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Article

Combining Ability of Maize Landraces for Yield and Basic Chemical Composition of Grain

by
Aleksandar Popović
1,*,
Vojka Babić
1,
Zoran Čamdžija
1,
Srboljub Živanov
1,
Dragana Branković-Radojčić
1,
Jelena Golijan Pantović
2 and
Vesna Perić
1
1
Maize Research Institute Zemun Polje, Slobodana Bajića 1, 11185 Belgrade, Serbia
2
Faculty of Agriculture, University of Belgrade, Nemanjina 6, 11080 Belgrade, Serbia
*
Author to whom correspondence should be addressed.
Agronomy 2025, 15(5), 1012; https://doi.org/10.3390/agronomy15051012
Submission received: 11 February 2025 / Revised: 11 April 2025 / Accepted: 11 April 2025 / Published: 23 April 2025
(This article belongs to the Section Crop Breeding and Genetics)

Abstract

:
The launch of a successful quality-oriented breeding program requires both mining the residual diversity in grain quality parameters contained in the elite, high-yielding breeding material with good agronomic performance and introgression of new germplasm, such as local landraces, with a high level of targeted quality parameters per se. This study analyzed the combining abilities of 31 maize landraces and two divergent inbred lines–testers (ZPL217 and ZPL-255/75-5) regarding the yield and protein, starch, and lipid content, assessed by Near Infrared Reflectance (NIR) spectroscopy as a fast, non-destructive, and cost-effective method. The general combining ability (GCA) defines the average behavior of genotype in hybrid combination, resulting from additive gene action, so positive GCA values of landraces AN13 and AN197 for protein, AN632 for lipids, and AN594 for starch content indicate that they can be valuable sources of the mentioned properties in quality-oriented maize breeding programs. The obtained correlation between starch content and protein and yield (−0.948 **; 0.587 **) pointed out that an increase in the protein content during breeding will be accompanied by a decrease in the starch content and yield. The specific combining ability (SCA) of the testers used, suggests their possible application in establishing and improving quality breeding programs’ initial material.

1. Introduction

Maize (Zea mays L.) is a highly polymorphic species that encompasses a wide cultivation area. High adaptability and yield potential, along with its diverse applications, contribute to its status as a dominant crop in various countries [1]. Commercial maize breeding programs are often based on a narrow genetic foundation, utilizing elite inbred lines as parental components in various hybrids, aiming to achieve optimal agronomic performance in a short time frame. In the race for profit, the nutritional value of the grain is often overlooked, particularly regarding its use in human nutrition [2]. Compared with commercial hybrids, landraces are usually richer in protein and lipid content as well as in molecules with a role as antioxidants [3].
Recent trends underscore the importance of healthy diets enriched with nutritional values for both human and animal nutrition [4]. This trend directs plant breeding toward the development of varieties with improved grain quality. The importance of enhancing grain quality is recognized in the context of its utility in industrial processing, human nutrition, and livestock feeding. An international network (EVA maize) involving European genebanks, research institutes, and breeders is currently studying traditional European landraces to explore their variability and their possible exploitation as pre-breeding materials [5].
Various quantitative genetic approaches have been applied so far to genetically improve grain quality [6]. Successful genetic approaches include recurrent selection, incorporation of exotic germplasm, and the use of mutants [7,8,9]. Identifying important traits and the genes that define them is crucial for the rapid advancement of selection and the creation of hybrids rich in nutritional value. Research by Vaz Patto et al. [10] on local maize landraces (open-pollinated variety) in Portugal showed that higher quality populations (with increased protein content, lower amylose content, and lower viscosity) are utilized to produce flour for traditional dishes [11].
The standard quality maize grain contains approximately 90 g kg−1 protein, 40 g kg−1 oil, 730 g kg−1 starch, and 140 g kg−1 other components, primarily fiber [12]. The distribution of nutrients within the grain is such that oil is predominantly found in the germ, while starch and proteins are concentrated in the endosperm. Analyzing the composition of maize grain, Cook et al. [13] observed variations in protein content (ranging from 12.3% to 15.3%), oil (from 3.5% to 5.5%), and starch (from 62.3% to 69.6%), indicating a need for a more detailed understanding of the genetic differences among selected genotypes for these three traits.
Redaelli et al. [3] highlighted the importance of germplasm characterization in promoting the recovery and valorization of local biodiversity and also pointed out the important role of ex situ conservation in maintaining the allelic richness of crop species for future breeding programs. When selecting initial breeding material, special attention is paid to adaptation to local growing conditions, and a high level of desirable traits allows for more efficient breeding of superior lines [14]. An initial population with a high value for the selected trait enables fewer cycles of selection to achieve the desired trait level within that population. Genetic diversity estimates help to structure germplasm defining, for example, heterotic pools, and provide useful information to select opposite parental lines for new breeding populations [15]. The value of the initial population represents a crucial factor in the selection process, whose final product in the form of hybrids not only derives from inherent traits but also depends on the ability to combine with other populations, groups of populations, or lines. Opposite parents during hybridization contribute to the complex dynamics of genetic material and the final expression of phenotypic characteristics [16]. Furthermore, a good combinator is not necessarily the final step in selection, as besides good combining abilities, the genotype must also contain other desirable characteristics [17].
The concept of combining ability (CA) reflects a parent’s potential to produce superior offspring when crossed with another parent and is crucial for the development of high-yielding hybrids. Combining abilities fall into two categories: general combining ability (GCA) and specific combining ability (SCA) [18]. Information on combining ability and heterosis is imperative in a genetic improvement program to develop hybrids or synthetic varieties [19]. The GCA defines the average behavior of a line in its hybrid combinations, and SCA evaluates hybrid combinations with respect to the average behavior of the lines. GCA results from additive gene action, while SCA depends on dominance, predominate, and epistasis [20]. The development of high-yielding hybrids necessitates the careful selection of parents based on their combining ability and genetic structure [21]. A positive aspect of Line × Tester analysis [22,23] is the ability to assess inbred lines and populations crossed with good GCA testers, with or without the parents themselves included in the trial, thus providing the opportunity to test a greater volume at once. Although combining abilities have predominantly been used for GCA/SCA calculations for yield, such practices have also found their place in non-yield purposes, such as nutritive compounds [24,25,26,27].
Modern analytical methods for measuring the nutritional values of maize seeds bring significant changes by eliminating the need for large quantities of seeds and destructive approaches. Notably, Near Infrared Reflectance (NIR) spectroscopy stands out, as its technique allows for the measurement of starch, protein, and lipid content in whole maize grains without disrupting their structure [28]. Numerous studies highlight the significant predictive power of NIR spectroscopy, achieved through reflective mode and analysis of grain composition based on calibration curves [29,30].
This study aims to investigate the general (GCA) and specific combining abilities (SCA) of 31 maize landraces crossed with two testers, ZPL217 and ZPL-255/75-5, each representing different heterotic backgrounds while focusing on the basic chemical composition of grain, specifically protein, starch, and lipids, as well as yield. The results of these studies can be utilized for selecting initial material in the development of maize hybrids with enhanced basic chemical composition of the grain.

