Next Article in Journal
Lactobacillus Probiotics Improve Vaginal Dysbiosis in Asymptomatic Women
Next Article in Special Issue
Prevention of the Pro-Aggressive Effects of Ethanol-Intoxicated Mice by Schisandrin B
Previous Article in Journal
Human Milk Calorie Guide: A Novel Color-Based Tool to Estimate the Calorie Content of Human Milk for Preterm Infants
Previous Article in Special Issue
Effect of Lycopene Intake on the Fasting Blood Glucose Level: A Systematic Review with Meta-Analysis
 
 
Search for Articles:
Title / Keyword
Author / Affiliation / Email
Journal
Article Type
 
 
Advanced Search
 
Section
Special Issue
Volume
Issue
Number
Page
 
Journals
Nutrients
Volume 15
Issue 8
10.3390/nu15081867
nutrients-logo
Submit to this Journal Review for this Journal Propose a Special Issue
► Article Menu

Article Menu

share Share announcement Help format_quote Cite question_answer Discuss in SciProfiles thumb_up
...
Endorse textsms
...
Comment
first_page
settings
Order Article Reprints
Font Type:
Arial Georgia Verdana
Font Size:
Aa Aa Aa
Line Spacing:
Column Width:
Background:
Article

Fruit Extract, Rich in Polyphenols and Flavonoids, Modifies the Expression of DNMT and HDAC Genes Involved in Epigenetic Processes

by
Ghodratollah Nowrasteh
1,
Afshin Zand
1,
László Bence Raposa
2,
László Szabó
1,
András Tomesz
1,
Richárd Molnár
1,
István Kiss
1,
Zsuzsa Orsós
1,
Gellért Gerencsér
1,
Zoltán Gyöngyi
1,* and
Tímea Varjas
1
1
Department of Public Health Medicine, Medical School, University of Pécs, 7624 Pécs, Hungary
2
Faculty of Health Sciences, University of Pécs, 7621 Pécs, Hungary
*
Author to whom correspondence should be addressed.
Nutrients 2023, 15(8), 1867; https://doi.org/10.3390/nu15081867
Submission received: 11 March 2023 / Revised: 10 April 2023 / Accepted: 11 April 2023 / Published: 13 April 2023
(This article belongs to the Special Issue Phytochemicals and Chronic Diseases Prevention)
Browse Figures
Versions Notes

Abstract

:
Recently, the field of epigenetics has been intensively studied in relation to nutrition. In our study, the gene expression patterns of histone deacetylases (HDACs), which regulate the stability of histone proteins, and DNA methyltransferases (DNMTs), which regulate DNA methylation, were determined in mice. The animals were fed a human-equivalent dose of the aqueous extract of fruit seeds and peels, which is rich in flavonoids and polyphenols, for 28 days and then exposed to the carcinogen 7,12-dimethylbenz(a)anthracene (DMBA). The concentrations of trans-resveratrol and trans-piceid were determined in the consumed extract by HPLC and were 1.74 mg/L (SD 0.13 mg/L) and 2.37 mg/L (SD 0.32 mg/L), respectively, which corresponds to the consumption of 0.2–1 L of red wine, the main dietary source of resveratrol, in humans daily. Subsequently, 24 h after DMBA exposure, the expression patterns of the HDAC and DNMT genes in the liver and kidneys were determined by qRT-PCR. The DMBA-induced expression of the tested genes HDAC1, HDAC2, DNMT1, DNMT3A and DNMT3B was reduced in most cases by the extract. It has already been shown that inhibition of the DNMT and HDAC genes may delay cancer development and tumour progression. We hypothesise that the extract studied may exert chemopreventive effects.

1. Introduction

Malignant diseases are associated with high mortality rate, and identifying novel methods of reducing the development and progression of these diseases is of high interest. Recently, epigenetic changes caused by environmental factors, including nutrition, have been intensively studied [1]. Substances in food can alter the normal methylation patterns of DNA, resulting in either the abnormal inactivation or activation of genes, both of which can lead to cancer progression.
The methylation status of DNA, especially within promoter regions, can have notable effects on both the incidence and progression of many types of malignant diseases. Aberrant methylation patterns have been observed in almost all neoplasms, suggesting that DNA methylation may serve as an important molecular marker for cancer prevention, prognosis, and therapies [1,2,3]. Histone acetyltransferases (HATs) and histone deacetylases (HDACs) play essential roles in the epigenetic regulation of gene expression by determining the acetylation status of histone proteins, which determines whether chromatin has a “relaxed” or ”condensed” structure. Acetylation results in condensed structure and less active genes [4]. HDAC inhibitors (HDACis) exhibit antitumor effects by activating cell cycle arrest, inducing apoptosis and autophagy, inhibiting angiogenesis, and increasing the generation of reactive oxygen species to induce oxidative stress, which all contribute to cancer cell death [5,6].
Nutrition has been shown to mediate epigenetic mechanisms, and recent studies have demonstrated that both the quantity and quality of food intake are associated with aging and cancer incidence and prognosis. Moreover, nutrition is thought to be the most influential of all external environmental factors due to its ability to affect the transcriptional activity and expression of specific genes [1]. Natural products have received increasing attention in recent years as novel anticancer agents, and interest in the potential chemopreventive and therapeutic properties of food-derived compounds, including plant polyphenols, has increased tremendously. Several members of phytochemicals are able to inhibit tumour growth as well as carcinogenesis at many points, and are also potential natural therapeutic agents. They may inhibit the activation of several signalling pathways, such as PI3K/AKT, MAPK/ERK and JAK/STAT3, thereby ultimately inhibiting tumour growth and metastasis, and may also stimulate ROS-mediated apoptosis and autophagy [7,8,9,10]. Polyphenols have a full range of anti-tumour effects, including, in addition to the above, inhibition of angiogenesis and activation of the immune system [11].
Plant polyphenols can be found in many fruits and vegetables, including soy, turmeric, grapes, celery, apples, onions, parsley, bell peppers, green tea, and black pepper, and have been shown to possess chemopreventive activity [1]. Natural compounds found in plants have demonstrated potential HDACi activity, including trans-resveratrol found characteristically in grapes, red wine, blueberries, and peanuts as main active ingredients [6]. HDACis of both natural and synthetic origins are currently being evaluated in clinical trials to determine their antitumor efficacies and potential side effects. 7,12-Dimethylbenz[a]anthracene (DMBA) is a known carcinogen that is used as a general compound in in vitro studies focusing not only on tumour models, but also on epigenetic studies [12,13,14,15]. To study the effect of the carcinogenic compound DMBA on early gene expression modification, a 24 h treatment seems to be optimal in an animal model, as many genes involved in the cell regulation respond by this time point [16,17].
Our study aimed to explore whether the frequent consumption of aqueous extract of a fruit seed and peel extract rich in phytochemicals influences the expression levels of DNMT and HDAC genes, which are responsible for the epigenetic changes that affect tumour formation and prevention. Specifically, we tested whether an extract derived from fruit seeds, lyophilized shells, and dried red grapes, blackberries, blackcurrants, redcurrants, and rosehips under the brand name Fruit Café (ProVitamix, Budapest, Hungary), which contains 100–200 mg/portion/day of polyphenols/flavonoids, could prevent the early stages of tumour formation following carcinogenic DMBA exposure by modulating DNMT and HDAC mRNA levels. Detection of trans-resveratrol and its glucoside trans-piceid was also performed. Our study showed that the tested polyphenol-rich extract, which provides dietary levels of polyphenols, can effectively reduce the expression of DNMT and HDAC genes.

