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Article

KRAS and BRAF Mutations as Prognostic and Predictive Biomarkers for Standard Chemotherapy Response in Metastatic Colorectal Cancer: A Single Institutional Study

by
Nuria Garcia-Carbonero
1,†,
Javier Martinez-Useros
1,*,†,
Weiyao Li
1,
Alberto Orta
2,
Nuria Perez
3,
Cristina Carames
2,
Tatiana Hernandez
4,
Irene Moreno
5,
Gloria Serrano
6 and
Jesus Garcia-Foncillas
1,2,4,*
1
Translational Oncology Division, OncoHealth Institute, Fundacion Jimenez Diaz University Hospital, Av. Reyes Católicos 2, 28040 Madrid, Spain
2
Oncology Department, OncoHealth Institute, Fundacion Jimenez Diaz University Hospital, Av. Reyes Católicos 2, 28040 Madrid, Spain
3
Pathology Department, Fundacion Jimenez Diaz University Hospital, Av. Reyes Católicos 2, 28040 Madrid, Spain
4
START Madrid-FJD, Hospital Universitario Fundación Jiménez Díaz, Av. de los Reyes Católicos, 2, 28040 Madrid, Spain
5
START Madrid-Hospital HM Sanchinarro, Calle de Oña, 10, 28050 Madrid, Spain
6
Oncology Department, University Hospital Infanta Leonor, Avenida de la Gran Vía del Este, 80, 28031 Madrid; Spain
*
Authors to whom correspondence should be addressed.
†
These authors contributed equally to this work.
Cells 2020, 9(1), 219; https://doi.org/10.3390/cells9010219
Submission received: 12 December 2019 / Revised: 7 January 2020 / Accepted: 11 January 2020 / Published: 15 January 2020
(This article belongs to the Special Issue Role of KRAS Mutations in Colorectal Cancer)
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Abstract

:
KRAS mutation is a confirmed predictive biomarker for anti-EGFR monoclonal antibody therapy response for metastatic colorectal cancer. However, its prognosis impact and the predictive potential for first-line standard chemotherapy remains unclear. On the other hand, V600E mutation is the most frequent and studied mutation in the BRAF gene, and it has been associated with a poor outcome of patients and a low response to anti-EGFR treatment. Thus, the aim of this study is to evaluate the role of KRAS and BRAF mutations as prognosis factors and predictive biomarkers for 1st line standard chemotherapy in metastatic colorectal cancer. KRAS mutations and BRAF V600E mutations exhibited a poor outcome (p = 0.021 and p < 0.0001, respectively). Cox multivariate analysis showed that the presence of liver metastasis (HR = 1.595; 95% CI: 1.086–2.343; p = 0.017), KRAS mutation (HR = 1.643; 95% CI: 1.110–2.431; p = 0.013) and BRAF V600E mutation (HR = 5.861; 95% CI: 2.531–13.570; p < 0.0001) were statistically significant co-variables for progression-free survival. Interestingly, patients with KRAS mutations were associated with a poor response to first line standard chemotherapy (p = 0.008). In contrast, the BRAF V600E mutation did not have any impact on the first line standard chemotherapy response (p = 0.540). Therefore, in the present study, we provide new insight on the role of KRAS and BRAF, not only as prognosis biomarkers, but also as first line standard chemotherapy response biomarkers in metastatic colorectal cancer.