2. Materials and Methods

2.1. Plant Material

Thirty-one local maize landraces were used in this study, being previously selected through a stratified process within pre-breeding activities as a suitable initial material for bordering Maize Research Institute Zemun Polje (MRIZP), Belgrade - Republic of Serbia commercial breeding germplasm pools [1]. Landraces are a part of the MRIZP Gene Bank collection. The selected landraces (Table 1) were crossed in technical isolation with two MRIZP divergent testers, ZPL217 and ZPL-255/75-5, which are part of different heterotic groups (Iowa Dent and Lancaster). Those are two widely used commercial testers in commercial MRIZP breeding programs and are components of a large number of realized hybrids (Table 2). A total of 62 test cross hybrids (maize landrace × tester) were developed for the study.

2.2. Field Experiment

This experiment was conducted during the 2022 and 2023 growing seasons, with two replications at four locations in Serbia: Zemun Polje, Pančevo, Sremska Mitrovica, and Bečej (Table 3). A total of 62 test cross hybrids (maize landrace × tester) have been tested. The elementary plots were 5 m long, with an inter-row spacing of 75 cm, covering a total area of 7.5 m2. Standard agronomic practices were followed at all locations, including soil preparation, fertilization, and pest management.
The experiment was set up using a partially balanced incomplete block design (PBIB) [32]. The locations used in the experiment belong to the Pannonian 3 (PAN3) zone as defined by European Environmental Stratification [33]. The last meter of each row was designated for chain pollination to produce seed needed for NIR analysis [34], while the final 6 m2 were reserved for grain yield assessment. Seeding and harvesting were performed using Wintersteiger equipment, Ried im Innkreis (Innviertel region), Austria (Dual Dynamic Disc Seeder and Split Plot Harvester) at a density of 66,667 plants ha–1, with yield adjusted to 14% moisture content. Main soil characteristics and standard cropping practices applied are presented in Table 4.
Although the experiment was initially planned at four locations, the Sremska Mitrovica site from the 2023 growing season was excluded from the analysis due to severe storm damage. Consequently, seven external environments were considered for statistical analysis. The combined ANOVA included the effects of the environment, as well as the interactions of GCA and SCA with the environment.

2.3. Chemical Composition Analysis

The analysis of the basic chemical composition of the grain was conducted using the Infraneo spectrometer from Chopin Technologies, KPM Analytics (Manufacturing headquarters for Chopin Technologies), Paris, France. This spectrometer employs near infrared radiation in the range of 710 to 1100 nm, specifically designed for transmission analysis of solid products. With a high monochromator resolution of 0.1 nm, it effectively measures absorption through greater thicknesses, making it suitable for heterogeneous samples such as maize grains. This method provides rapid determination of protein, starch, and lipid content in maize grains. According to Paulsen et al. [35], NIR spectroscopy provides rapid analysis and measures starch content, where the content indicates the amount of starch present in the grain. Calibration of NIR spectroscopy is performed using a calibration set consisting of samples with known chemical composition. Reference values of the calibration set generated by standard laboratory methods, such as the Kjeldahl method for proteins, the polarimetric method for starch, and Soxhlet extraction for lipids, were used to develop calibration models by applying the Partial Least Squares Regression (PLSR) method, enabling the prediction of composition based on spectral data. The bias of the calibration curve is expressed as the difference between the arithmetic means of the laboratory and NIR measurements. The slope of the linear regression and the bias calibration curve were tested by t-test. Calibration is conducted by correlating sample spectra with laboratory-determined values, after which the model is validated using an independent set of samples [29]. Validation includes statistical parameters such as the coefficient of determination (R2), root mean square error of calibration (RMSEC), root mean square error of prediction (RMSEP), and bias, which determine the accuracy and precision of the model.

2.4. Statistical Analysis

General and specific combining abilities (GCA/SCA) were calculated using the AGD-R software (Analysis of Genetic Designs in R for Windows) Version 5.1 (3 August 2022) [36]. The “line by tester analysis” design was applied. The effects of maize landraces (GCA for landraces), testers (GCA for testers), and their interaction (SCA) were treated as fixed, whereas the effects of replications, environment, and their interactions with GCA and SCA were considered random.
The applied statistical model used to perform the Line × Tester analysis within the multi-environment RCBD framework is as follows:
Y i j k = µ + E d + R E P k E d + l i + t j + l i × t j + E d × l i + E d × t j + E d × l i × t j + e i j k
where
Y i j k is the observed value;
µ is the general mean;
E d is the environmental effect d = 1 ,   2 ,   , s ;
R E P k E d is the effect of replicate k nested in environment d k = 1 ,   2 , , r ;
l i is the line effect i = 1 , 2 , , m ;
t j is the tester effect j = 1 ,   2 ,   , f ;
e i j k is the residual.

3. Results

The analysis of general combining ability (GCA) and specific combining ability (SCA) revealed promising maize landraces for specific nutritional quality traits.