2. Materials and Methods

2.1. HPLC Measurements

Chemicals and reagents: The trans-resveratrol standard (99%) was purchased from Sigma-Aldrich Co. (Budapest, Hungary), the trans-piceid standard was purchased from Herbstandard Inc. (Chesterfield, MO, USA), acetic acid (96%) was obtained from Riedel-de Haën GmbH & Co. (Seelze, Germany) and methanol (HPLC grade) was acquired from Scharlau Chemie S.A. (Barcelona, Spain).
Standard solutions and sample preparation: The standards were dissolved in a small portion of ethanol and filled up with the eluent. The fruit extract samples were prepared in a coffee machine with tap water as it is described in “Treatments of animals” section to obtain 100 mL of solution per portion, filtrated by using Millex syringe filter (Millipore Kft., Budapest, Hungary) and injected. All standard solutions and fruit extract samples were stored in the dark place at 5 °C to avoid oxidative degradation and isomerisation of trans-resveratrol and trans-piceid to cis-configuration (Figure 1).
HPLC instrumentation and conditions: The system used for high-performance liquid chromatography (HPLC) consisted of a Gynkotek M 580 GT pump, a Rheodyne 8125 (20 μL loop) injector and a Gynkotek M 340S UV diode array detector (Gynkotek GmbH, Germering, Germany). A 250 × 4.6 mm column packed with 6 μm particle size C18 material has been used for the separations. A Chromeleon data management software (Dionex Corp., Sunnyvale, CA, USA) was used for the control of the equipment and for data evaluation. Quantization was carried out using peak areas method. A multistep gradient method was applied using methanol–water–acetic acid (10:90:1 v/v) mixture as solvent A and methanol–water–acetic acid (90:10:1 v/v) mixture as solvent B at a flow rate of 1.5 cm3 min−1. The gradient profile was 0.0–18.0 min from 0% to 40% B; 18.0–25.0 min from 40% to 100% B; 25.0–27.0 min 100% B. Chromatographic separations were monitored at 306 nm. Chromatographic peaks were identified by comparing retentions and UV spectra and MS spectra of the samples with those of the standard compounds. Quantisation was carried out by external standardisation.
MS instrumentation and conditions: MS (mass spectrometry) analysis was performed using a Finnigan AQA (Thermoquest, San Jose, CA, USA) mass spectrometer. The auxiliary and the curtain gas were nitrogen at the flow rate of 600 L/h. For HPLC-MS analysis, we used ESI (electrospray ionization) source, the probe temperature was 250 °C, the probe voltage was 3.5 kV. Spectra were recorded by 1.2 scan/s in the negative ion mode between m/z 10 and 700. The scan filter on the quadrupole analyser was 10 and 20 V. Finnigan Xcalibur (version: XCALI-97006) was used to acquire the mass spectra of the compounds.

2.2. Animals

Male CD1 mice (Charles River Laboratories International, Budapest, Hungary) were housed separately in polycarbonate cages and maintained in a 12:12 h light–dark cycle, provided with water and standard pellets ad libitum throughout the experiment. Four groups of 6-week-old (18 ± 2 g) male CD1 mice were used for this study, with six animals in each group.

2.3. Treatment of Animals

The negative control group (Control group) was provided with standard feed and tap water ad libitum. The positive control group (DMBA group) was provided with standard feed and tap water ad libitum, and 20 mg/kg body weight (bw) DMBA (Sigma-Aldrich, Budapest, Hungary), dissolved 0.2 mL corn oil, was administered intraperitoneally 24 h before cervical dislocation. The third group (FC group) received drinking water containing a human-equivalent dose of the fruit seed and peel extract for 28 days, in addition to ad libitum access to standard feed. The fourth group (FC + DMBA group) received drinking water containing a human-equivalent dose of the fruit seed and peel extract for 28 days, in addition to ad libitum access to standard feed, and 20 mg/kg bw DMBA, dissolved in 0.2 mL corn oil, was administered intraperitoneally 24 h before cervical dislocation (Table 1). The animals in first and third groups received 0.2 mL corn oil vehicle intraperitoneally. The fruit seed and peel extract contained lyophilized seeds, the skins of red grape, blackcurrant, redcurrant, rosehip, and black cherry, and fructose [13,14,18] commercialized under the brand name Fruit Café (ProVitamix, Budapest, Hungary). The extract was prepared in a regular high-pressure coffee from two components. One component is the seed extract and the other one is peel extract. A total of 60 doses from 1000 g of seed extract and 700 g of peel extract can be produced, and 8 mL of the 100 mL solution was dissolved in tap water to a final volume of 40 mL, which generated a daily dose for 12 mice, equivalent to the human dose [19].
Animals were autopsied after euthanasia was performed by cervical dislocation. All animals received humane care, and the experimental protocol received ethical approval.