1. Introduction

Colorectal cancer (CRC) is the third most common tumor diagnosed worldwide [1]. The death rate of CRC has dropped by 53% since 1970, primarily due to new advances in early diagnosis and treatment strategies. The 5-year overall survival has increased by 7.9% in patients aged 65–74 years [2]. Nevertheless, it still constitutes the third leading cause of cancer-related death in the United States [1]. Despite the improvement in CRC diagnosis and treatment, approximately 35% of CRC patients show stage IV or metastatic disease (mCRC) at diagnosis, and 20–50% of stage II and III patients will progress to metastatic disease [3]. The most common sites of distant metastases in mCRC are liver (50–60%), lymph nodes (35–40%), lung (10–30%) and peritoneum (5–20%) [4]. Thus, the 5-year survival rate for metastatic disease is around 10–20%; however, it has reached 33% to 50% with conversion therapy [5,6], which implies an increase in overall survival benefit from 12 months to 30 months over the last 20 years [7].
First-line standard treatment for mCRC patients is still a challenging issue for oncologists. Recommendations include different combinations of drugs, and doublet chemotherapeutic regimens are considered the best standard of care for mCRC. First-line chemotherapy options include fluoropyrimidine-based agents plus leucovorin and oxaliplatin (FOLFOX), or irinotecan (FOLFIRI) or capecitabine plus oxaliplatin [8].
About 60–80% of CRC shows EGFR overexpression. This fact allows the use of biologic treatments based on monoclonal antibodies (mAbs) against this receptor, which block ligand binding and inhibit the MAPK signaling pathway [9]. KRAS mutations negatively predict response to these inhibitors [10], and anti-VEGFR (vascular endothelial growth factor) therapies are recommended in the presence of these mutations [11]. The combination of standard chemotherapy and biologic treatment has significantly improved the outcome of mCRC patients in first- and second-line treatment [12,13]. Therefore, testing KRAS status is recommended in routine clinical practice for better patient management [14]. BRAF V600E mutation also appears to predict the lack of benefit from anti-EGFR mAbs, and it has also been considered a biomarker of poor prognosis and resistance to standard therapies [15,16,17]. Unfortunately, mCRC patients treated with these antibodies progress and develop resistance in most cases [18]. If the disease progresses, one should administer different cytotoxic drugs in order to avoid chemotherapy resistance [19,20].
KRAS is a factor that belongs to the GTPase RAS superfamily and triggers crucial signaling cascades, such as the RAF-MEK-ERK (MAPK) kinase cascade or PIK3CA-AKT-mTOR axis. These pathways are involved in cell growth, proliferation, differentiation or survival, and they perform a key role in tumorigenesis when they are aberrantly activated [21]. For these reasons, KRAS is considered one of the most important players in human cancers. Activating mutations in KRAS have been described in 90% of pancreatic tumors, 35% of lung cancers and 30–50% of CRCs [22]. KRAS mutations are found in codons 12 or 13 of exon 2 in the 90% of CRCs, especially in the phosphate-binding loop of the protein. It has been suggested that mutations at codon 12 are involved in local invasion and metastasis, whereas mutations at codon 13 could be more related to adenoma–carcinoma transition [23]. As activating KRAS mutations are major events that drive tumorigenesis in many types of tumors, it is currently one of the most important targets for drug development.
On the other hand, BRAF encodes a cytoplasmic serine–threonine kinase that acts immediately downstream of KRAS in the MAPK signaling pathway. Its aberrant activation enhances cell proliferation and survival and it is critical for tumorigenesis in many types of tumors [24]. Over 90% of activating BRAF mutations in CRC are due to a change in the nucleotide 1799 of the exon 15, which causes a thymine to adenine change, leading to a substitution of valine by glutamate. This mutation is known as BRAF V600E mutation [25], and has been found in 100% of hairy cell leukaemias [26], in approximately 50% of melanomas [27], in 50% of papillary thyroid cancers [28,29] or in 1–3% of non-small cell lung carcinomas [30,31]. In mCRC the incidence of BRAF mutations is less than 10% [15,32]; however, BRAF V600E mutation is considered a relevant therapeutic target for mCRC management. It has been described that KRAS and BRAF mutations are mutually exclusive in CRC, as though they are functionally redundant or incompatible, and cells with both mutations are erased [33,34]. Nevertheless, a recent study has described concomitant KRAS and BRAF mutations in CRC [35].
The role of KRAS and BRAF mutations in CRC survival and response to standard chemotherapy regimens is still controversial. Some studies support their potential application as prognosis biomarkers in CRC management [36,37,38], whereas other studies are not conclusive [39,40]. Regarding standard chemotherapy response, their potential use as predictive biomarkers is not well-established. Some articles have suggested a potential role of these mutations in standard chemotherapy response [41,42], while others have refused it [17,43]. Recently, a novel role of tumor location in the outcome of patients has been described. A more favourable outcome in left tumors than right tumors in wild-type KRAS CRC patients has been described [44,45].
As there is a lack of consensus in the scientific community about the role of KRAS and BRAF mutations as prognosis and predictive biomarkers for standard chemotherapy response, in this study we evaluated these mutations in a cohort of 561 patients with mCRC to provide new insights in regards to this.

2. Materials and Methods

2.1. Patients

A total of 792 patients with metastasic colorectal cancer who were diagnosed between 1984 and 2012 at the Oncology Department of the Fundacion Jimenez Diaz Hospital were assessed for eligibility. Mutational status from 217 patients could not be determined, and clinical and pathological data from 14 patients were not available; then, a total of 561 patients were included in the study. Among them, 308 patients presented progression-free survival (PFS) information, and 278 patients had complete clinical information on their chemotherapy response (Figure 1). Patients received standard chemotherapy according to standard oncology guidelines, and treatment response was evaluated following the RECIST criteria.

