30, TZ-33, TZ-34 | Very Well Sorted |
| NT-13, NT-16C, TZ-28, | Well Sorted | |
| NT-5, NT-11, NT-18, NT-20, NT-21, TZ-3, TZ-4, TZ-6, TZ-11, TZ-15, | Moderately Well Sorted | |
| NT-8, NT-16, NT-17, TZ-14 | Moderately Sorted |
| Linear Discriminant Function | Environment of Deposition | |||||||
|---|---|---|---|---|---|---|---|---|
| S. No | Y1 | Y2 | Y3 | Y4 | Y1 | Y2 | Y3 | Y4 |
| NT-5 | −9.07 | 81.21 | −8.22 | 9.71 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Turbidity |
| NT-8 | −8.22 | 139.32 | −13.07 | 19.60 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-11 | −10.71 | 137.42 | −15.93 | 23.90 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-13 | −7.38 | 63.08 | −1.71 | 4.93 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| NT-15 | −11.24 | 160.84 | −20.00 | 27.32 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-15c | −10.73 | 209.27 | −27.03 | 38.77 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-16 | −10.22 | 120.35 | −13.09 | 20.10 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-16c | −9.47 | 62.40 | −4.05 | 7.54 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| NT-17 | −11.37 | 161.48 | −20.19 | 26.97 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-18 | −7.68 | 99.57 | −6.34 | 11.22 | Beach/Aeolian | Shallow Marine | Shallow Marine | Fluvial (Deltaic) |
| NT-20 | −10.08 | 97.67 | −8.28 | 9.13 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Turbidity |
| NT-21 | −7.87 | 109.54 | −8.82 | 14.68 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| NT-23 | −6.93 | 30.90 | 0.57 | 1.44 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| NT-25 | −4.79 | 22.48 | 0.22 | 1.19 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| NT-27 | −4.67 | 21.08 | 0.35 | 0.97 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| NT-30 | −1.89 | 33.63 | 0.39 | 5.01 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-3 | −8.85 | 115.14 | −10.37 | 16.75 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-4 | −11.53 | 130.85 | −15.75 | 22.25 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-6 | −11.48 | 101.76 | −10.37 | 15.96 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-8 | −8.86 | 100.26 | −9.34 | 15.92 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-13 | −6.46 | 124.50 | −9.58 | 19.93 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-14 | −13.25 | 187.55 | −26.00 | 33.37 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-15 | −11.01 | 155.50 | −18.81 | 25.47 | Beach/Aeolian | Shallow Marine | Fluvial (Deltaic) | Fluvial (Deltaic) |
| TZ-20 | −9.99 | 84.36 | −5.87 | 6.03 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-27 | −3.92 | 17.58 | 0.29 | 0.81 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-28 | −5.58 | 31.21 | 0.47 | 2.37 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-30 | −8.46 | 45.46 | 0.45 | 0.81 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-33 | −4.35 | 19.55 | 0.34 | 0.94 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
| TZ-34 | −6.69 | 29.93 | 0.42 | 1.43 | Beach/Aeolian | Shallow Marine | Shallow Marine | Turbidity |
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Idrees, M.; Iqbal, S.; Qanit, A.B.; Wagreich, M.; Bibi, M.; Ahmad, M.; Wadood, B. Reconstructing Depositional Environments with Decision Tree Classifier (A Machine Learning Model): A Grain-Size Study of the Tredian Formation, Salt Range, Pakistan. Minerals 2026, 16, 512. https://doi.org/10.3390/min16050512
Idrees M, Iqbal S, Qanit AB, Wagreich M, Bibi M, Ahmad M, Wadood B. Reconstructing Depositional Environments with Decision Tree Classifier (A Machine Learning Model): A Grain-Size Study of the Tredian Formation, Salt Range, Pakistan. Minerals. 2026; 16(5):512. https://doi.org/10.3390/min16050512
Chicago/Turabian StyleIdrees, Muhammad, Shahid Iqbal, Abdul Bari Qanit, Michael Wagreich, Mehwish Bibi, Mansoor Ahmad, and Bilal Wadood. 2026. "Reconstructing Depositional Environments with Decision Tree Classifier (A Machine Learning Model): A Grain-Size Study of the Tredian Formation, Salt Range, Pakistan" Minerals 16, no. 5: 512. https://doi.org/10.3390/min16050512
APA StyleIdrees, M., Iqbal, S., Qanit, A. B., Wagreich, M., Bibi, M., Ahmad, M., & Wadood, B. (2026). Reconstructing Depositional Environments with Decision Tree Classifier (A Machine Learning Model): A Grain-Size Study of the Tredian Formation, Salt Range, Pakistan. Minerals, 16(5), 512. https://doi.org/10.3390/min16050512