2.4. Total RNA Isolation

During the autopsy, the liver and kidneys were collected from every animal and total mRNA was isolated using TRIzol reagent (MRTR118-20, NucleotestBio, Budapest, Hungary) according to the manufacturer’s protocol.
Tissue samples were homogenised with TRIzol reagent (1 mL per 100 mg tissue) using a Janke and Kunkel Ultra Turrax T25 stirrer (IKA-Werke, Staufen, Germany), and 100 µL of chloroform (Merck, Budapest, Hungary) was added to the TRIzol lysate and mixed thoroughly by shaking. After 5 min at room temperature, the samples were centrifuged at 12,000× g for 15 min at 4 °C, and the upper aqueous phase containing RNA was collected in a new Eppendorf tube.
Then, 250 µL of isopropanol (Merck, Budapest, Hungary) was added to the sample, mixed and kept at room temperature for 10 min before centrifugation at 12,000× g at 4 °C for 10 min. The supernatant was discarded and the pellet was washed with 70% ethanol (Merck, Budapest, Hungary) and then centrifuged at 7500× g at 4 °C for 5 min. The pellet was air-dried and RNase-free water (Merck, Budapest, Hungary) was added. Finally, the RNA was quantified with a MaestroNano (Maestrogen, Hsinchu City, Taiwan) spectrophotometer.

2.5. qRT-PCR

The assays were performed on the Roche 480 instrument (Roche, Budapest, Hungary) using the KAPA SYBR FAST One-Step qRT-PCR Master Mix Kit (Sigma-Aldrich, Budapest, Hungary). The amplifications were performed in 20 μL reaction volume, mixing 5 μL RNA target (100 ng) and 15 μL of master mix with forward and reverse primers (10 µL KAPA SYBR FASTqPCR Master Mix, 0.4 µL KAPA RT Mix, 0.4 µL dUTP, 0.4 µL primer (200 nM), 3.8 µL sterile double distilled water). The reactions were performed using the following thermal profile: 42 °C for 5 min for the reverse transcription step, a hot-start denaturation step of 95 °C for 3 min, followed by 45 cycles of 95 °C for 10 s (denaturation), 60 °C for 20 s (annealing/extension). The fluorogenic signal emitted during the annealing/extension step was read and analysed using the software. Immediately after amplification, a melting curve protocol was generated by increasing each cycle by 0.5 °C for 80 cycles of 10 s each, starting from the target temperature (55.0 °C).
The primary sequences of the housekeeping gene used as an internal control, hypoxanthine phosphoribosyltransferase 1 (HPRT1), and the genes of interest, DNMT1, DNMT3A, DNMT3B, HDAC2, HDAC3 and HDAC8, are listed in Table 2. Primers were designed using Primer Express™ software (Applied Biosystems, Budapest, Hungary) and synthesised by Integrated DNA Technologies (Bio-Sciences, Budapest, Hungary). The results were analysed using the relative quantification method (2-∆∆CT).

2.6. Statistical Analysis

The Kolmogorov–Smirnov test was used to verify the normality of the results. Means between groups were compared using analysis of variance (ANOVA). Statistical analyses were performed using IBM SPSS Statistics for Windows, Version 26.0 (Armonk, NY, USA). Significance was established at p < 0.05.

3. Results

After analysis of the fruit extract by HPLC, the calculated amount of trans-resveratrol (Figure 2) was 1.74 mg/L (SD 0.13) and that of trans-piceid (Figure 3) was 2.37 mg/L (SD 0.32). Therefore, the mean daily intake of trans-resveratrol was 5.8 μg, while the mean daily intake of trans-piceid was 7.9 μg for each mouse, respectively. Using the metabolic multiplier between humans and mice (12.3×), this would result in a human consuming 366.76 micrograms of trans-resveratrol and 499.55 micrograms of trans-piceid daily.
We tested the efficacy of a fruit seed and peel extract to attenuate HDAC and DNMT gene expression following the administration of the carcinogen DMBA in an animal model.
We measured the relative gene expression of HDAC2, HDAC3, and HDAC8 in both liver and kidney isolates. DMBA administration significantly increased the relative expression of HDAC2 in the liver of the DMBA group twofold compared to the Control group; however, the fruit seed and peel extract completely diminished the effects of DMBA (Figure 4). The relative gene expression pattern of HDAC3 in the liver was similar to that observed for HDAC2; however, gene expression of both genes was reduced threefold in the FC group compared with that in the Control group. No significant changes were observed for HDAC8 expression. A similar trend was observed in the kidney for all three genes (Figure 4).
In the liver, fruit and peel extract significantly reduced the expression of the genes tested not only in those elevated by DMBA, but also in the control groups. However, the most significant reduction occurred in the FC + DMBA groups. FC induced a more than tenfold, 3.5-fold and 3-fold decrease in the expression of DNMT1, DNMT3A and DNMT3B genes, respectively, compared to the DMBA groups.
In the kidneys, DMBA exposure significantly increased the gene expression of DNMT3A and DNMT3B compared with the control. The fruit seed and peel extract reduced this change in gene expression but less emphatically than in the liver (Figure 5).

