Diet to Data: Validation of a Bias-Mitigating Nutritional Screener Using Assembly Theory
Abstract
1. Introduction
1.1. What Is the Guide Against Age Related Disease (GARD)?
1.2. What Is Assembly Theory and How Does It Apply to Human Health?
- Assembly Index (Ai)—the smallest number of physical steps needed to construct an object from basic building blocks.
- Copy Number (Ni)—the number of identical copies of that object in a given environment.
1.3. How Assembly Theory Can Measure Diet Behaviors
2. Materials and Methods
2.1. Data Collection Methods
2.2. Collecting the Food Diary
2.3. Defining a Point
2.4. Grading of High-Complexity Variables
2.4.1. Fresh Plant
2.4.2. Farm-Direct Animal Product
2.4.3. Fermented Food
2.4.4. Fasting (Autophagy)
2.4.5. Social Eating
2.4.6. Outside Eating
2.5. Grading of Low-Complexity Variables
2.5.1. Processed Ingredients
2.5.2. Refined Ingredients
2.5.3. Processed Animal Products
2.5.4. Ultra-Processed Foods
2.5.5. Distracted Eating
2.5.6. Over-Consumptive Eating
2.6. Grading the Food Diary
2.7. Survey Distribution
2.8. Population
2.9. Statistical Analysis
- 1.
- There is no significant positive correlation within a patient’s diet between high-complexity diets and high-complexity behaviors (test of convergent validity).
- 2.
- There is no significant positive correlation within a patient’s diet between low-complexity diets and low-complexity behaviors (test of convergent validity)
- 3.
- There is no significant negative correlation within a patient’s diet between mismatched pairs: high-complexity diets with low-complexity behaviors, and low-complexity diets with high-complexity behaviors (tests of discriminant validity).
- 4.
- We expect to reject the nulls for aligned and mismatched pairs.
3. Results
3.1. Internal Validity
3.1.1. Convergent Validity
3.1.2. Discriminant Validity
3.1.3. Face Validity
3.2. Construct Validity
Known Group Validity
4. Discussion
Limitations
5. Conclusions
Supplementary Materials
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Conflicts of Interest
Abbreviations
Ai | Assembly Index |
Ni | Copy Number |
FFB | Food and Food Behavior |
GARD | Guide Against Age-Related Disease |
UPF | Ultra-Processed Food |
MoCA | Montreal Cognitive Assessment |
NIH | National Institutes of Health |
PUFA | Polyunsaturated Fatty Acid |
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High Assembly Index (Ai) and High Copy Number (Ni) | |
DNA polymerase | Enzyme with a complex sequence and local geometry (high Ai) Replicated billions of times in biology (high Ni) |
Apples | Biological structure: cells, tissues, proteins, pigments (high A i) Harvested globally (high Ni) |
The English language | Evolved over thousands of years and formed by thousands of words (high Ai) Recreated with little variation globally (high Ni) |
High Assembly Index (Ai) and Low Copy Number (Ni) | |
Experimental protein designs | Complex sequence and local geometry (high Ai) Novel Molecule after first synthesis (low Ni) |
Hand-crafted pastry | Complex structure involving multiple layers, fillings, and precise techniques (high Ai) Produced in small batches by artisanal bakers (low Ni) |
The word “alacrity” | Thousands of years of culture to create the word (high Ai) Infrequently used (Low Ai) |
Low Assembly Index (Ai) and High Copy Number (Ni) | |
Water (H2O) | Often a biproduct on single step organic reactions (Low Ai) Found universally in high abundance (high Ni) |
High fructose corn syrup | Fructose molecules refined from a source which initially required <15 steps to assemble the carbohydrate (Low Ai); * Produced globally for sweeteners (high Ni) |
The sound of a rock falling on impact | Created by a single step process (low Ai) Occurs universally (high Ni) |
Low Assembly Index (Ai) and Low Copy Number (Ni) | |
Nitric oxide radical (NO•) | Simple molecule often a biproduct (Low Ai) Reactive and short-lived (Low Ni) |
Snowball | Formed by aggregation of ice crystals via simple mechanical action (Low Ai) Individually formed and short-lived (Low Ni) |
Examples of Behavioral Complexity | |||
---|---|---|---|
Social Eating * | Value | Distracted Eating | Value |
Eating a meal with family and/or friends | (+1) | Any eating while watching television | (−1) |
Eating a meal while at an indoor soccer game | (+1) | Eating during a lecture | (−1) |
Eating a meal while periodically petting your dog | (+1) | Eating while diving | (−1) |
Outside Eating | Value | Over-Consumptive Eating | Value |