3.1. General Combining Ability (GCA)

For protein content, two GCA combiners, Accession Number (AN) AN13 and AN197, were significantly positive at the 0.05 probability level, with values of 0.54 * (9.95%) and 0.47 * (9.88%), respectively. For lipids, AN632 was the only highly significant positive GCA combiner among the 31 landraces, with a value of 0.28 ** (4.38%). The only significant positive GCA value for starch was discovered for the landrace AN594, with a value of 1.25 * and a starch content of 70.39%. Landrace AN13 exhibited the lowest GCA value of −1.27 ** (67.87%), indicating antagonistic effects and suggesting potential breeding directions for these traits. For grain yield, AN1267 was identified as the best GCA combiner, with a value of 0.87 * and an average yield of 8.20 t ha–1 (Table 5).
Tester ZPL217 exhibited a positive GCA for protein 0.03 (9.44%) and starch content 0.04 (69.18%). In contrast, tester ZPL-255/75-5 was identified as a positive GCA combiner for lipids 0.19 (4.30%) but exhibited negative GCA values for starch and proteins. The tester L217, belonging to the Iowa Dent heterotic pool, demonstrated a positive GCA for grain yield (0.35) (7.69 t ha−1) compared to tester ZPL-255/75-5, which has a Lancaster heterotic background (Table 6).
Highly significant effects on protein, starch, lipid, and yield were observed for the factors of location, genotype, and the interaction between the environment and tester. Specifically, the effect of the tester was highly significant only for lipid and yield, whereas no significant effect was found for protein and starch content. Furthermore, it was noted that all factors had a highly significant effect on lipid content, while the tester factor was statistically non-significant for starch. The interaction Site × Line × Tester had a significant effect on yield variation but no effect on the variation in protein, starch, or lipid content. Other interactions, such as Site × Genotypes and Site × Line, showed significant effects on all traits, but specific interactions were not significant for all traits.
The relative importance of additive (GCA) and non-additive (SCA) gene action indicated a greater contribution of GCA for all investigated traits. The proportion of variance explained by GCA for protein, starch, and lipid content was consistently high, ranging from 82.24% to 84.27%, suggesting that these traits are primarily governed by additive genetic effects. In contrast, the proportion of GCA for grain yield was lower (64.89%), with a relatively higher contribution of SCA (35.11%), indicating a greater influence of non-additive genetic effects on this trait. This suggests that grain yield is more affected by dominance and epistatic interactions, making hybrid performance less predictable based solely on parental GCA values (Table 7).

3.2. Specific Combining Ability (SCA)

SCA values indicated that the test hybrid AN877 × ZPL-255/75-5 was the most significantly positive combination for protein content, with an SCA value of 0.19 * and a protein content of 9.30% (Table 8). This result was obtained by crossing two parents with negative GCA values, where AN877 had a GCA of −0.27 (9.14%) (Table 5), while the tester line ZPL-255/75-5 had a GCA of −0.03 (9.36%) (Table 6).
For starch, the best SCA combinations were AN877 × ZPL217 and AN2036 × ZPL-255/75-5, with SCA values of 0.60 ** and 0.52 *, and starch contents of 70.73% and 69.56%, respectively (Table 8). The first of these combinations involved two positive GCA combiners, with AN877 being the second-best GCA combiner with a value of 0.95 (70.09%), though just below the threshold for significance. The second combination, AN2036 × ZPL-255/75-5 (Table 8), was a cross between two negative GCA combiners, with values of −0.06 (69.08%) (Table 5) and −0.04 (69.10%) (Table 6), respectively.
Regarding lipids, AN1890 × ZPL-217 and AN13 × ZPL217 exhibited the most significant SCA values of 0.14 ** (4.04%) and 0.11 * (4.11%), respectively (Table 8). These results were obtained by crossing one negative (AN1890; −0.02) and one positive (AN13; 0.09) GCA combiner with the negative ZPL217 tester −0.19 (3.91%) (Table 6).
While AN1890 × ZPL217 stood out as a top SCA combination, the remaining top ten hybrids were largely derived from crosses between opposite GCA combinations, pointing to a clear direction for maize breeding aimed at improving lipid content. Interestingly, the highest lipid content hybrids in the top ten were all obtained by crossing positive GCA combiners with the tester ZPL217.
For grain yield, the most significant and the only SCA combination was AN13 × ZPL-255/75-5, with an SCA value of 0.84 ** (7.05 t ha−1) (Table 8), resulting from a cross between two negative GCA combiners, AN13 −0.78 (6.56 t ha−1) (Table 5) and ZPL-255/75-5 −0.35 (6.99 t ha−1) (Table 6). This combination produced an average grain yield of 7.34 t ha–1. The highest-yielding hybrid, AN1267 × ZPL217, resulted from a cross between two positive GCA combiners, and while its SCA value was just 0.24, the average yield reached 8.80 t ha–1 (Table 8).
The highest grain-yielding combinations included the top eight hybrids: AN1267 × ZPL217 (8.80 t ha−1), AN1346 × ZPL217 (8.45 t ha−1), AN197 × ZPL217 (8.44 t ha−1), AN1276 × ZPL217 (8.41 t ha−1), AN594 × ZPL217 (8.34 t ha−1), AN2036 × ZPL217 (8.30 t ha−1), AN877 × ZPL217 (8.25 t ha−1), and AN2144 × ZPL217 (8.13 t ha−1). These hybrids consistently involved two positive GCA combiners, with ZPL217 as the common tester across all combinations. These findings are consistent with previous studies, such as those by Singh et al. [22], who demonstrated that hybrids derived from parents with high GCA effects exhibit superior grain yield. Similarly, Muluneh et al. [37] reported that the combination of two positive GCA parents significantly enhanced grain yield performance across diverse environments. Our results, which highlight the role of ZPL217 as a common tester contributing to higher yields, further support the hypothesis that hybrids formed by two positive GCA combiners, particularly when paired with well-adapted testers, achieve significantly higher grain yields.
For protein content, the top eight hybrids with the highest protein percentages were as follows: AN13 × ZPL217 (10.10%), AN13 × ZPL-255/75-5 (9.80%), AN197 × ZPL-255/75-5 (9.97%), AN197 × ZPL217 (9.79%), AN1534 × ZPL217 (9.87%), AN1534 × ZPL-255/75-5 (9.69%), AN467 × ZPL217 (9.77%), AN467 × ZPL-255/75-5 (9.76%), and AN2047 × ZPL217. Each of these combinations contained either two positive GCA combiners or one negative and one positive GCA combiner, emphasizing the critical role of positive GCA combiners in enhancing protein content.
This trend was also observed among the top 24 hybrids, which predominantly consisted of crosses between positive and negative GCA combiners. Hybrids involving two negative GCA combiners, such as AN1895 × ZPL-255/75-5, were ranked from 25th place onward, further underscoring the importance of selecting positive GCA combiners for improving protein content in maize breeding.
The relationships among basic chemical composition traits (proteins, starch, and lipids) and their interdependence with a key agronomic trait (yield) were examined to provide insights into potential trade-offs and synergies in maize breeding programs (Table 9).
A very strong negative correlation was observed between protein and starch content (r = −0.948; p < 0.01) as well as between protein content and grain yield (r = −0.718; p < 0.01). Conversely, a moderate positive correlation was identified between starch content and grain yield (r = 0.587; p < 0.01). Correlations between other traits, including proteins and lipids, as well as lipids and grain yield, were not statistically significant.