4. Discussion

In our animal model, DMBA was used as a carcinogenic compound, and we analysed whether pre-treatment with a commercially available fruit seed and peel extract exerted chemopreventive and cellular regulatory function in an animal model. Our results revealed, in general, that the fruit and peel extract, which is rich in polyphenols and flavonoids, protected against DMBA-induced alterations in gene expression in the liver and kidneys. DMBA treatment significantly increased the expression of most examined DNMT and HDAC genes, whereas pre-treatment with the fruit seed and peel extract decreased the expression of these genes, even relative to the Control group.
Based on our HPLC measurements, the recommended daily intake of the fruit and peel extract contains trans-resveratrol and trans-piceid in amounts equivalent to the mean consumption in the adult Spanish population. This amount corresponds to 0.2 L of red wine for trans-resveratrol and 1 L of red wine for trans-piceid. This population in the lowest quartile consumes only a fraction of the mean [20]. Considering that resveratrol is mainly found in red wine, consumption of similar products tested could significantly increase resveratrol intake in the population without red wine consumption. The HPLC measurement also indicated that the animals received amounts of resveratrol close to the mean human intake. Similar animal studies carried out by us are very rare. The studies focus mainly on tolerance, toxicity, renal and hepatic damage and the effects of high doses in general [21].
Histone acetylation, which is regulated by HDAC activity [4], has been shown to modulate gene expression, and the post-transcriptional modifications of acetylation and methylation may play roles in cancer development by regulating the expression of tumour suppressor genes and oncogenes. Our results demonstrate that the fruit seed and peel extract significantly decreased HDAC2 and HDAC3 expression in both the liver and kidney compared with the Control group, which consumed only standard laboratory pellets, and with the DMBA-treated group. However, no significant changes in HDAC8 expression were observed in either the liver or kidney.
There may be a special case where DMBA combined with fruit and peel extract results in lower expression than fruit and peel extract alone. Such examples are shown in Figure 4 for HDAC3 in the liver and HDAC2 in the kidney. Similar observations have been made by other researchers, but this may be a gene- and tissue-dependent issue, and not a universal one. For example, Singhal and colleagues investigated the effect of oestrogen modification on DMBA carcinogenesis in the liver of ovariectomised rats. They determined that the expression of CYP1A1 and CYP1B1 was higher in the co-administration of oestrogen and DMBA than in the DMBA group. The expression of NQO1 was increased by DMBA, but this increase was more modest in the presence of DMBA and oestrogen together. For GSTM3, DMBA and oestrogen resulted in lower expression than DMBA or oestrogen alone [20].
Mirza et al. described results, similar to our findings, for the relative gene expression levels of DNMT1, DNMT3A, and DNMT3B measured by RT-PCR in breast cancer cells treated with multiple natural chemopreventive substances, such as EGCG, genistein, withaferin A, curcumin, resveratrol, and guggulsterone. These natural substances significantly decreased DNMT gene expression, suggesting potential chemopreventive activities. DNMTs are recognized as major enzymes involved in the somatic inheritance of DNA methylation, playing crucial roles in epigenome maintenance. The upregulation of the DNMT1 expression may induce the dissociation of p21WAF1 from PCNA, which may make p21WAF1 more vulnerable to ubiquitination and proteasomal degradation [22]. Supplementation with the fruit seed and peel extract in our experiment resulted in relatively low gene expression levels of DNMT1 and DMNT3A in both the kidneys and liver compared with the Control group and prevented increased gene expression following DMBA exposure, whereas DNMT3B only showed lower levels in the FC groups compared to the DMBA groups.
The chemopreventive effects of fruit seed and peel extracts, which contain polyphenols and flavonoids, have been demonstrated in several studies. Flavonoids, such as anthocyanin and luteolin, are abundant in many fruits and vegetables. Ursolic acid, a natural triterpenoid found in blueberries and cranberries, activates the nuclear factor-erythroid factor 2–related factor 2 (Nrf2) pathway and decreases the enzymatic activities of DNMTs and HDACs, leading to chemopreventive and antitumor activities [23,24,25].
Various studies have demonstrated that DNA methylation, which is regulated by the histone acetylation status, results in gene silencing in breast cancer cells. Several hypermethylated genes have been associated with gene silencing, such as the cell cycle inhibitor genes CDKN2A (p16) and RASSF1A, and the DNA repair gene BRCA1. The combination of sulforaphane (SFN) with the main polyphenol found in green tea, epigallocatechin-3-gallate (EGCG), can reactivate oestrogen receptor (ER)-α expression in ER-α-negative breast cancer cell lines, restoring sensitivity to antioestrogen treatment [26,27]. Therefore, the inhibition of HDAC and DNMT activities may provide new treatment options for patients with ER-α-negative breast cancer [23]. According to a recent study, the carcinogenic polycyclic aromatic hydrocarbons, such as benzofluorene and benzo (a) pyrene (BaP), can significantly increase the enzymatic levels of DNMT1l [28].
Recently, black raspberry-derived anthocyanins, a subclass of flavonoids, have been demonstrated to suppress the enzymatic activities and protein levels of DNMT1 and DNMT3B in multiple colon cancer cell lines, including HCT116, Caco-2, and SW480 cells leading to demethylation. The demethylation of promoters for cyclin-dependent kinase inhibitor 2A (CDKN2A) and secreted frizzled-related protein 2 (SFRP2), in addition to SFRP5 and Wnt inhibitory factor 1 (WIF1), which are upstream of the Wnt signaling pathway, results in the increased mRNA expression of these genes. The mRNA expression genes downstream of the Wnt pathway, including β-catenin and c-Myc, also decreased, resulting in reduced cell proliferation and increased apoptosis [29]. Resveratrol, an active ingredient found in red grapes, peanuts, and berries, has been linked to health and disease prevention due to reported cardioprotective, antioxidative, anti-inflammatory, and anticancer activities [26]. Resveratrol decreases DNMT1 and DNMT3B expression levels and modulates the aberrant expression profiles of microRNAs (miRNAs) in cancer cell lines and tumour tissues [30].
Trans-resveratrol can reduce the occurrence of Ras association domain family 1 isoform A (RASSF1A) hypermethylation by inhibiting DNMT activity in women with increased breast cancer risk [31,32]. Pterostilbene is a dimethyl ether derivative of resveratrol found in blueberries, grapes, and herbs, such as Pterocarpus indicus. By suppressing the activities of Sirtuin 1 (SIRT1) and DNMTs, resveratrol and pterostilbene can synergistically inhibit cell viability, induce apoptosis, and arrest the cell cycle in triple-negative breast cancer cells, inhibiting telomerase activity and histone H2AX expression [3,5]. In summary, DNMT and HDAC inhibitors target several pathways that contribute to cancer development [33].
Overall, it can be assumed that the increase in carcinogenic DMBA-induced expression of HDAC1, HDAC2, DNMT1, DNMT3A and DNMT3B genes tested was reduced in most cases by the fruit peel and seed extract tested. This finding is significant because normal dietary conditions were modelled in our studies. However, it provides the amount that already has a significant protective effect against many diseases [34,35].