2.2. Mutational Analysis

KRAS and BRAF mutational status was performed in the Pathology Department of Fundacion Jimenez Diaz Hospital. For this, DNA was extracted with a DNA Sample Preparation Kit (Roche Diagnostics, Mannheim, Germany) according to the manufacturer’s instructions. KRAS mutational status of each sample was determined by Real-Time PCR with a cobas® KRAS Mutation Test (Roche Diagnostics). BRAF V600E mutation testing was performed by cobas® BRAF mutation test IVD (Roche Diagnostics).

2.3. Statistical Analysis

KRAS and BRAF mutational status were used as categorical variables. KRAS mutations in codons 12, 13 or 61 were considered as a positive KRAS mutation. BRAF mutational status was analysed as the presence or absence of a V600E mutation. Patients that achieved complete response (CR) or partial response (PR) were categorized as responders, whereas those that exhibited stable disease (SD) or progression on disease (PD) were considered non-responders. Progression-free survival was defined as the time between the dates of diagnosis and recurrence or last follow-up.
The association between KRAS mutations or BRAF V600E mutation with clinicopathological features of patients and treatment response was analysed with Chi-square test or two-tailed Fisher’s exact test. We performed survival curves for KRAS or BRAF mutations with Kaplan Meier, and statistical analysis was assessed with the log-rank test. The Cox univariate proportional hazards model was used to compare progression-free survival hazard ratios and 95% confidence intervals of BRAF and KRAS mutations with other clinical and pathological characteristics. Cox multivariate analysis was performed with those statistically significant covariates obtained from univariate analysis. p ≤ 0.05 was considered statistically significant. Statistical analysis was performed with the IBM SPSS program, version 20.0.

2.4. Ethics Statement

Clinical samples used in the study were kindly supplied from the BioBank of the Fundacion Jimenez Diaz-Universidad Autonoma de Madrid (PT13/0010/0012 and RD09/0076/00101). This study has been evaluated by the Ethical Review Board of the Health Research Institute of Fundacion Jimenez Diaz (act number 17/14). All patients gave written informed consent for the use of their biological samples for research purposes. Moreover, fundamental ethical principles promoted by Spain (LOPD 15/1999) and the European Union Fundamental Rights of the EU (2000/C364/01) were followed. In addition, all patients´ data were processed according to the Declaration of Helsinki (last revision 2013) and Spanish National Biomedical Research Law (14/2007, of 3 July).

3. Results

3.1. Patients Characteristics

From our institutional cohort of 792 mCRC patients, a total of 561 mCRC patients with available data of KRAS mutations and/or BRAF V600E mutations were included in the study. The median age of patients was 68 years (range 24–93 years) and most patients were male (60.1%). Among the overall population, 395 patients (70.4%) had primary tumor localization in the descending colon (left colon, sigma or rectum), whereas 158 (28.2%) were localized in the ascending colon (cecum, right colon or transverse colon). Of them, 323 patients (57.6%) presented with synchronous metastasis. Tumors cells were differentiation grade I (well-differentiated) in 15.3% of cases, 67.9% were grade II (moderately differentiated), and 9.5% grade III (poorly differentiated). Performance status (ECOG) was ≥2 in 23.9% of cases. Regarding metastatic foci, 153 patients (27.3%) showed metastasis in more than one site, while 394 of patients (70.2%) exhibited metastasis in only one site. Liver metastases were found in most of the patients (66.8%), followed by lung metastases (33.3%), or peritoneal metastases (24.2%). Furthermore, 24.4% of patients had lymph node involvement. In our study, we found that KRAS and BRAF mutations were mutually exclusive. Mutations in KRAS codons 12/13 were found in 46.2% of patients, whereas mutations in codon 61 were only detected in 3.4% of the cases. BRAF was mutated in 6.1% of patients. The overview of the clinico-pathological features of our institutional cohort of patients is given in Table 1.
Then, we aimed to verify whether KRAS or BRAF mutational status was associated with any of the clinical and pathological characteristics of the patients. In this study, the ECOG number was the only variable that was statistically associated with KRAS mutations (p = 0.005). BRAF V600E mutation presented a significant association with primary tumor located on the right colon (p < 0.0001), with synchronic disease (p = 0.019), and with peritoneal metastasis (p = 0.002), and showed a high trend towards significance with moderately and poorly differentiated tumors (differentiation grades 2 and 3, p = 0.098) (Table 2). These results suggest a potential implication of KRAS and BRAF mutations in the tumorigenesis of mCRC.