4. Discussion

In this study, we investigated the combining ability of 31 local maize landraces, focusing on the basic chemical composition of the kernels, including protein, starch, and lipid content, as well as yield. Improving the nutritional value of maize kernels is of great importance. Research by Jiang et al. [38] confirmed the equivalence of results obtained by Near Infrared Reflectance (NIR) spectroscopy and traditional wet chemical methods for protein, starch, and lipid content. The NIR spectroscopy for the analysis of nutritional components in whole maize kernels has been confirmed as a rapid and efficient method, consistent with the findings of previous studies [29,30]. Unfortunately, quality parameters are often negatively correlated with yield. Therefore, breeding efforts must find a balance between improving nutritional value and minimizing yield loss [12]. General (GCA) and specific (SCA) combining abilities play a crucial role in selecting breeding material and developing hybrids with desirable characteristics [39]. Prai-anun et al. [27] state that understanding the GCA and SCA effects between inbred lines is critical to optimizing heterosis in hybrid-based biofortification breeding, both for yield-related traits and carotenoids. It is essential to identify germplasm with high-yielding potential that simultaneously exhibits high levels of protein, starch, and lipids. Moreover, these landraces must possess good combining abilities for the aforementioned traits.
Combining ability analysis can estimate the relative importance and modes of gene action involved in the commercial hybrids to desired traits [26]. Dodiya and Joshi [40] emphasized the dominant role of non-additive genetic components in the inheritance of oil and protein content. However, the results of our study demonstrate that additive effects had a more significant impact, particularly in the AN13 population for protein content. This discrepancy may be attributed to the different genotypes used in the studies, as well as the specific agroecological conditions in the PAN3 zone.
Identification of local landraces, such as AN13 and AN197, highlights the importance of ex situ genetic resources for increasing protein content in hybrid combinations. Genebanks store representative germplasm samples of crop species and provide access to these materials for their evaluation and integration into modern breeding programs [3], but a deep characterization is required to be able to exploit available agrobiodiversity. AN13, as a positive GCA combiner for protein, has the potential to improve the nutritional profile of hybrids. Through inheritance mechanisms and gene expression, this landrace contributes to increased protein synthesis in the offspring, achieving the desired effect of higher protein content in the final product. Simultaneously, the identified landraces, AN13 and AN197, as positive GCA combiners for protein content, show a significant impact on decreasing starch content. Huang et al. [41] reported QTL on chromosome 9 (THP9) that encodes asparagine synthetase 4 enzyme, for high protein in teosinte. They also state that the introgression of this QTL into modern maize inbreds and hybrids will enhance the accumulation of free amino acids, especially asparagine, without affecting yield. Future research could therefore be directed toward the identification of QTLs responsible for increased protein synthesis in selected landraces and their introgression into elite breeding germplasm.
A strong negative correlation between protein and starch content (−0.948 **) was observed, indicating that increases in protein content occur at the expense of starch and vice versa. This finding underscores the complex interplay between these two components and aligns with the physiological and biochemical constraints governing their accumulation in maize grain. The negative correlation between protein content and grain yield (−0.718 **) suggests that selecting for higher protein content could adversely affect yield, posing a challenge for breeding programs aiming to optimize both traits. These results are consistent with previous findings by Semenčenko et al. [42] and Zhang et al. [43], which similarly reported a trade-off between protein content and grain yield. While protein content shows a trade-off with yield, starch content displays a complementary relationship.
Kumar et al. [44] also found that both additive and non-additive gene effects were significant for oil content, with crosses exhibiting high SCA effects showing elevated heterotic values. The following research [27] supports the idea that both genetic components play essential roles in maize breeding programs focused on the basic chemical composition of grain and yield.
High starch content is particularly important for both the starch industry and food production. In this context, the local landrace AN594 stands out as a positive GCA combiner for starch content. This landrace can be valuable for developing breeding material aimed at optimizing maize for industrial purposes, including starch and bioethanol production [42]. Also, intra-population recurrent selection is inevitable, using trait indices, to increase targeted traits due to the observed larger additive genetic variance for starch, oil, and protein content in maize grain [45,46]. Lipids are primarily localized in the germ, while starch is found in the endosperm, which aligns with the literature data [47]. The local landrace AN632 stands out as a positive GCA combiner for lipids, offering the potential for breeding with increased lipid content. The local landrace AN1267 was identified as the best GCA combiner for yield, highlighting the importance of this genotype in achieving high yields.
A positive correlation between starch content and yield (0.587 **) was also identified, suggesting the potential for developing breeding material that combines high yield with high starch content. Furthermore, a negative correlation between starch and lipid content (−0.368) was observed, indicating that varieties with higher starch content typically have lower lipid levels. The observed correlations between chemical composition traits and grain yield provide important insights for maize breeding strategies. The strong negative correlation between protein and starch content (r = −0.948, p < 0.01) suggests a potential trade-off between these two components, meaning that selection for higher protein content may reduce starch content, which could negatively impact yield. Likewise, the negative correlation between protein content and yield (r = −0.718, p < 0.01) indicates that increasing protein content might result in a decrease in yield, highlighting the need for careful balancing in breeding programs. On the other hand, the positive correlation between starch content and yield (r = 0.587, p < 0.01) indicates that selecting higher starch content could contribute to increased grain yield. These findings emphasize the importance of considering trade-offs and synergies between traits when making selection decisions in maize breeding programs.
Our findings demonstrated that the environment, genotype, and their interaction with the tester significantly affect the amount of protein, oil, and starch, although the tester’s influence is only very significant for the amount of oil. It supports the findings of Ben Mariem et al. [48], who contended that, depending on certain circumstances and genotypes, environmental interactions can have a substantial impact on protein content. In line with our findings, the same authors noted that genotype interactions and environmental factors are important in determining yield potential, particularly in a variety of environmental settings.
Carena [49] reported that parents with high GCA values always produce hybrids with high SCA estimates. Conversely, Ivy and Hawlader [50] found that good general combining parents do not always exhibit high SCA effects in their hybrids. These differing viewpoints underline the complexity of hybrid performance and the importance of both GCA and SCA effects in selection strategies. Our study concurs with the findings of Joshi et al. [51] and Meseka et al. [52], who similarly identified superior parental lines and hybrids based on GCA and SCA effects. Specifically, we observed that GCA effects were more prominent for protein content, highlighting the importance of additive genetic components in the inheritance of this trait.
The difference between the grain yield results of the best SCA combination (AN13 × ZPL-255/75-5) and the combination between the best GCA combiners (AN1267 × ZPL217) can be explained by the fact that SCA indicates a specific interaction between parental lines in a particular cross, while GCA represents the general ability of parents to contribute to desired traits in all combinations. AN13 × ZPL-255/75-5 is the best specific combinator for yield because this combination produces an exceptionally good result in this cross, whereas AN1267 × ZPL217, as a general combinator, demonstrates consistently high yield across different combinations due to its positive GCA values. This is a common situation in plant breeding, where GCA and SCA can lead to different conclusions about the best parents in the best hybrids. Arellano-Vázquez et al. [20] stated that the performance of the maize hybrids was mainly determined by the genetic effects of dominance, epistasis, or interaction when the effects of SCA predominate, and the best way to investigate them is through hybridization.
The significance of both additive and non-additive effects in controlling key agronomic traits, such as protein, starch, and lipid content, as well as yield potential, underscores the necessity for a balanced breeding approach. This approach strategically combines additive and non-additive effects to optimize both quality and yield, addressing the trade-offs between these traits. It emphasizes the improvement of qualitative traits while not affecting grain yield as the ultimate trait. Both additive and non-additive genetic effects also played significant roles in the expression of quality [27] and yield-related traits [26] in maize.
The results of this study provide valuable guidelines for breeding programs aimed at developing genotypes with improved grain quality within the agroecological zone PAN3. The landraces AN13, AN197, AN632, and AN594, with positive GCA values for protein, lipids, and starch content, can be recommended as good sources of these traits for maize breeding programs for temperate climate regions. Information about the SCA of the testers used can be good guidelines for the mentioned landraces’ agronomic properties improvement while simultaneously preserving their heterotic pattern.