5. Conclusions

The results of this study indicated that fruit and peel extract administered to mice at human-equivalent doses protected against the DMBA-induced upregulation of DNMT and HDAC genes, which was likely due to the chemopreventive effects of the various compounds found in fruit seed and peel extract, which is rich in polyphenols and flavonoids. Consumption of one serving of the fruit seeds and peel extracts tested does not exceed the regular daily intake of polyphenols, trans-resveratrol and trans-piceid. Although vast amounts of data are available in the literature associated with specific gene expression, relatively few research groups have examined the epigenetic effects of natural extracts in normal dietary intake level in animal models. Our results suggest that an extract derived from fruit peels and seeds provides effective protection against early gene expression changes of genes involved in epigenetic processes induced by the carcinogen DMBA.

Supplementary Materials

The following supporting information can be downloaded at: https://www.mdpi.com/article/10.3390/nu15081867/s1, Dataset: Original measurement data and calculations.

Author Contributions

Conceptualization, G.N., A.Z. and T.V.; methodology, G.N., A.Z. and T.V.; validation, L.B.R.; formal analysis, I.K. and Z.O.; investigation, G.N., A.Z., L.B.R., L.S., A.T. and R.M.; resources, T.V.; data curation, T.V.; writing—original draft preparation, G.N., A.Z. and T.V.; writing—review and editing, T.V. and Z.G.; visualization, Z.O. and G.G.; supervision, T.V.; project administration, L.B.R.; funding acquisition, T.V. All authors have read and agreed to the published version of the manuscript.

Funding

This research was funded by University of Pécs, EFOP 3.6.1-16.2016.00004. The APC was funded by University of Pécs.

Institutional Review Board Statement

The animal study protocol was approved by the Animal Welfare Committee of the University of Pécs issued the ethical license No. BA02/2000-79/2017.

Informed Consent Statement

Not applicable.

Data Availability Statement

The data presented in this study are available in this article and in the Supplementary Materials.

Acknowledgments

The authors would like to thank Csilla Egyed for editorial support with the manuscript and Zsuzsanna Brunnerné Bayer and Mónika Herczeg for laboratory work.

Conflicts of Interest

The authors declare no conflict of interest.

