Identification and Characterization of Diaporthe spp. Associated with Twig Cankers and Shoot Blight of Almonds in Spain
Abstract
:1. Introduction
2. Materials and Methods
2.1. Sampling and Isolation
2.2. DNA Extraction, PCR Amplification and Sequencing
2.3. Phylogenetic Analyses
2.4. Taxonomy
2.5. Pathogenicity Tests
3. Results
3.1. Phylogenetic Analyses
3.2. Taxonomy
3.3. Pathogenicity Tests
4. Discussion
Author Contributions
Funding
Acknowledgments
Conflicts of Interest
References
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Species | Strain Number | Year | Location | Province/Region | GenBank Accession Numbers | ||||
---|---|---|---|---|---|---|---|---|---|
ITS | tef-1α | tub | his | cal | |||||
D. amygdali | DAL-1 | 2014 | Sant Joan | Mallorca/Islas Baleares | MT007292 | MT006769 | MT006466 | - | - |
DAL-2 | 2014 | Sant Joan | Mallorca/Islas Baleares | MT007293 | MT006770 | MT006467 | - | - | |
DAL-3 | 2014 | Santa Margalida | Mallorca/Islas Baleares | MT007294 | MT006771 | MT006468 | MT006997 | MT006694 | |
DAL-4 | 2014 | Santa Margalida | Mallorca/Islas Baleares | MT007295 | MT006772 | MT006469 | MT006998 | MT006695 | |
DAL-5 | 2014 | Calvià | Mallorca/Islas Baleares | MT007296 | MT006773 | MT006470 | - | - | |
DAL-7 | 2014 | Calvià | Mallorca/Islas Baleares | MT007297 | MT006774 | MT006471 | MT006999 | - | |
DAL-9 | 2014 | Calvià | Mallorca/Islas Baleares | MT007298 | MT006775 | MT006472 | MT007000 | MT006696 | |
DAL-12 | 2014 | Binissalem | Mallorca/Islas Baleares | MT007299 | MT006776 | MT006473 | MT007001 | - | |
DAL-13 | 2014 | Llucmajor | Mallorca/Islas Baleares | MT007300 | MT006777 | MT006474 | - | - | |
DAL-14 | 2014 | Llucmajor | Mallorca/Islas Baleares | MT007301 | MT006778 | MT006475 | - | - | |
DAL-15 | 2014 | Marratxí | Mallorca/Islas Baleares | MT007302 | MT006779 | MT006476 | MT007002 | - | |
DAL-16 | 2014 | Sa Pobla | Mallorca/Islas Baleares | MT007303 | MT006780 | MT006477 | MT007003 | MT006697 | |
DAL-17 | 2014 | Sa Pobla | Mallorca/Islas Baleares | MT007304 | MT006781 | MT006478 | - | - | |
DAL-18 | 2014 | Inca | Mallorca/Islas Baleares | MT007305 | MT006782 | MT006479 | MT007004 | - | |
DAL-19 | 2014 | Binissalem | Mallorca/Islas Baleares | MT007306 | MT006783 | MT006480 | MT007005 | - | |
DAL-20 | 2014 | Palma | Mallorca/Islas Baleares | MT007307 | MT006784 | MT006481 | - | - | |
DAL-21 | 2014 | Binissalem | Mallorca/Islas Baleares | MT007308 | MT006785 | MT006482 | - | - | |
DAL-22 | 2014 | Llucmajor | Mallorca/Islas Baleares | MT007309 | MT006786 | MT006483 | MT007006 | - | |
DAL-23 | 2014 | Inca | Mallorca/Islas Baleares | MT007310 | MT006787 | MT006484 | - | - | |
DAL-32 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007313 | MT006790 | MT006487 | - | - | |
DAL-33 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007314 | MT006791 | MT006488 | - | - | |
DAL-35 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007315 | MT006792 | MT006489 | - | - | |
DAL-36 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007316 | MT006793 | MT006490 | - | - | |
DAL-37 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007317 | MT006794 | MT006491 | - | - | |
DAL-38 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007318 | MT006795 | MT006492 | - | - | |
DAL-39 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007319 | MT006796 | MT006493 | - | - | |
DAL-40 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007320 | MT006797 | MT006494 | - | - | |
DAL-41 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007321 | MT006798 | MT006495 | - | - | |
DAL-42 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007322 | MT006799 | MT006496 | MT007008 | MT006699 | |