5. Conclusions

To further improve maize breeding strategies, a combination of conventional breeding techniques and marker-assisted selection (MAS) is recommended. The identification of QTLs associated with protein, starch, and lipid content could enable a more precise selection of superior genotypes, accelerating the development of hybrids with enhanced nutritional profiles. Additionally, breeding efforts should prioritize the integration of landraces with high GCA values, such as AN13, AN197, and AN632, into hybrid development programs to maximize both yield and grain quality.
The positive correlation between starch content and yield further underscores the potential for optimizing both yield and nutritional traits through careful selection of parent lines. The inbred lines ZPL217 and ZPL-255/75-5 showed distinct advantages, with ZPL217 contributing to higher protein and starch contents and ZPL-255/75-5 excelling in yield and lipid content. The inclusion of these maize lines in breeding programs aimed at improving grain quality would be highly beneficial.
NIR spectroscopy is a fast, non-destructive, and cost-effective tool for the evaluation of the basic chemical composition of maize grains. Its use in the early generations of maize line development to choose genotypes with better grain quality can significantly speed up and streamline the process of breeding maize for quality, making it a valuable method for modern breeding programs. The findings from this study contribute to the ongoing effort to enhance maize’s nutritional value, which is crucial not only for human consumption but also for animal feed and industrial use.
Future research should explore the genetic basis of these traits to deepen our understanding of how maize landraces interact with testers at the molecular level, paving the way for more efficient breeding strategies that align with both high yields and enhanced grain quality.

Author Contributions

Conceptualization, A.P., V.B. and Z.Č.; methodology, A.P., Z.Č., V.B. and V.P.; software, Z.Č.; validation, V.B. and Z.Č.; formal analysis, A.P. and Z.Č.; investigation, A.P., V.B., Z.Č., D.B.-R. and J.G.P.; resources, V.B. and A.P.; data curation, A.P.; writing—original draft preparation, A.P. and Z.Č.; writing—review and editing, V.B., V.P., D.B.-R. and J.G.P.; visualization, S.Ž. and V.P.; supervision, J.G.P.; project administration, Z.Č.; funding acquisition, Z.Č. All authors have read and agreed to the published version of the manuscript.

Funding

This research received no external funding.

Data Availability Statement

Data are contained within the article.

Acknowledgments

This work was supported by the Ministry of Science, Technological Development and Innovation, Republic of Serbia (Grant No. 451-03-136/2025-03/200040).

Conflicts of Interest

The authors declare no conflicts of interest related to this article.

Abbreviations

The following abbreviations are used in this manuscript:
ANAccession Number
CACombining ability
GCAGeneral combining ability
SCASpecific combining ability
AGD-RAnalysis of Genetic Designs in R for Windows; software Version 5.1
NIRNear Infrared Reflectance; spectroscopy