References

  1. Daniel, M.; Tollefsbol, T.O. Epigenetic linkage of aging, cancer and nutrition. J. Exp. Biol. 2015, 218, 59–70. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  2. Aldawsari, F.S.; Aguayo-Ortiz, R.; Kapilashrami, K.; Yoo, J.; Luo, M.; Medina-Franco, J.L.; Velázquez-Martínez, C.A. Resveratrol-salicylate derivatives as selective DNMT3 inhibitors and anticancer agents. J. Enzym. Inhib. Med. Chem. 2016, 31, 695–703. [Google Scholar] [CrossRef] [PubMed]
  3. Huang, Z.; Huang, Q.; Ji, L.; Wang, Y.; Qi, X.; Liu, L.; Liu, Z.; Lu, L. Epigenetic regulation of active Chinese herbal components for cancer prevention and treatment: A follow-up review. Pharmacol. Res. 2016, 114, 1–12. [Google Scholar] [CrossRef] [PubMed]
  4. Shen, L.; Orillion, A.; Pili, R. Histone deacetylase inhibitors as immunomodulators in cancer therapeutics. Epigenomic 2016, 8, 415–428. [Google Scholar] [CrossRef]
  5. Kala, R.; Shah, H.N.; Martin, S.L.; Tollefsbol, T.O. Epigenetic-based combinatorial resveratrol and pterostilbene alters DNA damage response by affecting SIRT1 and DNMT enzyme expression, including SIRT1-dependent γ-H2AX and telomerase regulation in triple-negative breast cancer. BMC Cancer 2015, 15, 672. [Google Scholar] [CrossRef] [Green Version]
  6. Singh, A.K.; Bishayee, A.; Pandey, A.K. Targeting histone deacetylases with natural and synthetic agents: An emerging anticancer strategy. Nutrients 2018, 10, 731. [Google Scholar] [CrossRef] [Green Version]
  7. Arimoto-Kobayashi, S.; Sasaki, K.; Hida, R.; Miyake, N.; Fujii, N.; Saiki, Y.; Daimaru, K.; Nakashima, H.; Kubo, T.; Kiura, K. Chemopreventive effects and anti-tumorigenic mechanisms of 2, 6-dimethoxy-1, 4-benzoquinone, a constituent of Vitis coignetiae Pulliat (crimson glory vine, known as yamabudo in Japan), toward 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (NNK)-induced lung tumorigenesis in A/J mice. Food Chem. Toxicol. 2021, 154, 112319. [Google Scholar] [CrossRef]
  8. Kim, H.G.; Sung, N.Y.; Kim, J.H.; Cho, J.Y. In vitro anti-cancer effects of beauvericin through inhibition of actin polymerization and Src phosphorylation. Phytomedicine 2023, 109, 154573. [Google Scholar] [CrossRef]
  9. Huang, C.F.; Hung, T.W.; Yang, S.F.; Tsai, Y.L.; Yang, J.T.; Lin, C.L.; Hsieh, Y.H. Asiatic acid from centella asiatica exert anti-invasive ability in human renal cancer cells by modulation of ERK/p38MAPK-mediated MMP15 expression. Phytomedicine 2022, 100, 154036. [Google Scholar] [CrossRef]
  10. Peng, Y.; Zhou, T.; Wang, S.; Bahetjan, Y.; Li, X.; Yang, X. Dehydrocostus lactone inhibits the proliferation of esophageal cancer cells in vivo and in vitro through ROS-mediated apoptosis and autophagy. Food Chem. Toxicol. 2022, 170, 113453. [Google Scholar] [CrossRef]
  11. Zhou, Y.; Yu, Y.; Lv, H.; Zhang, H.; Liang, T.; Zhou, G.; Huang, L.; Tian, Y.; Liang, W. Apigenin in cancer therapy: From mechanism of action to nano-therapeutic agent. Food Chem. Toxicol. 2022, 168, 113385. [Google Scholar] [CrossRef] [PubMed]
  12. Yang, A.Y.; Lee, J.H.; Shu, L.; Zhang, C.; Su, Z.-Y.; Lu, Y.; Huang, M.-T.; Ramirez, C.; Pung, D.; Huang, Y.; et al. Genome-wide analysis of DNA methylation in UVB-and DMBA/TPA-induced mouse skin cancer models. Life Sci. 2014, 113, 45–54. [Google Scholar] [CrossRef] [PubMed]
  13. Tomesz, A.; Szabo, L.; Molnar, R.; Deutsch, A.; Darago, R.; Raposa, B.L.; Nowrasteh, G.; Varjas, T.; Nemeth, B.; Orsos, Z.; et al. Changes in miR-124-1, miR-212, miR-132, miR-134, and miR-155 expression patterns after 7, 12-dimethylbenz (a) anthracene treatment in CBA/Ca mice. Cells 2022, 11, 1020. [Google Scholar] [CrossRef]
  14. Molnar, R.; Szabo, L.; Tomesz, A.; Deutsch, A.; Darago, R.; Raposa, B.L.; Nowrasteh, G.; Varjas, T.; Nemeth, B.; Orsos, Z.; et al. The chemopreventive effects of polyphenols and coffee, based upon a DMBA mouse model with microRNA and mTOR gene expression biomarkers. Cells 2022, 11, 1300. [Google Scholar] [CrossRef]
  15. Chen, Y.K.; Hsue, S.S.; Lin, L.M. Survivin expression is regulated by an epigenetic mechanism for DMBA-induced hamster buccal-pouch squamous-cell carcinomas. Arch. Oral Biol. 2005, 50, 593–598. [Google Scholar] [CrossRef]
  16. Singhal, R.; Shankar, K.; Badger, T.M.; Ronis, M.J. Estrogenic status modulates aryl hydrocarbon receptor—Mediated hepatic gene expression and carcinogenicity. Carcinogenesis 2008, 29, 227–236. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  17. Larsen, M.C.; Almeldin, A.; Tong, T.; Rondelli, C.M.; Maguire, M.; Jaskula-Sztul, R.; Jefcoate, C.R. Cytochrome P4501B1 in bone marrow is co-expressed with key markers of mesenchymal stem cells. BMS2 cell line models PAH disruption of bone marrow niche development functions. Toxicol. Appl. Pharm. 2020, 401, 115111. [Google Scholar] [CrossRef]
  18. Szabó, L.; Kiss, I.; Orsós, Z.; Ember, I. Effect of Nano-Fruit-Café on the expression of oncogenes and tumor suppressor genes. Anticancer Res. 2008, 28, 3274. [Google Scholar]
  19. Reagan-Shaw, S.; Nihal, M.; Ahmad, N. Dose translation from animal to human studies revisited. FASEB J. 2007, 22, 659–661. [Google Scholar] [CrossRef] [Green Version]
  20. Zamora-Ros, R.; Andres-Lacueva, C.; Lamuela-Raventós, R.M.; Berenguer, T.; Jakszyn, P.; Martínez, C.; Sánchez, M.J.; Navarro, C.; Chirlaque, M.D.; Tormo, M.-J.; et al. Concentrations of resveratrol and derivatives in foods and estimation of dietary intake in a Spanish population: European Prospective Investigation into Cancer and Nutrition (EPIC)-Spain cohort. Brit. J. Nutr. 2008, 100, 188–196. [Google Scholar] [CrossRef] [Green Version]
  21. Shaito, A.; Posadino, A.M.; Younes, N.; Hasan, H.; Halabi, S.; Alhababi, D.; Al-Mohannadi, A.; Abdel-Rahman, M.W.; Eid, A.H.; Nasrallah, G.K.; et al. Potential adverse effects of resveratrol: A literature review. Int. J. Mol. Sci. 2020, 21, 2084. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  22. Mirza, S.; Sharma, G.; Parshad, R.; Gupta, S.D.; Pandya, P.; Ralhan, R. Expression of DNA methyltransferases in breast cancer patients and to analyze the effect of natural compounds on DNA methyltransferases and associated proteins. J. Breast Cancer 2013, 16, 23–31. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  23. Fan, J.; Yin, W.-J.; Lu, J.-S.; Wang, L.; Wu, J.; Wu, F.-Y.; Di, G.-H.; Shen, Z.-Z.; Shao, Z.-M. ERα negative breast cancer cells restore response to endocrine therapy by combination treatment with both HDAC inhibitor and DNMT inhibitor. J. Cancer Res. Clin. 2008, 134, 883–890. [Google Scholar] [CrossRef]
  24. Kim, H.; Ramirez, C.N.; Su, Z.-Y.; Kong, A.-N.T. Epigenetic modifications of triterpenoid ursolic acid in activating Nrf2 and blocking cellular transformation of mouse epidermal cells. J. Nutr. Biochem. 2016, 33, 54–62. [Google Scholar] [CrossRef] [Green Version]
  25. Kuo, H.-C.D.; Wu, R.; Li, S.; Yang, A.Y.; Kong, A.-N. Anthocyanin Delphinidin Prevents Neoplastic Transformation of Mouse Skin JB6 P+ Cells: Epigenetic Re-activation of Nrf2-ARE Pathway. AAPS J. 2019, 21, 83. [Google Scholar] [CrossRef] [PubMed]
  26. Kumar, A.; Dhar, S.; Rimando, A.M.; Lage, J.M.; Lewin, J.R.; Zhang, X.; Levenson, A.S. Epigenetic potential of resveratrol and analogs in preclinical models of prostate cancer. Ann. N. Y. Acad. Sci. 2015, 1348, 1–9. [Google Scholar] [CrossRef] [PubMed]