DAL-43 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007323 | MT006800 | MT006497 | MT007009 | MT006700 | |
DAL-44 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007324 | MT006801 | MT006498 | - | - | |
DAL-45 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007325 | MT006802 | MT006499 | MT007010 | MT006701 | |
DAL-46 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007326 | MT006803 | MT006500 | - | - | |
DAL-47 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007327 | MT006804 | MT006501 | - | - | |
DAL-48 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007328 | MT006805 | MT006502 | MT007011 | MT006702 | |
D. amygdali (cont.) | DAL-49 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007329 | MT006806 | MT006503 | - | - |
DAL-50 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007330 | MT006807 | MT006504 | MT007012 | - | |
DAL-51 | 2017 | Bunyola | Mallorca/Islas Baleares | MT007331 | MT006808 | MT006505 | - | - | |
DAL-52 | 2017 | Palma | Mallorca/Islas Baleares | MT007332 | MT006809 | MT006506 | - | - | |
DAL-53 | 2017 | Palma | Mallorca/Islas Baleares | MT007333 | MT006810 | MT006507 | - | - | |
DAL-54 | 2017 | Palma | Mallorca/Islas Baleares | MT007334 | MT006811 | MT006508 | - | - | |
DAL-55 | 2017 | Palma | Mallorca/Islas Baleares | MT007335 | MT006812 | MT006509 | - | - | |
DAL-56 | 2017 | Palma | Mallorca/Islas Baleares | MT007336 | MT006813 | MT006510 | - | - | |
DAL-57 | 2017 | Palma | Mallorca/Islas Baleares | MT007337 | MT006814 | MT006511 | MT007013 | - | |
DAL-65 | 2017 | La Rinconada | Sevilla/Andalucía | MT007338 | MT006815 | MT006512 | MT007014 | - | |
DAL-70 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007339 | MT006816 | MT006513 | MT007015 | MT006703 | |
DAL-71 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007340 | MT006817 | MT006514 | - | - | |
DAL-72 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007341 | MT006818 | MT006515 | - | - | |
DAL-73 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007342 | MT006819 | MT006516 | - | - | |
DAL-74 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007343 | MT006820 | MT006517 | - | - | |
DAL-75 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007344 | MT006821 | MT006518 | - | - | |
DAL-76 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007345 | MT006822 | MT006519 | MT007016 | MT006704 | |
DAL-77 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007346 | MT006823 | MT006520 | - | - | |
DAL-78 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007347 | MT006824 | MT006521 | - | - | |
DAL-79 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007348 | MT006825 | MT006522 | - | - | |
DAL-80 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007349 | MT006826 | MT006523 | - | - | |
DAL-81 | 2018 | Montserrat | Valencia/Comunidad Valenciana | MT007350 | MT006827 | MT006524 | - | - | |
DAL-82 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007351 | MT006828 | MT006525 | MT007017 | MT006705 | |
DAL-83 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007352 | MT006829 | MT006526 | - | - | |
DAL-84 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007353 | MT006830 | MT006527 | - | - | |
DAL-85 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007354 | MT006831 | MT006528 | MT007018 | MT006706 | |
DAL-86 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007355 | MT006832 | MT006529 | - | - | |
DAL-87 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007356 | MT006833 | MT006530 | - | - | |
DAL-88 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007357 | MT006834 | MT006531 | - | - | |
DAL-89 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007358 | MT006835 | MT006532 | - | - | |
