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Open AccessArticle

Mapping Crop Calendar Events and Phenology-Related Metrics at the Parcel Level by Object-Based Image Analysis (OBIA) of MODIS-NDVI Time-Series: A Case Study in Central California

Department of Crop Protection, Institute for Sustainable Agriculture (IAS), Spanish National Research Council (CSIC), 14004 Córdoba, Spain
Department of Environmental Systems Sciences, Institute of Agricultural Sciences, Swiss Federal Institute of Technology, ETH Zürich, 8092 Zürich, Switzerland
Department of Plant Sciences, University of California Davis, Davis, CA 95616, USA
Department of Plant Protection, Institute of Agricultural Sciences (ICA), Spanish National Research Council (CSIC), 28006 Madrid, Spain
Author to whom correspondence should be addressed.
Remote Sens. 2018, 10(11), 1745;
Received: 18 September 2018 / Revised: 1 November 2018 / Accepted: 2 November 2018 / Published: 6 November 2018
(This article belongs to the Special Issue Land Surface Phenology )
Remote sensing technology allows monitoring the progress of vegetation and crop phenology in large regions. Seasonal vegetation trends are commonly estimated from high temporal resolution but coarse spatial resolution satellite imagery, e.g., from MODIS-NDVI (Moderate Resolution Imaging Spectroradiometer—Normalized Difference Vegetation Index) time-series, which has usually limited their application to scenarios with few land uses or crops covering areas larger than actual parcel sizes. As an alternative, this paper proposes a general and robust procedure to map crop phenology at the level of individual crop parcels, and validates its feasibility in a complex and diverse cropland area located in central California. A first calibration phase consisted of evaluating the three curve-fitting models implemented in the TIMESAT software (i.e., asymmetric Gaussian (AG), double logistic (DL), and adaptive Savitzky–Golay (SG) filtering) and reporting the model and its settings that best adjusted to the MODIS-NDVI profile of each crop studied. Next, based on the selected crop-specific models and with a crop map previously obtained from ASTER (Advanced Spaceborne Thermal Emission and Reflection Radiometer) multi-temporal images, the procedure mapped four crop calendar events (i.e., start, end, middle, and length of the season) and five phenology-related metrics (i.e., base, maximum, amplitude, derivatives, and integrals of the NDVI values) of the study region by object-based image analysis (OBIA) of the MODIS-NDVI time-series. To mitigate the impact of mixed pixels, the OBIA procedure was designed to automatically apply a restrictive criterion based on the coverage of MODIS-NDVI pixels in each crop parcel: (1) using only the MODIS-NDVI pixels that were placed 100% within each crop parcel (i.e., “pure” pixels); or (2) if no “pure” pixels exist in any crop parcel, using only pixels with coverage percentages greater than 50%, and in such cases, reporting the mixing percentage in the output file. The calibration phase showed that the performance of the SG filtering was superior in most crops, with the exception of rice, while the AG model was intermediate in all of the cases. Differences between the dates of the start and end of the season that were observed in 120 ground-truth fields and the ones estimated by the crop-specific models were in a range of 11 days (for the corn fields) and 22 days (for the vineyard fields) on average. The OBIA procedure was also validated in 240 independent parcels with “pure” MODIS-NDVI pixels, reporting 89% and 82% of accuracy when mapping the start and end of the season, respectively. Our results revealed different growth patterns of the studied crops, especially of the crop calendar events of herbaceous (i.e., corn, rice, sunflower, and tomato) and woody crops (i.e., almond, walnut, and vineyard), of the NDVI derivatives of rice and the other studied herbaceous crops, and of the NDVI integrals of vineyard and the other studied woody crops. The resulting maps and tables provide valuable geospatial information for every parcel over time with several applications in cropland management, irrigation scheduling, and ecosystem modeling. View Full-Text
Keywords: crop phenology; cropland data layer; curve-fitting models; TIMESAT; seasonality imagery crop phenology; cropland data layer; curve-fitting models; TIMESAT; seasonality imagery
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MDPI and ACS Style

De Castro, A.I.; Six, J.; Plant, R.E.; Peña, J.M. Mapping Crop Calendar Events and Phenology-Related Metrics at the Parcel Level by Object-Based Image Analysis (OBIA) of MODIS-NDVI Time-Series: A Case Study in Central California. Remote Sens. 2018, 10, 1745.

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