References

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Table 1. The per se values of the yield and basic chemical composition of grain for exanimated landraces.
Table 1. The per se values of the yield and basic chemical composition of grain for exanimated landraces.
No.Accession NumberDomestic NameCountry of OriginProtein (%)Starch (%)Lipid (%)Yield 1
(t ha−1)
11890Domaći kukuruzHR11.60664.7033.5374.27
22144Domaći kukuruzHR11.10266.6273.3993.41
3467Žuti tvrdunacBA12.07563.8183.8953.68
41960Domaći crveniBA10.77566.9833.3864.84
513Žuti jarikME12.16664.9924.2073.14
61895Domaći kukuruzHR11.31165.5903.3785.14
71267Belo semeME11.18165.3634.1144.53
81276Selarsko semeME11.36565.3873.5434.97
9773Žuti osmakRS10.00769.4493.8184.23
101384Domaći kukuruzBA10.84167.3903.3153.99
11594Crvena pčenkaMK11.19968.2752.6423.04
12871Brzica skorovno semeMK11.82264.9033.6293.55
13846Žuti polutvrdunacBA12.47064.5303.4363.35
14642Žuti osmakRS11.70364.7113.6434.29
151798Žuti tvrdunac—vragatiRS10.89966.4193.7065.36
162033Domaći kukuruzHR11.05466.5723.3595.47
172006Domaći tvrdunacBA12.06863.6603.6215.48
182036BosanacBA11.16265.3863.6225.98
191945Domaći tvrdunac—žutiBA11.26865.8173.2354.45
201346Srednje belo semeME9.479068.5284.3295.88
211665Žuti zubanMK11.15366.0513.3225.79
221509AvguštanaSI10.48966.5964.0606.92
231534Domaći beliRS11.56465.7513.6475.44
242249MuratovačaBA10.43468.0763.2717.74
252047Domaći kukuruzHR11.24465.5943.5864.69
261450Domaći kukuruzHR10.58867.2853.5165.73
27632Žuti zubanRS10.22467.6374.4395.34
28877ČađoBA11.59066.2042.8535.36
29197Brdska zobankaSI11.62264.3443.9244.65
30288Žuti zubanRS11.49465.1983.4685.23
311569ZobačkaSI10.60266.9934.1175.92
HR—Croatia, MK—North Macedonia, RS—Serbia, ME—Montenegro, BA—Bosnia and Herzegovina, SI—Slovenia. 1 The more details about the landraces can be found in the manuscripts of Popović et al. [1,31].
Table 2. Mean values of basic nutritional parameters of maize inbred testers.
Table 2. Mean values of basic nutritional parameters of maize inbred testers.
TestersProtein (%)Starch (%)Lipid (%)Yield 1 (t ha−1)
ZPL21712.2965.072.683.20
ZPL-255/75-511.6466.413.132.96
1 The data for yield were already published in [31].
Table 3. Geographic coordinates and elevation of experimental locations.
Table 3. Geographic coordinates and elevation of experimental locations.
LocationLatitudeLongitudeAltitude (m)
Zemun PoljeN44°51′E20°18′73
PančevoN44°88′E20°77′78
Sremska MitrovicaN45°02′E19°64′88
BečejN45°69′E19°91′80
Table 4. Main soil characteristics and cropping practices applied.
Table 4. Main soil characteristics and cropping practices applied.
Soil PropertiesZemun PoljePančevoSremska MitrovicaBečej
pH in H2O7.437.597.797.86
pH in KCl6.967.027.087.08
Total N (%)0.240.210.280.31
P2O5 (mg/100 g)14.5312.2018.8922.15
K2O (mg/100 g)30.2623.9531.9233.12
Organic matter (%)3.893.684.124.43
Soil TypeSlightly calcareous chernozemSilty chernozemCalcareous chernozemHumus-accumulative chernozem
Humus-accumulative horizonProfile: Ah-AhC-C
TillageDeep tillage (at 30 cm in the autumn) and pre-sowing soil preparation (in the spring)
Fertilization120 kg ha−1 of NPK (10:52:0) in the autumn
280–300 kg ha−1 of urea in the spring before sowing
Weed controlPre-emergence application with terbuthylazine and S-metolachlor
Post-emergence application with nicosulfuron and mesotrion
Table 5. Mean performance, GCA values, and rank of maize landraces for protein, starch, lipid content, and grain yield.
Table 5. Mean performance, GCA values, and rank of maize landraces for protein, starch, lipid content, and grain yield.
Accession NumberProteinStarchLipidGrain Yield
Line MeanGCARankLine MeanGCARankLine MeanGCARankLine MeanGCARank
AN 18959.38−0.021569.260.12154.03−0.08247.430.0912
AN 12679.27−0.142169.150.01194.310.2028.200.87 *1
AN12769.490.081068.70−0.44254.220.1157.660.328
AN 7739.25−0.162569.540.3974.100.00167.25−0.0921
AN13849.27−0.142369.550.4163.92−0.19307.350.0114
AN 5949.05−0.363170.391.25 *13.92−0.19297.530.1910
AN 8719.28−0.132069.480.3484.130.03127.32−0.0215
AN 8469.520.12968.64−0.50264.130.02136.99−0.3527
AN 6429.610.20668.84−0.30244.05−0.05227.29−0.0519
AN 17989.600.19768.88−0.26224.03−0.08237.710.377
AN 20339.31−0.101869.360.22134.02−0.08257.14−0.2024
AN 20069.620.21568.63−0.51274.190.0986.95−0.3928
AN 20369.420.021269.08−0.06204.170.06107.940.603
AN 19459.26−0.142469.660.5233.98−0.13287.400.0613
AN 13469.20−0.212769.450.30104.270.1637.950.622
AN 16659.32−0.091769.470.3394.07−0.03187.640.309
AN 18909.24−0.172669.430.29114.09−0.02176.08−1.26 **31