DAL-90 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007359 | MT006836 | MT006533 | - | - | |
DAL-91 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007360 | MT006837 | MT006534 | - | - | |
DAL-92 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007361 | MT006838 | MT006535 | - | - | |
DAL-93 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007362 | MT006839 | MT006536 | - | - | |
DAL-94 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007363 | MT006840 | MT006537 | MT007019 | - | |
D. amygdali (cont.) | DAL-95 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007364 | MT006841 | MT006538 | MT007020 | - |
DAL-96 | 2018 | Viver | Castellón/Comunidad Valenciana | MT007365 | MT006842 | MT006539 | - | - | |
DAL-97 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007366 | MT006843 | MT006540 | - | - | |
DAL-98 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007367 | MT006844 | MT006541 | - | - | |
DAL-103 | 2017 | Gibraleón | Huelva/Andalucía | MT007368 | MT006845 | MT006542 | MT007021 | MT006707 | |
DAL-104 | 2016 | El Contador | Almería/Andalucía | MT007369 | MT006848 | MT006543 | MT007022 | MT006708 | |
DAL-105 | 2017 | Alcalá del Río | Sevilla/Andalucía | MT007370 | MT006846 | MT006544 | MT007023 | MT006709 | |
DAL-108 | 2018 | Biar | Alicante/Comunidad Valenciana | MT007371 | MT006847 | MT006545 | MT007024 | MT006710 | |
DAL-109 | 2018 | Biar | Alicante/Comunidad Valenciana | MT007372 | MT006849 | MT006546 | - | - | |
DAL-110 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007373 | MT006850 | MT006547 | - | - | |
DAL-111 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007374 | MT006851 | MT006548 | - | - | |
DAL-112 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007375 | MT006852 | MT006549 | - | - | |
DAL-113 | 2018 | Fontanars dels Alforins | Valencia/Comunidad Valenciana | MT007376 | MT006853 | MT006550 | MT007025 | MT006711 | |
DAL-114 | 2018 | Fontanars dels Alforins | Valencia/Comunidad Valenciana | MT007377 | MT006854 | MT006551 | MT007026 | MT006712 | |
DAL-116 | 2018 | Alcublas | Valencia/Comunidad Valenciana | MT007378 | MT006855 | MT006552 | MT007027 | - | |
DAL-117 | 2018 | Alcublas | Valencia/Comunidad Valenciana | MT007379 | MT006856 | MT006553 | - | - | |
DAL-118 | 2018 | Casinos | Valencia/Comunidad Valenciana | MT007380 | MT006857 | MT006554 | - | - | |
DAL-119 | 2018 | Casinos | Valencia/Comunidad Valenciana | MT007381 | MT006858 | MT006555 | - | - | |
DAL-120 | 2018 | Casinos | Valencia/Comunidad Valenciana | MT007382 | MT006859 | MT006556 | - | - | |
DAL-121 | 2018 | Vall d’Alba | Castellón/Comunidad Valenciana | MT007383 | MT006860 | MT006557 | MT007028 | - | |
DAL-122 | 2018 | Vall d’Alba | Castellón/Comunidad Valenciana | MT007384 | MT006861 | MT006558 | - | - | |
DAL-125 | 2018 | Vall d’Alba | Castellón/Comunidad Valenciana | MT007385 | MT006862 | MT006559 | - | - | |
DAL-126 | 2018 | Vall d’Alba | Castellón/Comunidad Valenciana | MT007386 | MT006863 | MT006560 | - | - | |
DAL-128 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007387 | MT006864 | MT006561 | - | - | |
DAL-129 | 2018 | Godelleta | Valencia/Comunidad Valenciana | MT007388 | MT006865 | MT006562 | - | - | |
DAL-130 | 2018 | Torremendo | Alicante/Comunidad Valenciana | MT007389 | MT006866 | MT006563 | MT007029 | - | |
DAL-131 | 2018 | Torremendo | Alicante/Comunidad Valencian | MT007390 | MT006867 | MT006564 | - | - | |
DAL-132 | 2018 | Requena | Valencia/Comunidad Valenciana | MT007391 | MT006868 | MT006565 | MT007030 | MT006713 | |
DAL-133 | 2018 | Requena | Valencia/Comunidad Valenciana | MT007392 | MT006869 | MT006566 | MT007031 | - | |
DAL-134 | 2018 | Requena | Valencia/Comunidad Valenciana | MT007393 | MT006870 | MT006567 | MT007032 | - | |