3.2. Patients That Received Biologic Treatment Showed a Better Outcome and Treatment Response

It is widely known that biologic treatment improves survival of patients; therefore, we assessed this association. In this study, cetuximab (anti-EGFR mAB) or bevacizumab (anti-VEGFR mAb) were administered to mCRC patients as biologic treatments depending on the KRAS mutational status of tumors. We confirmed that patients that received standard chemotherapy alone showed a worse outcome (p = 0.028) than those who received chemotherapy plus biologic treatment (Figure S1). Furthermore, the ratio of recurrence was higher in patients who did not receive biologic treatment (73%) compared to combination therapy (55%) (p = 0.002) (Table S1). The predictive role of KRAS and BRAF mutations in biologic therapies response is well understood and applied by oncologist worldwide in the clinical management of mCRC. For this reason, we focused on the association between KRAS and BRAF mutations and standard chemotherapy response in order to elucidate not only the prognosis potential of KRAS and BRAFV600E mutations but also their predictive role for standard chemotherapy response.

3.3. KRAS and BRAF Mutations Have An Impact on Progression-Free Survival of Patients

KRAS and BRAF mutational status was available in 195 and 203 cases, respectively, of the total number of patients who did not receive biologic treatment. KRASBRAFKRAS mutations were detected in 103/195 patients (53%). KRAS mutations were significantly associated with progression-free survival (p = 0.021) (Figure 2A). The median PFS was 28 months (95% CI: 22.206–33.794 months) for KRAS wild-type patients while patients with KRAS mutations has a PFS of 19 months (95% CI: 15.678–22.322 months). Concerning BRAF analysis, we found a mutation in BRAF in only 11 cases (5%). Despite the scarce number of patients with this alteration, BRAFV600E mutation was associated with PFS (p < 0.0001; Figure 2B). Here, patients with BRAF wild-type presented with longer median progression-free survival (median = 24 months, 95% CI: 18.678–29.322 months) in comparison to BRAF mutated patients (median = 9 months, 95% CI: 5.167–12.833 months). Therefore, these results confirm the implication of KRAS and BRAF mutations on patient prognosis.
Cox proportional hazards model for progression-free survival was performed to compare the prognostic potential of KRAS and BRAFV600E mutational status with the other clinico-pathological characteristics included in the study. Here, the univariate analysis revealed that patients with mutations in KRAS present higher risk of recurrence than wild-type patients (HR = 1.529, 95% CI: 1.058–2.211, p = 0.024). Moreover, BRAF mutated patients also showed higher risk of progression than BRAF wild-type (HR = 4.288, 95% CI: 2.033–9.046, p < 0.0001). We have also found a statistically significant association between PFS and the presence of liver metastasis (HR = 1.691, 95%CI: 1.177–2.432, p = 0.005). Interestingly, after multivariate analysis, these three factors remained statistically significant, not only BRAF (HR = 5.861, 95%CI: 2.531–13.570, p < 0.0001), but also KRAS (HR = 1.643, 95%CI: 1.110–2.431, p = 0.013) and liver metastasis (HR = 1.595, 95% CI: 1.086–2.343, p = 0.017) (Table 3). These results confirm the prognostic value of KRAS and BRAFV600E mutations for the adequate management of mCRC patients in routine clinical practice.

3.4. KRAS Mutation Status is Associated with a Lack of Benefit From Standard Chemotherapy

In regards to treatment regimens, a total of 278 mCRC patients were treated with standard chemotherapy as first line therapy. Among them, 97 patients were excluded from the study as they received biologic treatment regimens based on anti-EGFR or anti-VEGFR monoclonal antibodies. As a result, a total number of 170 patients with KRAS mutational status and 177 patients with BRAF mutational status were included in the study to assess the association between standard chemotherapy response and KRAS or BRAF mutation status (Figure 1). Among the KRAS mutated subgroup, 75/93 (81%) patients presented with stable disease or progression to standard chemotherapy compared to 48/93 (62%) patients with KRAS wild-type. Furthermore, only 19% of patients with a KRAS mutation achieved complete or partial response to treatment, while double the number of patients with KRAS wild-type (38%) showed complete or partial response (p = 0.008) (Table 4). In contrast, BRAF mutation did not show a clear association with treatment response, where 73% of patients with BRAF wild-type presented with disease recurrence compared to 78% of the BRAF mutated subgroup (p = 0.540) (Table 4). Overall, these results support the role of KRAS mutational status as a predictive biomarker not only for biologic treatment but also for standard chemotherapy response.