AN 15099.11−0.293069.570.4354.230.1347.770.435
AN 15349.780.38368.32−0.82284.06−0.04217.01−0.3326
AN 22499.15−0.262869.610.4744.01−0.10267.30−0.0416
AN 20479.590.18868.87−0.27234.07−0.04197.25−0.0820
AN 14509.410.011469.190.05174.140.03117.17−0.1622
AN 6329.27−0.142269.160.02184.380.28 *17.08−0.2625
AN 8779.14−0.272970.090.9523.88−0.23317.730.396
AN 1979.880.47 *268.08−1.07304.110.01157.820.484
AN 2889.420.021369.07−0.07214.120.01147.29−0.0518
AN 21449.430.031169.230.09164.00−0.11277.480.1411
AN 15699.34−0.071669.270.13144.210.1067.30−0.0417
AN 4679.760.36468.15−0.99294.190.0996.76−0.5829
AN 19609.28−0.131969.380.24124.06−0.04207.14−0.2023
AN 139.950.54 *167.87−1.27 *314.200.0976.56−0.7830
Grand Mean9.41 69.14 4.11 7.34
Standard Error0.22 0.55 0.11 0.42
* p < 0.05; ** p < 0.01.
Table 6. General combining ability (GCA) values, mean performance, and basic chemical composition and grain yield for testers.
Table 6. General combining ability (GCA) values, mean performance, and basic chemical composition and grain yield for testers.
SourceBasic Chemical Composition of GrainGrain Yield
(t ha−1)
Protein (%)Starch (%)Lipid (%)
Tester1 T2 T1 T2 T2 T1 T1 T2 T
Tester Mean9.449.3869.1869.104.303.917.696.99
Grand Mean9.4169.144.117.34
GCA Value0.03−0.030.04−0.040.19−0.190.35−0.35
Standard Error0.030.040.190.35
p = 0.3559 > 0.05; 1 T—ZPL217; 2 T—ZPL-255/75-5.
Table 7. Line × Tester analysis across environments for grain chemical composition and grain yield.
Table 7. Line × Tester analysis across environments for grain chemical composition and grain yield.
SourcedfSum Sq
ProteinStarchLipidGrain Yield
ENVIRONMENT (E)6197.12 **383.04 **35.07 **2504.39 **
REP (E)737.39 **86.35 **4.05 **5.21 **
GENOTYPE (G)6152.27 **311.01 **45.82 **350.13 **
LINE (L)3043.28 **261.12 **11.25 **155.71 **
TESTER (T)10.701.1431.91**108.21 **
L × T308.2948.75 **2.66 **86.22 **
E × G36695.66 *408.10 **18.59 **615.30
E × L18041.28206.76 **10.98 **206.44
E × T617.30 **31.23 **2.47 **65.60 **
E × L × T18037.09170.115.14343.26*
Residuals42791.52357.0715.38631.17
% GCA SS 83.9384.2782.2464.89
% SCA SS 16.0715.7317.7635.11
* p < 0.05; ** p < 0.01.
Table 8. SCA values for protein, starch, lipids, and grain yield in Line × Tester combinations.
Table 8. SCA values for protein, starch, lipids, and grain yield in Line × Tester combinations.
RankSCA ProteinSCA StarchSCA LipidSCA Grain Yield
LineTL × T (%)SCALineTL × T (%)SCALineTL × T (%)SCALineTL × T
(t ha−1)
SCA
1AN 8772 T9.300.19 *AN 8771 T70.730.60 *AN 18901 T4.040.14 *AN 132 T7.050.84 **
2AN20361 T9.640.18AN 20362 T69.560.52 *AN 131 T4.110.11 *AN 15692 T7.530.58
3AN 2882 T9.570.17AN 6322 T69.570.44AN 8461 T4.040.10AN 20331 T8.010.52
4AN 22492 T9.290.17AN 19452 T70.030.41AN 22492 T4.300.10AN 5941 T8.340.46
5AN 19451 T9.440.15AN 15342 T68.580.29AN 8772 T4.150.08AN 16652 T7.730.45
6AN 1972 T9.970.12AN 13841 T69.860.27AN 20332 T4.290.07AN 14501 T7.940.41
7AN 131 T10.100.12AN 2881 T69.370.26AN 4671 T4.070.07AN 12761 T8.410.40
8AN 14501 T9.550.11AN 1971 T68.360.25AN 6321 T4.260.07AN 6421 T7.980.34
9AN 18952 T9.470.11AN 20061 T68.910.23AN 13842 T4.170.06AN 4672 T6.740.33
10AN 13842 T9.350.11AN 18951 T69.530.23AN 18952 T4.270.05AN 19452 T7.370.32
11AN 13461 T9.330.10AN 6421 T69.100.22AN 6422 T4.290.05AN 20472 T7.200.30
12AN 15691 T9.470.10AN 12672 T69.310.19AN 15341 T3.920.05AN 21441 T8.130.30
13AN 12671 T9.400.10AN 132 T68.020.18AN 19602 T4.300.05AN 17982 T7.630.27
14AN 6321 T9.390.09AN 15692 T69.400.17AN 20472 T4.300.04AN 1971 T8.440.26
15AN 8712 T9.330.08AN 20472 T68.990.16AN 13462 T4.500.04AN 12671 T8.800.24
16AN 15341 T9.870.06AN 8711 T69.670.15AN 2881 T3.960.04AN 18901 T6.670.24
17AN 20062 T9.650.06AN 7731 T69.720.15AN 15091 T4.070.03AN 6321 T7.650.22
18AN 20471 T9.670.06AN 22491 T69.790.14AN 19452 T4.200.03AN 18952 T7.290.21
19AN 8462 T9.550.06AN 13462 T69.540.13AN 17982 T4.250.03AN 15092 T7.600.18
20AN 5942 T9.070.05AN 17982 T68.970.13AN 5942 T4.140.03AN 8771 T8.250.17
21AN 6422 T9.640.05AN 14502 T69.270.12AN 20362 T4.380.02AN 8462 T6.800.16
22AN 17981 T9.670.05AN 20331 T69.510.11AN 8711 T3.960.02AN 13461 T8.450.14
23AN 16652 T9.340.05AN 8461 T68.790.11AN 7731 T3.930.02AN 13842 T7.140.14
24AN 19601 T9.350.04AN 21442 T69.290.10AN 14501 T3.960.01AN 7732 T7.000.10
25AN 12761 T9.550.04AN 5941 T70.530.10AN 20061 T4.010.01AN 22491 T7.740.08
26AN 18902 T9.250.04AN 16651 T69.580.07AN 15692 T4.410.01AN 15341 T7.450.08
27AN 21441 T9.490.03AN 18902 T69.440.05AN 1972 T4.310.00AN 19601 T7.560.07