DAL-135 | 2018 | L’Eliana | Valencia/Comunidad Valenciana | MT007394 | MT006871 | MT006568 | MT007033 | - | |
DAL-136 | 2018 | L’Eliana | Valencia/Comunidad Valenciana | MT007395 | MT006872 | MT006569 | - | - | |
DAL-138 | 2005 | Constantí | Tarragona/Cataluña | MT007396 | MT006873 | MT006570 | - | - | |
DAL-139 | 2005 | Constantí | Tarragona/Cataluña | MT007397 | MT006874 | MT006571 | MT007034 | - | |
DAL-140 | 2012 | Ulldecona | Tarragona/Cataluña | MT007398 | MT006875 | MT006572 | MT007035 | MT006714 | |
D. amygdali (cont.) | DAL-141 | 2016 | Gandesa | Tarragona/Cataluña | MT007399 | MT006876 | MT006573 | - | - |
DAL-143 | 2018 | Gandesa | Tarragona/Cataluña | MT007400 | MT006877 | MT006574 | - | - | |
DAL-144 | 2018 | Gandesa | Tarragona/Cataluña | MT007401 | MT006878 | MT006575 | - | - | |
DAL-145 | 2018 | Gandesa | Tarragona/Cataluña | MT007402 | MT006879 | MT006576 | - | - | |
DAL-146 | 2018 | Gandesa | Tarragona/Cataluña | MT007403 | MT006880 | MT006577 | MT007036 | - | |
DAL-147 | 2018 | Constantí | Tarragona/Cataluña | MT007404 | MT006881 | MT006578 | MT007037 | - | |
DAL-148 | 2018 | Constantí | Tarragona/Cataluña | MT007405 | MT006882 | MT006579 | MT007038 | - | |
DAL-149 | 2018 | Constantí | Tarragona/Cataluña | MT007406 | MT006883 | MT006580 | MT007039 | MT006715 | |
DAL-151 | 2018 | Constantí | Tarragona/Cataluña | MT007407 | MT006884 | MT006581 | - | - | |
DAL-152 | 2018 | Constantí | Tarragona/Cataluña | MT007408 | MT006885 | MT006582 | MT007040 | MT006716 | |
DAL-153 | 2018 | Constantí | Tarragona/Cataluña | MT007409 | MT006886 | MT006583 | - | - | |
DAL-154 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007410 | MT006887 | MT006584 | MT007041 | MT006717 | |
DAL-155 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007411 | MT006888 | MT006585 | MT007042 | MT006718 | |
DAL-156 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007412 | MT006889 | MT006586 | - | - | |
DAL-158 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007413 | MT006890 | MT006587 | - | - | |
DAL-159 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007414 | MT006891 | MT006588 | - | - | |
DAL-160 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007415 | MT006892 | MT006589 | - | - | |
DAL-161 | 2018 | Constantí | Tarragona/Cataluña | MT007416 | MT006893 | MT006590 | - | - | |
DAL-162 | 2018 | Constantí | Tarragona/Cataluña | MT007417 | MT006894 | MT006591 | - | - | |
DAL-163 | 2018 | Estepa | Sevilla/Andalucía | MT007418 | MT006895 | MT006592 | - | - | |
DAL-164 | 2018 | Estepa | Sevilla/Andalucía | MT007419 | MT006896 | MT006593 | MT007043 | MT006719 | |
DAL-167 | 2018 | Los Palacios | Sevilla/Andalucía | MT007420 | MT006897 | MT006594 | MT007044 | MT006720 | |
DAL-168 | 2018 | Los Palacios | Sevilla/Andalucía | MT007421 | MT006898 | MT006595 | - | - | |
DAL-169 | 2018 | Los Palacios | Sevilla/Andalucía | MT007422 | MT006899 | MT006596 | - | - | |
DAL-170 | 2018 | Los Palacios | Sevilla/Andalucía | MT007423 | MT006900 | MT006597 | - | - | |
DAL-171 | 2018 | Los Palacios | Sevilla/Andalucía | MT007424 | MT006901 | MT006598 | - | - | |
DAL-172 | 2018 | Los Palacios | Sevilla/Andalucía | MT007425 | MT006902 | MT006599 | MT007045 | - | |
DAL-181 | 2018 | Córdoba | Córdoba/Andalucía | MT007426 | MT006903 | MT006600 | MT007046 | MT006721 | |
DAL-182 | 2018 | Córdoba | Córdoba/Andalucía | MT007427 | MT006904 | MT006601 | - | - | |
DAL-183 | 2018 | Córdoba | Córdoba/Andalucía | MT007428 | MT006905 | MT006602 | - | - | |
DAL-184 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007429 | MT006906 | MT006603 | MT007047 | - | |
DAL-185 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007430 | MT006907 | MT006604 | - | - | |