  27. Basse, C.; Arock, M. The increasing roles of epigenetics in breast cancer: Implications for pathogenicity, biomarkers, prevention, and treatment. Int. J. Cancer 2015, 137, 2785–2794. [Google Scholar] [CrossRef]
  28. Olguín-Reyes, S.R.; Hernández-Ojeda, S.L.; Govezensky, T.; Camacho-Carranza, R.; Espinosa-Aguirre, J.J. Sub-acute exposure effect of selected polycyclic aromatic hydrocarbons on protein levels of epigenetic modifiers in non-cancerous hepatic model. Biomed. Res. 2018, 29, 342. [Google Scholar] [CrossRef] [Green Version]
  29. Wang, L.-S.; Kuo, C.-T.; Cho, S.-J.; Seguin, C.; Siddiqui, J.; Stoner, K.; Weng, Y.-I.; Huang, T.H.-M.; Tichelaar, J.; Yearsley, M.; et al. Black raspberry-derived anthocyanins demethylate tumor suppressor genes through the inhibition of DNMT1 and DNMT3B in colon cancer cells. Nutr. Cancer 2013, 65, 118–125. [Google Scholar] [CrossRef] [Green Version]
  30. Qin, W.; Zhang, K.; Clarke, K.; Weiland, T.; Sauter, E.R. Methylation and miRNA effects of resveratrol on mammary tumors vs. normal tissue. Nutr. Cancer 2014, 66, 270–277. [Google Scholar] [CrossRef]
  31. Gerhauser, C. Cancer chemoprevention and nutri-epigenetics: State of the art and future challenges. Top. Curr. Chem. 2013, 329, 73–132. [Google Scholar] [CrossRef] [PubMed]
  32. Zhu, W.; Qin, W.; Zhang, K.; Rottinghaus, G.E.; Chen, Y.-C.; Kliethermes, B.; Sauter, E.R. Trans-resveratrol alters mammary promoter hypermethylation in women at increased risk for breast cancer. Nutr. Cancer 2012, 64, 393–400. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  33. Yuan, Z.; Chen, S.; Gao, C.; Dai, Q.; Zhang, C.; Sun, Q.; Lin, J.-S.; Guo, C.; Chen, Y.; Jiang, Y. Development of a versatile DNMT and HDAC inhibitor C02S modulating multiple cancer hallmarks for breast cancer therapy. Bioorg. Chem. 2019, 87, 200–208. [Google Scholar] [CrossRef]
  34. Del Bo, C.; Bernardi, S.; Marino, M.; Porrini, M.; Tucci, M.; Guglielmetti, S.; Cherubini, A.; Carrieri, B.; Kirkup, B.; Kroon, P.; et al. Systematic review on polyphenol intake and health outcomes: Is there sufficient evidence to define a health-promoting polyphenol-rich dietary pattern? Nutrients 2019, 11, 1355. [Google Scholar] [CrossRef] [PubMed] [Green Version]
  35. El Khawand, T.; Courtois, A.; Valls, J.; Richard, T.; Krisa, S. A review of dietary stilbenes: Sources and bioavailability. Phytochem. Rev. 2018, 17, 1007–1029. [Google Scholar] [CrossRef]
Nutrients 15 01867 g001 550
Figure 1. Structure of trans-resveratrol and trans-piceid.
Figure 1. Structure of trans-resveratrol and trans-piceid.
Nutrients 15 01867 g001
Nutrients 15 01867 g002 550
Figure 2. ESI negative ion MS spectra of trans-resveratrol. The negative polarised quasi-molecular ion derived from trans-resveratrol was detected at 227.0 m/z (ESI = electrospray ionization, MS = mass spectrometry).
Figure 2. ESI negative ion MS spectra of trans-resveratrol. The negative polarised quasi-molecular ion derived from trans-resveratrol was detected at 227.0 m/z (ESI = electrospray ionization, MS = mass spectrometry).
Nutrients 15 01867 g002
Nutrients 15 01867 g003 550
Figure 3. ESI negative ion MS spectra of quasi-molecular trans-piceid at 388.7 m/z. The peak of trans-resveratrol, which was partially presented in native form and generated through the fragmentation of piceid precursor as well, was detected at 226.7 m/z (ESI = electrospray ionization, MS = mass spectrometry).
Figure 3. ESI negative ion MS spectra of quasi-molecular trans-piceid at 388.7 m/z. The peak of trans-resveratrol, which was partially presented in native form and generated through the fragmentation of piceid precursor as well, was detected at 226.7 m/z (ESI = electrospray ionization, MS = mass spectrometry).
Nutrients 15 01867 g003
Nutrients 15 01867 g004 550
Figure 4. Relative gene expression of HDAC genes. The relative gene expression levels of histone deacetylases at the mRNA level in the liver and kidney of experimental animals relative to the mRNA levels of HPRT1 (DMBA: 7,12-dimethylbenz(a)anthracene, HPcFE: fruit seed and peel extract); * significantly different from DMBA-treated mice (p < 0.05). Error bars represent the standard deviation.
Figure 4. Relative gene expression of HDAC genes. The relative gene expression levels of histone deacetylases at the mRNA level in the liver and kidney of experimental animals relative to the mRNA levels of HPRT1 (DMBA: 7,12-dimethylbenz(a)anthracene, HPcFE: fruit seed and peel extract); * significantly different from DMBA-treated mice (p < 0.05). Error bars represent the standard deviation.
Nutrients 15 01867 g004
Nutrients 15 01867 g005 550
Figure 5. Relative gene expression of DNMT genes. Relative gene expression of DNA methyltransferases at the mRNA level in the liver and kidney of experimental animals compared with the mRNA level of HPRT1 (DMBA: 7,12-dimethylbenz(a)anthracene, HPcFE: Fruit seed and peel extract); * significantly different from DMBA-treated mice (p < 0.05). Error bars represent the standard deviation.
Figure 5. Relative gene expression of DNMT genes. Relative gene expression of DNA methyltransferases at the mRNA level in the liver and kidney of experimental animals compared with the mRNA level of HPRT1 (DMBA: 7,12-dimethylbenz(a)anthracene, HPcFE: Fruit seed and peel extract); * significantly different from DMBA-treated mice (p < 0.05). Error bars represent the standard deviation.
Nutrients 15 01867 g005
Table
Table 1. Treatment program.
Table 1. Treatment program.
Fluid Consumption (for 28 Days)Carcinogenic Exposure (on Day 27) **
Group 1ControlTap waterad libitumVehicle
Group 2DMBATap waterad libitumDMBA20 mg/kg bw
Group 3FCFruit seed and peel extractHuman-equivalent dose *Vehicle
Group 4FC + DMBAFruit seed and peel extractHuman-equivalent dose *DMBA20 mg/kg bw
The experimental animals received ad libitum water after full consumption of the polyphenolic fruit seed and peel extract (FC; *) and purified corn oil as the vehicle or DMBA (7,12-dimethylbenz(a)anthracene) dissolved in purified corn oil was administered intraperitoneally 24 h prior to cervical dislocation and dissection (**).
Table
Table 2. PCR primers.
Table 2. PCR primers.
Gene NameForward PrimerReverse Primer
DNA methyltransferase 1
(DNMT1)		F-AAGAATGGTGTTGTCTACCGAC R-CATCCAGGTTGCTCCCCTTG
DNA methyltransferase 3A
(DNMT3A)		F-GAGGGAACTGAGACCCCACR-CTGGAAGGTGAGTCTTGGCA
DNA methyltransferase 3B
(DNMT3B)		F-AGCGGGTATGAGGAGTGCATR-GGGAGCATCCTTCGTGTCTG
Histone deacetylase 2
(HDAC2)		F-GGAGGAGGCTACACAATCCG R-TCTGGAGTGTTCTGGTTTGTCA
Histone deacetylase 3
(HDAC3)		F-GCCAAGACCGTGGCGTATT R-GTCCAGCTCCATAGTGGAAGT
Histone deacetylase 8
(HDAC8)		F-ACTATTGCCGGAGATCCAATGTR-CCTCCTAAAATCAGAGTTGCCAG
Hypoxanthine phosphoribo-syltransferase 1 (HPRT1)F-TCAGTCAACGGGGGACATAAAR-GGGGCTGTACTGCTTAACCAG
Sequences of primers used for qRT-PCR are listed.
Disclaimer/Publisher’s Note: The statements, opinions and data contained in all publications are solely those of the individual author(s) and contributor(s) and not of MDPI and/or the editor(s). MDPI and/or the editor(s) disclaim responsibility for any injury to people or property resulting from any ideas, methods, instructions or products referred to in the content.