Eating while on a park bench alone | (+1) | Eating more servings than on the nutrition label | (−1) |
Eating while at an outdoor soccer game | (+1) | Eating to the point of discomfort | (−1) |
Eating strawberries while harvesting | (+1) | Drinking more than 4 standard drinks in an evening | (−1) |
Quantifiable Food and Food Behavior Categories | |||
---|---|---|---|
High-Complexity Diet | Point Value | Low-Complexity Diet | Point Value |
Farm-Direct Animal Product | (+1) | Processed Animal Product | (−1) |
Fresh Plants | (+1) | Processed Ingredient | (−1) |
Fermented Foods | (+1) | Refined Ingredient | (−1) |
Fasting (Autophagy) | (+7) | Ultra-Processed Food | (−1) |
High-Complexity Behavior | Point Value | Low-Complexity Behavior | Point Value |
Social Eating | (+1) | Distracted Eating | (−1) |
Outside Eating | (+1) | Over-consumptive Eating | (−1) |
Complexity Based Off of Degrees of Separation | |||
---|---|---|---|
2 or less degrees of separation | Value | 3 or more degrees of separation | Value |
Deer meat the patient hunted | (+1) | Packaged meat from a store | (−1) |
Chicken eggs from a friend | (+1) | Deli meat from the supermarket | (−1) |
Meat from the farmer’s market | (+1) | Barbeque from a restaurant | (−1) |
Complexity Grade for a Generic Ham Sandwich | |||
---|---|---|---|
Ingredient | Variable | Complexity Grade | Point Value |
White Bread | Refined Ingredient | Low | (−1) |
Deli Ham | Processed Animal Product | Low | (−1) |
Mustard | Processed Ingredient (Food Dye) | Low | (−1) |
Tomato | Fresh Plant | High | (+1) |
Lettuce | Fresh Plant | High | (+1) |
Category | Variable | Ai (Assembly Index) of Average Molecule | Ni (Copy Number) of Average Molecule | Total | GARD Score |
---|---|---|---|---|---|
High Complexity | Fresh Plant | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) |
Farm-DirectProduct | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
Fermented Food | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
Autophagy (Fasting) | 9 (Extremely High) | 9 (Extremely High) | 18 | (+1) | |
Low Complexity | Processed Ingredient | 3 (Low) | 8 (Very High) | 11 | (−1) |
Refined Ingredient | 2 (Very Low) | 9 (Extremely High) | 11 | (−1) | |
Processed Animal Product | 7 (High) | 8 (Very High) | 15 | (−1) | |
Ultra-Processed Food | 1 (Extremely Low) | 9 (Extremely High) | 10 | (−1) |
Category | Variable | Internal Validity in Assembly Theory |
---|---|---|
High Complexity | Fresh Plant | Fresh plants contain diverse, complex biomolecules (e.g., polyphenols, fibers) requiring many synthetic steps (extremely high Ai), with widespread repetition in plant tissue (extremely high Ni). |
Farm-Direct Animal Product | Whole animal products (meat, seafood) have structured proteins, fats, carbohydrates, and nucleic acids (extremely high Ai) with considerable repetition within a given tissue (extremely high Ni). | |
Fermented Food | Fermentation increases biochemical complexity via the presence of microbiotic life (extremely high Ai) with high molecular repetition within individual bacteria (extremely high Ni). | |
Autophagy (Fasting) | Autophagy recycles highly structured biomolecules, organelles, glycogen, fatty acid chains (extremely high Ai), which exist in repeating cell types with in a tissue (extremely high Ni). | |
Low Complexity | Processed Ingredient | Processed ingredients are designed for easy manufacturing (low Ai) at large volume (very high Ni) |
Refined Ingredient | Industrial processing simplifies molecular structure taking complex biomolecules (i.e., Amylopectin) and turning them into simplified molecules (i.e., Glucose, Fructose) (low Ai) while increasing uniformity and repetition (very high Ni). | |
Processed Animal Product | Research shows measurable differences in nutritional complexity between processed meat and farm-direct, pasture-raised meat. Specifically, meat from farmers’ markets—typically pasture-raised and minimally handled—contains significantly higher levels of omega-3 fatty acids, conjugated linoleic acid (CLA), and fat-soluble vitamins like A and E [62,63]. These nutrients result from the animals’ forage-based diets and shorter storage times, which help preserve delicate compounds and vitamins [64,65]. In contrast, processed meat, while chemically dense and uniform, lacks this diversity and freshness. As a result, processed meat exhibits contain less complex molecules (high Ai) compared to farm-direct meat, which contains a more varied and functionally rich molecular structure. However, processed meat still retains a high number of repeated molecules throughout the tissues (Very High Ni). | |