DAL-186 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007431 | MT006908 | MT006605 | - | - | |
DAL-187 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007432 | MT006909 | MT006606 | - | - | |
D. amygdali (cont.) | DAL-188 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007433 | MT006910 | MT006607 | - | - |
DAL-189 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007434 | MT006911 | MT006608 | MT007048 | - | |
DAL-190 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007435 | MT006912 | MT006609 | MT007049 | MT006722 | |
DAL-191 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007436 | MT006913 | MT006610 | - | - | |
DAL-192 | 2018 | Mairena del Alcor | Sevilla/Andalucía | MT007437 | MT006914 | MT006611 | - | - | |
DAL-193 | 2018 | Ronda | Málaga/Andalucía | MT007438 | MT006915 | MT006612 | MT007050 | MT006723 | |
DAL-194 | 2018 | Ronda | Málaga/Andalucía | MT007439 | MT006916 | MT006613 | - | - | |
DAL-195 | 2018 | Ronda | Málaga/Andalucía | MT007440 | MT006917 | MT006614 | - | - | |
DAL-196 | 2018 | Ronda | Málaga/Andalucía | MT007441 | MT006918 | MT006615 | - | - | |
DAL-197 | 2018 | Ronda | Málaga/Andalucía | MT007442 | MT006919 | MT006616 | MT007051 | MT006724 | |
DAL-198 | 2018 | Ronda | Málaga/Andalucía | MT007443 | MT006920 | MT006617 | - | - | |
DAL-199 | 2018 | Ronda | Málaga/Andalucía | MT007444 | MT006921 | MT006618 | - | - | |
DAL-200 | 2018 | Ronda | Málaga/Andalucía | MT007445 | MT006922 | MT006619 | - | - | |
DAL-201 | 2018 | Ronda | Málaga/Andalucía | MT007446 | MT006923 | MT006620 | - | - | |
DAL-202 | 2018 | Ronda | Málaga/Andalucía | MT007447 | MT006924 | MT006621 | MT007052 | - | |
DAL-203 | 2018 | Reus | Tarragona/Cataluña | MT007448 | MT006925 | MT006622 | - | - | |
DAL-204 | 2018 | Reus | Tarragona/Cataluña | MT007449 | MT006926 | MT006623 | MT007053 | MT006725 | |
DAL-205 | 2018 | Reus | Tarragona/Cataluña | MT007450 | MT006927 | MT006624 | MT007054 | MT006726 | |
DAL-206 | 2018 | Riudoms | Tarragona/Cataluña | MT007451 | MT006928 | MT006625 | - | - | |
DAL-207 | 2018 | Riudoms | Tarragona/Cataluña | MT007452 | MT006929 | MT006626 | - | - | |
DAL-208 | 2018 | Riudoms | Tarragona/Cataluña | MT007453 | MT006930 | MT006627 | MT007055 | - | |
DAL-209 | 2018 | Riudoms | Tarragona/Cataluña | MT007454 | MT006931 | MT006628 | MT007056 | - | |
DAL-210 | 2018 | Riudoms | Tarragona/Cataluña | MT007455 | MT006932 | MT006629 | MT007057 | - | |
DAL-211 | 2018 | Riudoms | Tarragona/Cataluña | MT007456 | MT006933 | MT006630 | - | - | |
DAL-212 | 2018 | Riudoms | Tarragona/Cataluña | MT007457 | MT006934 | MT006631 | - | - | |
DAL-213 | 2018 | Riudoms | Tarragona/Cataluña | MT007458 | MT006935 | MT006632 | - | - | |
DAL-214 | 2018 | Botarell | Tarragona/Cataluña | MT007459 | MT006936 | MT006633 | - | - | |
DAL-215 | 2018 | Botarell | Tarragona/Cataluña | MT007460 | MT006937 | MT006634 | MT007058 | - | |
DAL-216 | 2018 | Botarell | Tarragona/Cataluña | MT007461 | MT006938 | MT006635 | MT007059 | - | |
DAL-219 | 2018 | Les Borges Blanques | Lérida/Cataluña | MT007462 | MT006939 | MT006636 | MT007060 | MT006727 | |
DAL-220 | 2018 | Isona i Conca Dellà | Lérida/Cataluña | MT007463 | MT006940 | MT006637 | MT007061 | MT006728 | |
DAL-221 | 2018 | Isona i Conca Dellà | Lérida/Cataluña | MT007464 | MT006941 | MT006638 | MT007062 | - | |
DAL-225 | 2019 | Murillo | Logroño/La Rioja | MT007465 | MT006942 | MT006639 | MT007063 | MT006729 | |
DAL-226 | 2019 | Murillo | Logroño/La Rioja | MT007466 | MT006943 | MT006640 | - | - | |
D. amygdali (cont.) | DAL-227 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007467 | MT006944 | MT006641 | MT007064 | MT006730 |