Share and Cite

MDPI and ACS Style

Nowrasteh, G.; Zand, A.; Raposa, L.B.; Szabó, L.; Tomesz, A.; Molnár, R.; Kiss, I.; Orsós, Z.; Gerencsér, G.; Gyöngyi, Z.; et al. Fruit Extract, Rich in Polyphenols and Flavonoids, Modifies the Expression of DNMT and HDAC Genes Involved in Epigenetic Processes. Nutrients 2023, 15, 1867. https://doi.org/10.3390/nu15081867

AMA Style

Nowrasteh G, Zand A, Raposa LB, Szabó L, Tomesz A, Molnár R, Kiss I, Orsós Z, Gerencsér G, Gyöngyi Z, et al. Fruit Extract, Rich in Polyphenols and Flavonoids, Modifies the Expression of DNMT and HDAC Genes Involved in Epigenetic Processes. Nutrients. 2023; 15(8):1867. https://doi.org/10.3390/nu15081867

Chicago/Turabian Style

Nowrasteh, Ghodratollah, Afshin Zand, László Bence Raposa, László Szabó, András Tomesz, Richárd Molnár, István Kiss, Zsuzsa Orsós, Gellért Gerencsér, Zoltán Gyöngyi, and et al. 2023. "Fruit Extract, Rich in Polyphenols and Flavonoids, Modifies the Expression of DNMT and HDAC Genes Involved in Epigenetic Processes" Nutrients 15, no. 8: 1867. https://doi.org/10.3390/nu15081867

APA Style

Nowrasteh, G., Zand, A., Raposa, L. B., Szabó, L., Tomesz, A., Molnár, R., Kiss, I., Orsós, Z., Gerencsér, G., Gyöngyi, Z., & Varjas, T. (2023). Fruit Extract, Rich in Polyphenols and Flavonoids, Modifies the Expression of DNMT and HDAC Genes Involved in Epigenetic Processes. Nutrients, 15(8), 1867. https://doi.org/10.3390/nu15081867

Note that from the first issue of 2016, this journal uses article numbers instead of page numbers. See further details here.

Article Metrics

Back to TopTop