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Open AccessArticle

Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses

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Centro de Investigación en Dinámica Celular, Instituto de Investigación en Ciencias Básicas y Aplicadas, Universidad Autónoma del Estado de Morelos, Cuernavaca, Morelos C.P. 62209, Mexico
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Departamento de Biología, Facultad de Ciencias, Universidad Nacional de San Antonio Abad del Cusco, Cusco C.P. 0800, Peru
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Departamento de Farmacia y Bioquímica, Facultad de Ciencias de la Salud, Universidad Nacional de San Antonio Abad del Cusco, Cusco C.P. 0800, Peru
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Escuela de Postgrado, Universidad Nacional de San Antonio Abad del Cusco, Cusco C.P. 0800, Peru
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Tecnológico Nacional de México, Instituto Tecnológico de Mérida, Mérida, Yucatán C.P. 97000, Mexico
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Instituto de Investigaciones en Matemáticas Aplicadas y en Sistemas, Sede Mérida, Universidad Nacional Autónoma de México, Unidad Académica de Ciencias y Tecnología, Mérida, Yucatán C.P. 97302, Mexico
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Centro de Genómica y Bioinformática, Facultad de Ciencias, Universidad Mayor, Providencia, Santiago C.P. 7500000, Chile
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Authors to whom correspondence should be addressed.
Genes 2019, 10(11), 891; https://doi.org/10.3390/genes10110891
Received: 11 September 2019 / Revised: 15 October 2019 / Accepted: 26 October 2019 / Published: 5 November 2019
(This article belongs to the Special Issue Molecular Genetics and Genomics of Halophilic Microorganisms)
Intermediate-salinity environments are distributed around the world. Here, we present a snapshot characterization of two Peruvian thalassohaline environments at high altitude, Maras and Acos, which provide an excellent opportunity to increase our understanding of these ecosystems. The main goal of this study was to assess the structure and functional diversity of the communities of microorganisms in an intermediate-salinity environment, and we used a metagenomic shotgun approach for this analysis. These Andean hypersaline systems exhibited high bacterial diversity and abundance of the phyla Proteobacteria, Bacteroidetes, Balneolaeota, and Actinobacteria; in contrast, Archaea from the phyla Euryarchaeota, Thaumarchaeota, and Crenarchaeota were identified in low abundance. Acos harbored a more diverse prokaryotic community and a higher number of unique species compared with Maras. In addition, we obtained the draft genomes of two bacteria, Halomonas elongata and Idiomarina loihiensis, as well as the viral genomes of Enterobacteria lambda-like phage and Halomonas elongata-like phage and 27 partial novel viral halophilic genomes. The functional metagenome annotation showed a high abundance of sequences associated with detoxification, DNA repair, cell wall and capsule formation, and nucleotide metabolism; sequences for these functions were overexpressed mainly in bacteria and also in some archaea and viruses. Thus, their metabolic profiles afford a decrease in oxidative stress as well as the assimilation of nitrogen, a critical energy source for survival. Our work represents the first microbial characterization of a community structure in samples collected from Peruvian hypersaline systems. View Full-Text
Keywords: Peruvian Andes; metagenomics; intermediate salinity; microbiome; virus Peruvian Andes; metagenomics; intermediate salinity; microbiome; virus
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Castelán-Sánchez, H.G.; Elorrieta, P.; Romoacca, P.; Liñan-Torres, A.; Sierra, J.L.; Vera, I.; Batista-García, R.A.; Tenorio-Salgado, S.; Lizama-Uc, G.; Pérez-Rueda, E.; Quispe-Ricalde, M.A.; Dávila-Ramos, S. Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses. Genes 2019, 10, 891.

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