4. Discussion

Personalized medicine is based on the premise that patients can be stratified into subgroups according to predictive biomarkers in order to be treated with target therapies [46]. The use of monoclonal antibodies against EGFR or VEGFR in the management of mCRC has represented a substantial improvement in the outcome of these patients [47]. As a result, most mCRC patients nowadays receive biologic treatment as first-line therapy. In this study, we have observed in our cohort of patients that the combination of biologic therapy plus standard chemotherapeutic agents presents a benefit both in outcome of patients and treatment response compared to the use of standard chemotherapy alone, which goes in accordance with previous studies.
KRAS and BRAF mutation status is broadly used in the routine clinical practice for the diagnosis and treatment management in the field of CRC. KRAS mutation is considered a key point for treatment decisions in oncology as it can predict resistance to monoclonal antibodies against epidermal growth factor receptor (EGFR) [48], restricting the use of these therapies to KRAS wild-type CRC patients [10]. BRAF mutations also confer resistance to anti-EGFR therapies in patients with mCRC [49,50]. Biologic treatment is predominantly administered in combination with standard chemotherapy to mCRC patients. The current selection of standard chemotherapeutic treatment strategies is mostly based on the patients characteristics and the clinical, pathological and molecular features of tumors [51,52]. As there are not useful predictive biomarkers to select chemotherapeutic strategies for mCRC, it is necessary to identify new molecular markers to predict standard chemotherapy response.
Several studies have tried to elucidate the role of KRAS and BRAF mutations in cytotoxic drugs response, but the impact of the mutational status on the effectiveness of standard chemotherapy remains unclear. Furthermore, most of these studies include a low number of patients, which limits their statistical power. Lin et al. suggested KRAS mutation as a predictor of oxaliplatin sensitivity in vitro by downregulation of ERCC1 [53]. Indeed, a benefit of oxaliplatin-based chemotherapy for KRAS mutated mCRC patients has been reported [41]. A recent study suggests that patients with mutations in KRAS codon 12 present a significant survival advantage compared to wild-type patients treated with irinotecan-based therapy [54]. However, other studies reported that mutation status of KRAS did not impact on irinotecan or oxaliplatin response [17,55]. Other studies reported a lack of benefit from chemotherapy for those KRAS mutated mCRC patients [43,56]. Cui et al. reported in a meta-analysis that patients with BRAF mutations showed worse objective response rates than wild-type patients treated with standard chemotherapy [42]. Other studies suggested that the predictive role of BRAF mutations is not significant in standard chemotherapy response [17,57]. Therefore, there is an absence of evidence to conclude that KRAS or BRAF mutated patients are less likely to obtain a benefit from standard chemotherapeutic strategies.
In our study, we provide new insight on the role of KRAS and BRAF mutations, focused on the prediction of response to adjuvant standard chemotherapy alone based mainly on oxaliplatin, irinotecan and fluoropyrimidines. Moreover, the fact that all patients have been treated at a single institution makes this study highly homogeneous. Here, we have observed that KRAS mutations can predict resistance to standard chemotherapy (p = 0.008). Thus, patients showed stable disease or relapse in 81% (N = 75) of cases with KRAS mutation, compared to 62% (N = 48) of KRAS wild-type patients. Unfortunately, we could not stratify our cohort of patients regarding the specific chemotherapeutic agents used because of the low number of cases in some of the subgroups.
The use of biologic treatment could influence the prognosis impact of KRAS and BRAF mutations in the outcome of patients. Indeed, the role of KRAS as a prognostic biomarker in CRC is still rather controversial. KRAS mutations have been associated with a worse prognosis in several reports [58,59,60,61]. However, there are other several articles that have failed to show a role of KRAS mutations in the outcome of patients [62,63,64,65]. For this reason, we aimed to analyse the prognostic potential of KRAS and BRAF mutations in a subset of patients that did not receive biologic therapy along the study period and only received standard chemotherapy as first-line treatment.
Here, we provide evidence on the impact of KRAS mutations on the time to progression of patients. Nevertheless, it would be interesting to analyse the role of the specific mutations in the KRAS gene. For instance, Jones et al. found that different mutations in KRAS codon 12 have different impacts on survival, especially G12C and G12V, which remained significant among the five most common mutations [58]. The poorer prognosis role of these specific mutations in KRAS was in codon 12, which was confirmed recently by different authors [66,67]. Mutations in codon 146 are also found in mCRC patients but at a low frequency [68,69]. Nevertheless, their role in mCRC prognosis and treatment response is still unknown due to the limited statistical power of these analyses, and large-scale trials are needed [70]. The role of KRAS mutation status in other types of tumors has also been studied, e.g., KRAS mutation is a poor prognostic factor and erlotinib or gefitinib resistance biomarker in non-small cell lung cancer [71,72].
The BRAF mutation was also significantly associated with poor outcome in our cohort of patients. Indeed, Cox proportional hazards model confirmed the association between shorter progression-free survival and KRAS mutation, BRAF mutation and the presence of liver metastasis than other clinicopathological variables. This worst prognosis impact is consistent with previous publications about mCRC [37,73,74,75]. Furthermore, the BRAF V600E mutation has also been associated with a reduced survival in other types of tumors like melanoma [76] or papillary thyroid cancer [77].
In addition, we have found an association between KRAS or BRAF mutation status and the differentiation grade of tumors, which suggests a role of these activating mutations in tumor development and progression. KRAS mutation was also associated with a higher performance status. Interestingly, most patients with a BRAF mutation (N = 26, 76%) also exhibited synchronic metastatic disease. This observation suggests that BRAF V600E mutation is an early event that contributes to tumorigenesis of mCRC. Indeed, the BRAF mutation was positively associated with the presence of peritoneal metastases (p = 0.002), and revealed a high trend towards significance with lymph node affection (p = 0.054); however, it is unlikely to be associated with lung metastases (p = 0.200). These results go in accordance to those of Tran el al. regarding localization of metastases. These authors reported 46% vs. 24% for peritoneal metastasis when comparing BRAF mutated vs. BRAF wild-type respectively, 53% vs. 38% for lymph nodes metastases, and 35% vs. 49% for lung metastasis [37]. In our cohort, 47% of BRAF mutated patients showed peritoneal metastases vs. 23% BRAF wild-type patients, 38% show lymph nodes metastases vs. 24%, and 24% vs. 34% show lung metastases respectively. In both studies, BRAF mutated patients are more likely to present with peritoneal metastases and lymph node affection, and the BRAF mutation does not seem to confer tropism to lungs. It has also been reported that BRAF wild-type tumors are usually localized in the left side of the colon, while BRAF mutations are associated with the right side of the colon [78,79]. In our cohort, 75% of BRAF wild-type tumors were localised in the left colon, whereas 79% of BRAF mutated tumors were found predominantly in the right side, which goes in accordance with the literature. Therefore, these results contribute to the understanding of the role of the BRAF mutation in mCRC management, where BRAF is providing new treatment strategies based on molecular targeted therapy [80].