DAL-228 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007468 | MT006945 | MT006642 | - | - | |
DAL-229 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007469 | MT006946 | MT006643 | - | - | |
DAL-230 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007470 | MT006947 | MT006644 | - | - | |
DAL-231 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007471 | MT006948 | MT006645 | - | - | |
DAL-232 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007472 | MT006949 | MT006646 | - | - | |
DAL-233 | 2019 | Lagunilla | Logroño/La Rioja | MT007473 | MT006950 | MT006647 | MT007065 | MT006731 | |
DAL-234 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007474 | MT006951 | MT006648 | - | - | |
DAL-236 | 2019 | Alcalá del Río | Sevilla/Andalucía | MT007475 | MT006952 | MT006649 | MT007066 | - | |
DAL-237 | 2019 | Alcalá del Río | Sevilla/Andalucía | MT007476 | MT006953 | MT006650 | - | - | |
DAL-238 | 2019 | Alcalá del Río | Sevilla/Andalucía | MT007477 | MT006954 | MT006651 | - | - | |
DAL-239 | 2019 | Córdoba | Córdoba/Andalucía | MT007478 | MT006955 | MT006652 | - | - | |
DAL-240 | 2019 | Córdoba | Córdoba/Andalucía | MT007479 | MT006956 | MT006653 | MT007067 | MT006732 | |
DAL-241 | 2019 | Córdoba | Córdoba/Andalucía | MT007480 | MT006957 | MT006654 | - | - | |
DAL-242 | 2019 | Santa Cruz | Córdoba/Andalucía | MT007481 | MT006958 | MT006655 | - | - | |
DAL-243 | 2019 | Córdoba | Córdoba/Andalucía | MT007482 | MT006959 | MT006656 | - | - | |
DAL-244 | 2019 | Villamanrique de la Condesa | Sevilla/Andalucía | MT007483 | MT006960 | MT006657 | MT007068 | MT006733 | |
DAL-245 | 2019 | Villamanrique de la Condesa | Sevilla/Andalucía | MT007484 | MT006961 | MT006658 | - | - | |
DAL-246 | 2019 | Santa Engracia de Jubera | Logroño/La Rioja | MT007485 | MT006962 | MT006659 | - | - | |
D. eres | DAL-102 | 2016 | Córdoba | Córdoba/Andalucía | MN997106 | MT007104 | MT006462 | MT007106 | MT006465 |
D. foeniculina | DAL-10 | 2014 | Santa Margalida i Calvià | Mallorca/Islas Baleares | MT007497 | MT006963 | MT006660 | MT007069 | MT006734 |
DAL-11 | 2014 | Mallorca/Islas Baleares | MT007498 | MT006964 | MT006661 | MT007070 | MT006735 | ||
DAL-27 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007499 | MT006965 | MT006662 | MT007071 | MT006736 | |
DAL-28 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007500 | MT006966 | MT006663 | MT007072 | MT006737 | |
DAL-30 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007501 | MT006967 | MT006664 | MT007073 | MT006738 | |
DAL-31 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007502 | MT006968 | MT006665 | MT007074 | MT006739 | |
DAL-61 | 2016 | Alcalá del Río | Sevilla/Andalucía | MT007503 | MT006969 | MT006666 | MT007075 | MT006740 | |
DAL-62 | 2016 | Alcalá del Río | Sevilla/Andalucía | MT007504 | MT006970 | MT006667 | MT007076 | MT006741 | |
DAL-63 | 2016 | Alcalá del Río | Sevilla/Andalucía | MT007505 | MT006971 | MT006668 | MT007077 | MT006742 | |
DAL-64 | 2016 | Alcalá del Río | Sevilla/Andalucía | MT007506 | MT006972 | MT006669 | MT007078 | MT006743 | |
DAL-66 | 2017 | La Rinconada | Sevilla/Andalucía | MT007507 | MT006973 | MT006670 | MT007079 | MT006744 | |
DAL-67 | 2017 | La Rinconada | Sevilla/Andalucía | MT007508 | MT006974 | MT006671 | MT007080 | MT006745 | |
DAL-68 | 2017 | La Rinconada | Sevilla/Andalucía | MT007509 | MT006975 | MT006672 | MT007081 | MT006746 | |
DAL-69 | 2017 | La Rinconada | Sevilla/Andalucía | MT007510 | MT006976 | MT006673 | MT007082 | MT006747 | |
DAL-99 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007511 | MT006977 | MT006674 | MT007083 | MT006748 | |
DAL-100 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007512 | MT006978 | MT006675 | MT007084 | MT006749 | |