Ultra-Processed Food | Ultra-processed foods by definition contain manufactured ingredients (extremely low Ai) and refined ingredients that are mass-produced and highly repetitive (extremely high Ni). |
Category | Variable | Ai (Assembly Index) of Average Molecule | Ni (Copy Number) of Average Molecule | Total | GARD Score |
---|---|---|---|---|---|
High-Complexity Behavior | Social Eating | 8 (High) | 8 (High) | 16 | (+1) |
Outside Eating | 8 (High) | 8 (High) | 16 | (+1) | |
Low-Complexity Behavior | Distracted Eating | 4 (Low) | 9 (Extremely High) | 13 | (−1) |
Over-Indulgent Eating | 3 (Very Low) | 9 (Extremely High) | 12 | (−1) |
Category | Internal Validity in Assembly Theory |
---|---|
High-Complexity Behavior | Social eating requires complex social structures, communication, and shared rituals (high Ai). It has been a fundamental aspect of human evolution across cultures and time (high Ni). |
Eating in dynamic outdoor environments requires physiological adaptation to variable conditions (high Ai). This behavior was the norm for most of human history (high Ni). | |
Low-Complexity Behavior | Eating while distracted lacks engagement with environmental and social cues, reducing behavioral complexity (low Ai). It is a modern behavior that has become widespread (extremely high Ni). |
Overeating prioritizes quantity over adaptive responses to hunger and social context, diminishing behavioral complexity (very low Ai). Engineered food environments have made it exceedingly common (extremely high Ni). |
NIH: Healthy Meal Planning: Tips for Older Adults | ||
---|---|---|
GARD Score | ||
Daily Diet (Total GARD score for 3 Meals) | Store Bought | Farm Bought All Homemade |
Daily Meal Plan 1 | 16 | 27 |
Daily Meal Plan 2 | 14 | 22 |
Daily Meal Plan 3 | 12 | 25 |
Average | 14 | 23 |
GARD Score for Daily Mediterranean Diets | ||
---|---|---|
GARD Score | ||
Daily Diet (Total GARD score for 3 Meals) | Store Bought | Farm Bought All Homemade |
Daily Meal Plan 1 | 19 | 27 |
Daily Meal Plan 2 | 17 | 22 |
Daily Meal Plan 3 | 7 | 13 |
Average | 14 | 21 |
80% Ultra-Processed Food Diet | ||
---|---|---|
GARD Score | ||
Daily Diet (Total GARD score for 3 Meals) | Store Bought | Farm Bought All Homemade |
Daily Meal Plan 1 | 1 | N/A |
Daily Meal Plan 2 | −10 | |
Daily Meal Plan 3 | 1 | |
Total | −1 |
Standard American Diet | ||
---|---|---|
GARD Score | ||
Daily Diet (Total GARD score for 3 Meals) | Store Bought | Farm Bought All Homemade |
Daily Meal Plan 1 | −12 | N/A |
Daily Meal Plan 2 | −8 | |
Daily Meal Plan 3 | −9 | |
Average | −10 |
Proposed GARD Score Correlations for Future Study | |
---|---|
Proposed High GARD Score Biomarker Correlations | Proposed Low GARD Score Biomarker Correlations |
Lower fasting insulin levels | Lower levels of Vitamin D |
Lower average blood sugar (Hemoglobin A1c) | Lower levels of Cobalamin |
Lower Apolipoprotein B (marker of serum lipid levels) | Higher C-reactive protein (CRP) |
Proposed High GARD Score Patient Outcome Correlations | Proposed Low GARD Score Patient Outcome Correlations |
Lower rates of 30-day hospital readmission | Higher rates of Colon Cancer |
Lower quantity of diagnosed chronic conditions | Higher rates of End Stage Renal Disease |
Lower patient Body Mass Index (BMI) | Higher rates of Fragility Fractures |
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© 2025 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
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Penrose, O.C.; Gross, P.J.; Singh, H.; Rynarzewska, A.I.; Ayazo, C.; Jones, L. Diet to Data: Validation of a Bias-Mitigating Nutritional Screener Using Assembly Theory. Nutrients 2025, 17, 2459. https://doi.org/10.3390/nu17152459
Penrose OC, Gross PJ, Singh H, Rynarzewska AI, Ayazo C, Jones L. Diet to Data: Validation of a Bias-Mitigating Nutritional Screener Using Assembly Theory. Nutrients. 2025; 17(15):2459. https://doi.org/10.3390/nu17152459
Chicago/Turabian StylePenrose, O’Connell C., Phillip J. Gross, Hardeep Singh, Ania Izabela Rynarzewska, Crystal Ayazo, and Louise Jones. 2025. "Diet to Data: Validation of a Bias-Mitigating Nutritional Screener Using Assembly Theory" Nutrients 17, no. 15: 2459. https://doi.org/10.3390/nu17152459
APA StylePenrose, O. C., Gross, P. J., Singh, H., Rynarzewska, A. I., Ayazo, C., & Jones, L. (2025). Diet to Data: Validation of a Bias-Mitigating Nutritional Screener Using Assembly Theory. Nutrients, 17(15), 2459. https://doi.org/10.3390/nu17152459