5. Conclusions

Most published articles analyse the impact of KRAS and BRAF mutations in mCRC patients that received standard chemotherapy in combination with biologic treatment. Moreover, their prognostic potential is rather controversial. In the present study, we have provided new insights into the roles of KRAS and BRAF mutations, and we propose their use as prognostic and predictive biomarkers for standard chemotherapy response in the mCRC scenario.

Supplementary Materials

The following are available online at https://www.mdpi.com/2073-4409/9/1/219/s1, Figure S1: Patient treated with biologic therapy presented longer progression-free survival, Table S1: Treatment response of patients that received standard chemotherapeutic alone vs. standard chemotherapy plus biologic treatment.

Author Contributions

Conceptualization: N.G.-C., J.M.-U. and J.G.-F.; methodology: N.P.; formal analysis: N.G.-C.; investigation: J.M.-U., W.L., N.G.-C.; CRC patients data base: C.C., T.H., I.M. and G.S.; data curation: J.M.-U., N.G.-C.; writing—original draft preparation: J.M.-U., N.G.-C.; review and editing: A.O.; visualization: N.G.-C; supervision: J.M.-U. and J.G.-F.; project administration: J.M.-U.; funding acquisition: J.G.-F. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by the RNA-Reg Consolider-Consortium (CSD2009-00080), and by Spanish Health Research Project Funds (PI16/01468) from Instituto de Salud Carlos III-FEDER (J.G.-F.), both of the Spanish Ministry of Economy, Industry, and Competitiveness.

Acknowledgments

We thank Oliver Shaw (FIIS-FJD) for editing the manuscript for English usage, clarity, and style.

Conflicts of Interest

The authors declare no conflict of interest.