D. foeniculina (cont.) | DAL-101 | 2018 | Fuente la Higuera | Valencia/Comunidad Valenciana | MT007513 | MT006979 | MT006676 | MT007085 | MT006750 |
DAL-107 | 2018 | Marchena | Sevilla/Andalucía | MT007514 | MT006980 | MT006677 | MT007086 | MT006751 | |
DAL-142 | 2018 | Cabrils | Barcelona/Cataluña | MT007515 | MT006981 | MT006678 | MT007087 | MT006752 | |
DAL-150 | 2018 | Constantí | Tarragona/Cataluña | MT007516 | MT006982 | MT006679 | MT007088 | MT006753 | |
DAL-157 | 2018 | La Selva del Camp | Tarragona/Cataluña | MT007517 | MT006983 | MT006680 | MT007089 | MT006754 | |
DAL-165 | 2018 | Estepa | Sevilla/Andalucía | MT007518 | MT006984 | MT006681 | MT007090 | MT006755 | |
DAL-217 | 2018 | Les Borges Blanques | Lérida/Cataluña | MT007519 | MT006985 | MT006682 | MT007091 | MT006756 | |
D. mediterranea | DAL-6 | 2014 | Calvià | Mallorca/Islas Baleares | MT007486 | MT006986 | MT006683 | MT007092 | MT006758 |
DAL-8 | 2014 | Consell | Mallorca/Islas Baleares | MT007487 | MT006987 | MT006684 | MT007093 | MT006759 | |
DAL-24 | 2014 | Sant Llorenç d’Escardassar | Mallorca/Islas Baleares | MT007488 | MT006988 | MT006685 | MT007094 | MT006760 | |
DAL-34 | 2017 | Alcalalí | Alicante/Comunidad Valenciana | MT007489 | MT006989 | MT006686 | MT007095 | MT006761 | |
DAL-173 | 2018 | Altea la Vella | Alicante/Comunidad Valenciana | MT007493 | MT006993 | MT006691 | MT007099 | MT006765 | |
DAL-174 | 2018 | Altea la Vella | Alicante/Comunidad Valenciana | MT007494 | MT006994 | MT006690 | MT007100 | MT006766 | |
DAL-175 | 2018 | Altea la Vella | Alicante/Comunidad Valenciana | MT007495 | MT006995 | MT006692 | MT007101 | MT006767 | |
DAL-176 | 2018 | Altea la Vella | Alicante/Comunidad Valenciana | MT007496 | MT006996 | MT006693 | MT007102 | MT006768 | |
D. phaseolorum | DAL-222 | 2016 | Alcalá del Río | Sevilla/Andalucía | MN997107 | MT007103 | MT006463 | MT007105 | MT006464 |
Species | Strain | Host | Country | GenBank Accession Numbers | ||||
---|---|---|---|---|---|---|---|---|
ITS | tef-1α | tub | his | cal | ||||
D. acaciigena | CBS 129521 | Acacia retinodes | Australia | KC343005 | KC343731 | KC343973 | KC343489 | KC343247 |
D. amygdali | CBS 126679 | Prunus dulcis | Portugal | KC343022 | KC343748 | KC343990 | KC343506 | KC343264 |
CBS 111811 | Vitis vinifera | South Africa | KC343019 | KC343745 | KC343987 | KC343503 | KC343261 | |
D. celastrina | CBS 139.27 | Celastrus scandens | USA | KC343047 | KC343773 | KC344015 | KC343531 | KC343289 |
D. celeris | CBS 143349 | Vitis vinifera | UK | MG281017 | MG281538 | MG281190 | MG281363 | MG281712 |
CBS 143350 | Vitis vinifera | UK | MG281018 | MG281539 | MG281191 | MG281364 | MG281713 | |
D. chamaeropis | CBS 454.81 | Chamaerops humilis | Greece | KC343048 | KC343774 | KC344016 | KC343532 | KC343290 |
CBS 753.70 | Spartium junceum | Croatia | KC343049 | KC343775 | KC344017 | KC343533 | KC343291 | |
D. chongqingensis | PSCG 435 | Pyrus pyrifolia | China | MK626916 | MK654866 | MK691321 | MK726257 | MK691209 |
PSCG 436 | Pyrus pyrifolia | China | MK626917 | MK654867 | MK691322 | MK726256 | MK691208 | |
D. cinerascens | CBS 719.96 | Ficus carica | Bulgaria | KC343050 | KC343776 | KC344018 | KC343534 | KC343292 |
D. endophytica | CBS 133811 | Schinus terebinthifolius | Brazil | KC343065 | KC343791 | KC344033 | KC343549 | KC343307 |
LGMF911 | Schinus terebinthifolius | Brazil | KC343066 | KC343792 | KC344034 | KC343550 | KC343308 | |
D. eres | CBS 138594 | Ulmus laevis | Germany | KJ210529 | KJ210550 | KJ420799 | KJ420850 | KJ434999 |
CBS 109767 | Acer campestre | Austria | KC343075 | KC343801 | KC344043 | KC343559 | KC343317 | |