28AN 15091 T9.160.02AN 12762 T68.670.01AN 12671 T4.120.00AN 8712 T7.010.04
29AN 4672 T9.760.02AN 19602 T69.350.01AN 21442 T4.190.00AN 2882 T6.970.04
30AN 7731 T9.290.01AN 15092 T69.540.00AN 12761 T4.030.00AN 20061 T7.340.03
31AN 20332 T9.290.01AN 4672 T68.120.00AN 16651 T3.880.00AN 20361 T8.300.01
32AN 20331 T9.33−0.01AN 4671 T69.600.00AN 16652 T4.260.00AN 20362 T7.58−0.01
33AN 7732 T9.21−0.01AN 15091 T68.190.00AN 12762 T4.410.00AN 20062 T6.57−0.03
34AN 4671 T9.77−0.02AN 19601 T69.41−0.01AN 21441 T3.810.00AN 2881 T7.61−0.04
35AN 15092 T9.06−0.02AN 12761 T68.72−0.01AN 12672 T4.490.00AN 8711 T7.63−0.04
36AN 21442 T9.37−0.03AN 18901 T69.42−0.05AN 1971 T3.920.00AN 19602 T6.72−0.07
37AN 18901 T9.23−0.04AN 16652 T69.36−0.07AN 15691 T4.01−0.01AN 15342 T6.58−0.08
38AN 12762 T9.42−0.04AN 5942 T70.25−0.10AN 20062 T4.38−0.01AN 22492 T6.87−0.08
39AN 19602 T9.21−0.04AN 21441 T69.16−0.10AN 14502 T4.32−0.01AN 7731 T7.50−0.10
40AN 16651 T9.30−0.05AN 8462 T68.50−0.11AN 7732 T4.28−0.02AN 13841 T7.56−0.14
41AN 17982 T9.52−0.05AN 20332 T69.21−0.11AN 8712 T4.31−0.02AN 13462 T7.46−0.14
42AN 6421 T9.59−0.05AN 14501 T69.11−0.12AN 20361 T3.95−0.02AN 8461 T7.18−0.16
43AN 5941 T9.02−0.05AN 17981 T68.79−0.13AN 5941 T3.70−0.03AN 8772 T7.20−0.17
44AN 8461 T9.49−0.06AN 13461 T69.35−0.13AN 17981 T3.81−0.03AN 15091 T7.94−0.18
45AN 20472 T9.50−0.06AN 22492 T69.43−0.14AN 19451 T3.76−0.03AN 18951 T7.57−0.21
46AN 20061 T9.58−0.06AN 7732 T69.35−0.15AN 15092 T4.39−0.03AN 6322 T6.51−0.22
47AN 15342 T9.69−0.06AN 8712 T69.29−0.15AN 2882 T4.27−0.04AN 18902 T5.49−0.24
48AN 8711 T9.23−0.08AN 20471 T68.75−0.16AN 13461 T4.04−0.04AN 12672 T7.61−0.24
49AN 6322 T9.15−0.09AN 15691 T69.13−0.17AN 20471 T3.83−0.04AN 1972 T7.21−0.26
50AN 12672 T9.14−0.10AN 131 T67.72−0.18AN 19601 T3.82−0.05AN 17981 T7.79−0.27
51AN 15692 T9.21−0.10AN 12671 T68.99−0.19AN 15342 T4.20−0.05AN 21442 T6.83−0.30
52AN 13462 T9.07−0.10AN 6422 T68.58−0.22AN 6421 T3.81−0.05AN 20471 T7.31−0.30
53AN 13841 T9.19−0.11AN 18952 T68.99−0.23AN 18951 T3.78−0.05AN 19451 T7.44−0.32
54AN 18951 T9.30−0.11AN 20062 T68.36−0.23AN 13841 T3.66−0.06AN 4671 T6.78−0.33
55AN 14502 T9.27−0.11AN 1972 T67.79−0.25AN 6322 T4.51−0.07AN 6422 T6.59−0.34
56AN 132 T9.80−0.12AN 2882 T68.77−0.26AN 4672 T4.31−0.07AN 12762 T6.90−0.40
57AN 1971 T9.79−0.12AN 13842 T69.24−0.27AN 20331 T3.76−0.07AN 14502 T6.41−0.41
58AN 19452 T9.08−0.15AN 15341 T68.07−0.29AN 8771 T3.61−0.08AN 16651 T7.54−0.45
59AN 22491 T9.00−0.17AN 19451 T69.28−0.41AN 22491 T3.72−0.10AN 5942 T6.72−0.46
60AN 2881 T9.28−0.17AN 6321 T68.75−0.44AN 8462 T4.22−0.10AN 20332 T6.26−0.52
61AN20362 T9.21−0.18AN 20361 T68.59−0.52 *AN 132 T4.28−0.11 *AN 15691 T7.07−0.58
62AN 8771 T8.98−0.19 *AN 8772 T69.46−0.60 *AN 18902 T4.14−0.14 *AN 131 T6.07−0.84 **
Grand Mean9.41 Grand Mean69.14 Grand Mean4.11 Grand Mean7.34
St. Error0.10 St. Error0.24 St. Error0.06 St. Error0.32
* p < 0.05; ** p < 0.01; T—tester; 1 T—tester ZPL217; 2 T—tester ZPL-255/75-5.
Table 9. Correlation matrix for yield and basic chemical composition.
Table 9. Correlation matrix for yield and basic chemical composition.
ProteinsStarchLipidsYield
PROTEINS1−0.948 **0.130−0.718 **
STARCH−0.948 **1−0.368 *0.587 **
LIPIDS0.130−0.368 *10.024
YIELD−0.718 **0.587 **0.0241
Note: Significance levels: ** (p < 0.01); * (p < 0.05). Determinant = 0.014.
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Popović, A.; Babić, V.; Čamdžija, Z.; Živanov, S.; Branković-Radojčić, D.; Golijan Pantović, J.; Perić, V. Combining Ability of Maize Landraces for Yield and Basic Chemical Composition of Grain. Agronomy 2025, 15, 1012. https://doi.org/10.3390/agronomy15051012

AMA Style

Popović A, Babić V, Čamdžija Z, Živanov S, Branković-Radojčić D, Golijan Pantović J, Perić V. Combining Ability of Maize Landraces for Yield and Basic Chemical Composition of Grain. Agronomy. 2025; 15(5):1012. https://doi.org/10.3390/agronomy15051012

Chicago/Turabian Style

Popović, Aleksandar, Vojka Babić, Zoran Čamdžija, Srboljub Živanov, Dragana Branković-Radojčić, Jelena Golijan Pantović, and Vesna Perić. 2025. "Combining Ability of Maize Landraces for Yield and Basic Chemical Composition of Grain" Agronomy 15, no. 5: 1012. https://doi.org/10.3390/agronomy15051012

APA Style

Popović, A., Babić, V., Čamdžija, Z., Živanov, S., Branković-Radojčić, D., Golijan Pantović, J., & Perić, V. (2025). Combining Ability of Maize Landraces for Yield and Basic Chemical Composition of Grain. Agronomy, 15(5), 1012. https://doi.org/10.3390/agronomy15051012

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