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Cells 09 00219 g001 550
Figure 1. Flow chart presenting the number of patients in progression-free survival and chemotherapy response analyses performed in the study. N: number of patients.
Figure 1. Flow chart presenting the number of patients in progression-free survival and chemotherapy response analyses performed in the study. N: number of patients.
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Figure 2. KRAS or BRAF mutations confer poor prognosis to mCRC patients. Kaplan Meier curves of progression-free survival of mCRC patients, (A) with KRAS mutations versus KRAS wild-type, and (B) with BRAFV600E mutations versus BRAF wild-type. Statistical analysis performed with log-rank test. N: number of patients; PFS: progression-free survival; wt: wild-type; mut: mutated; P: p-Value.
Figure 2. KRAS or BRAF mutations confer poor prognosis to mCRC patients. Kaplan Meier curves of progression-free survival of mCRC patients, (A) with KRAS mutations versus KRAS wild-type, and (B) with BRAFV600E mutations versus BRAF wild-type. Statistical analysis performed with log-rank test. N: number of patients; PFS: progression-free survival; wt: wild-type; mut: mutated; P: p-Value.
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Table
Table 1. Clinico-pathological characteristics of CRC patients from our institutional set included in the study.
Table 1. Clinico-pathological characteristics of CRC patients from our institutional set included in the study.
CharacteristicsN (%)CharacteristicsN (%)
Median age (range)68 years (24–93)1st line treatment response
Gender  CR or PR94 (16.8%)
 Female224 (39.9%) SD or PD186 (33.2%)
 Male337 (60.1%) N/A281 (50.0%)
Localization of primary tumor Number of metastatic sites
 Right colon158 (28.2%) 1394 (70.2%)
 Left colon395 (70.4%) >1153 (27.3%)
 N/A8 (1.4%) N/A14 (2.5%)
Metastatic pattern Liver metastasis
 Metachronous237 (42.2%) No185 (33.0%)
 Synchronous323 (57.6%) Yes375 (66.8%)
 N/A1 (0.2%) N/A1 (0.2%)
Differentiation grade Lung metastasis
 G186 (15.3%) No372 (66.3%)
 G2381 (67.9%) Yes187 (33.3%)
 G353 (9.5%) N/A2 (0.4%)
 N/A41 (7.3%)Lymph nodes metastasis
ECOG  No423 (75.4%)
 0 167 (29.8%) Yes137 (24.4%)
 1 248 (44.2%) N/A1 (0.2%)
 2 88 (15.7%)Peritoneal metastasis
 3 46 (8.2%) No424 (75.6%)
 N/A12 (2.1%) Yes136 (24.2%)
Metastatic 1st backbone  N/A1 (0.2%)
 Oxaliplatin-based163 (29.1%)KRAS mutational status
 Irinotecan-based74 (13.2%) Wild-type254 (45.3%)
 Fluoropyrimidines70 (12.5%) Mutated in 12/13259 (46.2%)
 Other12 (2.1%) Mutated in 6119 (3.4%)
 None242 (43.1%) N/A29 (5.1%)
Metastatic 1st biologic BRAF mutational status
 None458 (81.6%) Wild-type519 (92.5%)
 Cetuximab39 (7.0%) V600E Mutated 34 (6.1%)
 Bevacizumab64 (11.4%) N/A8 (1.4%)
N: number of patients; CR: complete response; PR: partial response; SD: stable disease; PD: progressive disease; ECOG: Eastern Cooperative Oncology Group performance status scale; N/A: not available.
Table
Table 2. Statistical association between KRAS and BRAF mutational status with clinico-pathological features of the patients.
Table 2. Statistical association between KRAS and BRAF mutational status with clinico-pathological features of the patients.
Clinico-Pathological
Feature		KRAS
Wt		KRAS
Mut		p-ValueBRAF
Wt		BRAF
Mut		p-Value
Age (median, range)67.0 (27–93)69.0 (24–90) 68.5 (24–93)63.5 (33–85)
Gender 0.123 0.610
 Male161 (63%)158 (57%) 313 (60%)19 (56%)
 Female93 (37%)120 (43%) 206 (40%)15 (44%)
Tumor location 0.179 0.000
 Right colon65 (26%)84 (31%) 130 (25%)27 (79%)
 Left colon188 (74%)187 (69%) 381 (75%)7 (21%)
Metastatic disease 0.763 0.019
 Metachronous104 (41%)117 (42%) 228 (44%)8 (24%)
 Synchronous150 (59%)160 (58%) 290 (56%)26 (76%)
Grade 0.113 0.098
 G131 (13%)49 (19%) 83 (17%)2 (7%)
 G2 + G3199 (87%)212 (81%) 400 (83%)28 (93%)
ECOG 0.005 0.771
 0/1205 (82%)193 (71%) 384 (76%)25 (74%)
 2/345 (18%)77 (29%) 123 (24%)9 (26%)
Liver metastasis 0.105 0.161
 No91 (36%)81 (29%) 168 (32%)15 (44%)
 Yes163 (64%)196 (71%) 350 (68%)19 (56%)
Lung metastasis 0.400 0.200
 No171 (68%)179 (64%) 340 (66%)26 (76%)
 Yes81 (32%)99 (36%) 177 (34%)8 (24%)
Lymph nodes metastasis 0.897 0.054
 No194 (76%)210 (76%) 396 (76%)21 (62%)
 Yes60 (24%)67 (24%) 122 (24%)13 (38%)
Peritoneal metastasis 0.446 0.002
 No190 (75%)215 (78%) 399 (77%)18 (53%)
 Yes64 (25%)62 (22%) 119 (23%)16 (47%)
Number of metastatic sites 0.564 0.483
 1180 (73%)192 (71%) 366 (72%)22 (67%)
 >167 (27%)80 (29%) 140 (28%)11 (33%)
N: number of patients; ECOG: Eastern Cooperative Oncology Group as performance status scale; wt: wild-type; mut: mutated.
Table
Table 3. Uni- and multivariate proportional hazard model of KRAS and BRAF, and other clinico-pathological variables in the progression-free survival of mCRC patients.
Table 3. Uni- and multivariate proportional hazard model of KRAS and BRAF, and other clinico-pathological variables in the progression-free survival of mCRC patients.
Univariate PFS (95%CI)
HRLowerUpperp-Value
Age (< vs. >68 years)1.1370.8021.6120.470
Gender (Female vs. Male)1.1660.8201.6590.393
Localization (Right colon vs. Left colon)1.2450.8401.8440.275
Grade 0.757
G11.000
G20.8590.3112.3700.769
G31.0560.4282.6030.906
ECOG (0/1 vs. 2/3)1.3310.7752.2840.300
Metastatic 1st backbone 0.301
Oxaliplatin-based1.000
Irinotecan-based0.9140.6151.3600.659
Fluoropyrimidines1.2950.8182.0510.269
Liver metastasis (No vs. Yes)1.6911.1772.4320.005
Lung metastasis (No vs. Yes)1.3200.9241.8870.128
Lymph nodes metastasis (No vs. Yes)1.1780.8091.7160.393
Peritoneal metastasis (No vs. Yes)1.3330.8921.9910.161
Number of metastasis sites (1 vs. >1)1.3870.9312.0670.108
KRASmutation (No vs. Yes)1.5291.0582.2110.024
BRAFmutation (No vs. Yes)4.2882.0339.0460.000
Multivariate PFS (95% CI)
Liver metastasis (No vs. Yes)1.5951.0862.3430.017
KRASmutation (No vs. Yes)1.6431.1102.4310.013
BRAFmutation (No vs. Yes)5.8612.53113.5700.000
PFS: progression-free survival; HR: hazard ratio; CI: confidence interval; vs: versus; ECOG: Eastern Cooperative Oncology Group performance status scale.
Table
Table 4. Statistical association between KRAS and BRAF mutational status and treatment response to standard chemotherapy.
Table 4. Statistical association between KRAS and BRAF mutational status and treatment response to standard chemotherapy.
CR + PRSD + PDp-Value
KRAS wild-type29 (38%)48 (62%)
KRAS mutated18 (19%)75 (81%)
0.008
BRAF wild-type46 (27%)122 (73%)
BRAF mutated2 (22%)7 (78%)
0.540
CR: complete response; PR: partial response; SD: stable disease; PD: progressive disease.