D. foeniculina | CBS 111553 | Foeniculum vulgare | Spain | KC343101 | KC343827 | KC344069 | KC343585 | KC343343 |
CBS 187.27 | Camellia sinensis | Italy | KC343107 | KC343833 | KC344075 | KC343591 | KC343349 | |
D. fusicola | CGMCC 3.17087 | Lithocarpus glabra | China | KF576281 | KF576256 | KF576305 | - | KF576233 |
CGMCC 3.17088 | Lithocarpus glabra | China | KF576263 | KF576238 | KF576287 | - | KF576221 | |
D. garethjonesii | MFLUCC 12-0542A | Unknown dead leaf | Thailand | KT459423 | KT459457 | KT459441 | - | KT459470 |
D. helicis | CBS 138596 | Hederahelix | Germany | KJ210538 | KJ210559 | KJ420828 | KJ420875 | KJ435043 |
D. kadsurae | CFCC 52586 | Kadsura longipedunculata | China | MH121521 | MH121563 | MH121600 | MH121479 | MH121439 |
CFCC 52587 | Kadsura longipedunculata | China | MH121522 | MH121564 | MH121601 | MH121480 | MH121440 | |
D. masirevicii | BRIP 54120c | Zea mays | Australia | KJ197278 | KJ197240 | KJ197258 | - | - |
BRIP 57892a | Helianthus annuus | Australia | KJ197276 | KJ197239 | KJ197257 | - | - | |
D. ovalispora | ICMP20659 | Citrus limon | China | KJ490628 | KJ490507 | KJ490449 | KJ490570 | - |
D. ovoicicola | CGMCC 3.17092 | Lithocarpus glabra | China | KF576264 | KF576239 | KF576288 | - | KF576222 |
CGMCC 3.17093 | Citrus sp. | China | KF576265 | KF576240 | KF576289 | - | KF576223 | |
D. phaseolorum | CBS 113425 | Olearia cf. rani | New Zealand | KC343174 | KC343900 | KC344142 | KC343658 | KC343416 |
CBS 116019 | Caperonia palustris | USA | KC343175 | KC343901 | KC344143 | KC343659 | KC343417 | |
D. pulla | CBS 338.89 | Hedera helix | Croatia | KC343152 | KC343878 | KC344120 | KC343636 | KC343394 |
D. pustulata | CBS 109742 | Acer pseudoplatanus | Austria | KC343185 | KC343911 | KC344153 | KC343669 | KC343427 |
CBS 109784 | Prunus padus | Austria | KC343187 | KC343913 | KC344155 | KC343671 | KC343429 | |
D. sojae | CBS 100.87 | Glycine soja | Italy | KC343196 | KC343922 | KC344164 | KC343680 | KC343438 |
CBS 116017 | Euphorbia nutans | USA | KC343197 | KC343923 | KC344165 | KC343681 | KC343439 | |
D. sterilis | CBS 136969 | Vaccinium corymbosum | Italy | KJ160579 | KJ160611 | KJ160528 | MF418350 | KJ160548 |
CBS 136970 | Vaccinium corymbosum | Italy | KJ160580 | KJ160612 | KJ160529 | - | KJ160549 | |
D. subellipicola | MFLUCC 17-1197 | On dead wood | China | MG746632 | MG746633 | MG746634 | - | - |
Diaporthella corylina | CBS 121124 | Corylus sp. | China | KC343004 | KC343730 | KC343972 | KC343488 | KC343246 |
Phomopsis sp. 5 | PMM1657 | Vitis vinifera | South Africa | KY511331 | - | KY511363 | - | - |
PMM1660 | Vitis vinifera | South Africa | KY511333 | - | KY511365 | - | - |
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León, M.; Berbegal, M.; Rodríguez-Reina, J.M.; Elena, G.; Abad-Campos, P.; Ramón-Albalat, A.; Olmo, D.; Vicent, A.; Luque, J.; Miarnau, X.; et al. Identification and Characterization of Diaporthe spp. Associated with Twig Cankers and Shoot Blight of Almonds in Spain. Agronomy 2020, 10, 1062. https://doi.org/10.3390/agronomy10081062
León M, Berbegal M, Rodríguez-Reina JM, Elena G, Abad-Campos P, Ramón-Albalat A, Olmo D, Vicent A, Luque J, Miarnau X, et al. Identification and Characterization of Diaporthe spp. Associated with Twig Cankers and Shoot Blight of Almonds in Spain. Agronomy. 2020; 10(8):1062. https://doi.org/10.3390/agronomy10081062
Chicago/Turabian StyleLeón, Maela, Mónica Berbegal, José M. Rodríguez-Reina, Georgina Elena, Paloma Abad-Campos, Antonio Ramón-Albalat, Diego Olmo, Antonio Vicent, Jordi Luque, Xavier Miarnau, and et al. 2020. "Identification and Characterization of Diaporthe spp. Associated with Twig Cankers and Shoot Blight of Almonds in Spain" Agronomy 10, no. 8: 1062. https://doi.org/10.3390/agronomy10081062