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MDPI and ACS Style

Garcia-Carbonero, N.; Martinez-Useros, J.; Li, W.; Orta, A.; Perez, N.; Carames, C.; Hernandez, T.; Moreno, I.; Serrano, G.; Garcia-Foncillas, J. KRAS and BRAF Mutations as Prognostic and Predictive Biomarkers for Standard Chemotherapy Response in Metastatic Colorectal Cancer: A Single Institutional Study. Cells 2020, 9, 219. https://doi.org/10.3390/cells9010219

AMA Style

Garcia-Carbonero N, Martinez-Useros J, Li W, Orta A, Perez N, Carames C, Hernandez T, Moreno I, Serrano G, Garcia-Foncillas J. KRAS and BRAF Mutations as Prognostic and Predictive Biomarkers for Standard Chemotherapy Response in Metastatic Colorectal Cancer: A Single Institutional Study. Cells. 2020; 9(1):219. https://doi.org/10.3390/cells9010219

Chicago/Turabian Style

Garcia-Carbonero, Nuria, Javier Martinez-Useros, Weiyao Li, Alberto Orta, Nuria Perez, Cristina Carames, Tatiana Hernandez, Irene Moreno, Gloria Serrano, and Jesus Garcia-Foncillas. 2020. "KRAS and BRAF Mutations as Prognostic and Predictive Biomarkers for Standard Chemotherapy Response in Metastatic Colorectal Cancer: A Single Institutional Study" Cells 9, no. 1: 219. https://doi.org/10.3390/cells9010219

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