Determinants of Senecavirus A Pathogenesis: From Viral Genome to ANTXR1, Immunity, and Programmed Cell Death
Abstract
1. Introduction
2. Roles of Viral Factors in the Pathogenesis of SVA
2.1. Viral Genome RNA Structure Is Vital for the Replication of SVA
2.2. Genetic Evolution and Recombination Alters the Infectious of SVA
3. ANTXR1 Mediates the Cellular Tropism and Pathogenesis of SVA
4. The Interplay Between SVA and Host Immunity During Infection
4.1. The Host Antiviral Immune Response Restricts SVA Infection
4.2. SVA Antagonizes the Antiviral Immune Response During Infection
4.3. The Host Adaptive Immune Response During SVA Infection
5. Reprogramming of Multiple Cell Death Processes Underlies SVA Pathogenesis
5.1. SVA Modulates Cell Autophagy Process
5.2. SVA Modulates Programmed Cell Apoptosis Process
5.3. SVA Modulates Programmed Cell Pyroptosis Process
6. Conclusions and Future Prospects
Author Contributions
Funding
Institutional Review Board Statement
Informed Consent Statement
Data Availability Statement
Acknowledgments
Conflicts of Interest
Abbreviations
| SVA | Senecavirus A |
| SAVD | Senecavirus-associated vesicular disease |
| ORF | open reading frame |
| UTR | untranslated regions |
| IRES | internal ribosome entry site |
| ANTXR1 | anthrax toxin receptor 1 |
| VPg | viral protein covalently linked to the 5′ end of viral RNA genome |
| eIF | eukaryotic initiation factor |
| SL | stem-loop structure |
| IFN | Interferon |
| RLRs | RIG-I-like receptors |
| ISGs | Interferon-stimulated genes |
| ZAP | zinc-finger antiviral protein |
| CH25H | cholesterol-25-hydroxylase |
| hnRNP | heterogeneous nuclear ribonucleoprotein |
| HCC | hepatocellular carcinoma |
| Stu | swine turbinate |
| ER | endoplasmic reticulum |
| GSDM | Gasdermin |
| vWA | von Willebrand factor A |
| CavME | caveolae-mediated endocytosis |
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| Strain | Year | Location of Detection | Proposed Parental Lineages | Genomic Breakpoints | Detection Methods | References |
|---|---|---|---|---|---|---|
| HeN-1/2018 | 2018 | China | USA/IA44952/2015 (Major) USA/IN_Purdue_4885/2015 (Minor) | VP4 (partial)-VP2-VP3 (partial) | RDP4, SimPlot | [39] |
| seHN-3-2/2024 | 2024 | China | USA/IA09-34037/2009 (Major) Canada/MB/NCFAD-104-9/2015 (Minor) | VP2 (partial)-VP3-VP1-2A-2B (partial) | RDP4, SimPlot | [40] |
| SVA/BRA/PR/446/22 | 2022 | Brazil | SVA/BRA/GO/236/21 (Major) SVA/BRA/PR/458/22 (Minor) | VP2 (partial)-VP3-VP1 (partial) | RDP5, SimPlot | [41] |
| SVA/BRA/PR/363/21 | 2021 | Brazil | SVA/BRA/PR/384/22 (Major) SVA/BRA/PR/362/21 (Minor) | 2B(partial)-2C-3A-3B-3C | RDP5, SimPlot | [41] |
| SVA/BRA/MT/11/19 | 2019 | Brazil | SVA_Brazil_949_22 (Major) SVA/BRA/MT/39/19 (Minor) | VP2 (partial)-VP3-VP1 (partial) | RDP5, SimPlot | [41] |
| SVA/BRA/PR/595/22 | 2022 | Brazil | SVA/BRA/GO/462/22 (Major) SVA/BRA/PR/587/22 (Minor) | 2B(partial)-2C-3A-3B-3C (partial) | RDP5, SimPlot | [41] |
| SVA/BRA/PR/490/22 | 2022 | Brazil | SVA/BRA/PR/489/22 (Major) SVA/BRA/PR/431/22 (Minor) | VP2 (partial)-VP3-VP1 (partial) | RDP5, SimPlot | [41] |
| SVA-CH-SDGT-2017 | 2017 | China | USA/IA44952/2015-P1 (Major) CH-GDLZ01-2017 (Minor) | VP2 (partial)-VP3(partial) | RDP4 | [42] |
| CH-GDSG-2018-3 | 2018 | China | CHhb2017 (Major) HeNKF-1 (Minor) | VP2 (partial)-VP3(partial) VP3 (partial)-VP1(partial) | SimPlot | [43] |
| SVA/Canada/ON/FMA-028-9F/2016 | 2016 | Canada | SVA/Canada/ON/FMA-025-2C/2016 (Major) SVA/Canada/ON/FMA-029-2D/2016 (Minor) | VP1(partial)-2A-2B-2C-3A-3B-3C-3D (partial) | RDP5 | [5] |
| 11-55910-3 | 2011 | Canada | USA/MN99-29256/1999 (Major) SVA/Canada/MB/NCFAD-104-6/2015 (Minor) | 5′UTR(partial)-VP4-VP2-VP3-VP1(partial) | RDP5 | [5] |
| USA/HI13-007758/2013 | 2013 | USA | USA/IA09-34037/2009 (Major) SVA/Canada/MB/NCFAD-104-9/2015 (Minor) | VP2(partial)-VP3-VP1-2A-2B (partial) | RDP5 | [5] |
| USA/IL01-84124/2001 | 2001 | USA | USA/LA97-98061/1997 (Major) USA/TN06-00310/2006 (Minor) | VP1(partial)-2A-2B-2C (partial) | RDP5 | [5] |
| SVA/CHN/10/2017 | 2017 | China | SVA/CHN/11/2017 (Major) SVA/CHN/01/2017 (Minor) | 2C(partial)-3A-3B-3C (partial) | SplitsTree, RDP4, RDP5 | [5,44,45] |
| CH-GDJY-2018 | 2018 | China | SVA/CHN/07/2017 (Major) GD-ZYY02-2018 (Minor) | 2C(partial)-3A-3B-3C-3D (partial) | SplitsTree, SimPlot, RDP4, RDP5 | [5,44] |
| CH-GD-2017-2 | 2017 | China | CH-GD-2017-1 (Major) CH-HN-2017 (Minor) | VP1(partial)-2A-2B-2C (partial) | SplitsTree, RDP4, RDP5 | [5,44] |
| HeNNY-1/2018 | 2018 | China | AH02-CH-2017 (Major) HeNZMD-1/2018 (Minor) | 2C(partial)-3A-3B-3C (partial) | RDP4, SimPlot | [45] |
| Host Cell Protein | Cleavage Site | Activity | Effect | References |
|---|---|---|---|---|
| cGAS | GAWK138LQTV (porcine) | Direct cleavage | Immune evasion | [78] |
| RIG-I | - | Degrade via the caspase pathway/Deubiquitinate of K63-linked polyubiquitin | Immune evasion | [79,80] |
| TBK1 | - | Deubiquitinate of K48-linked polyubiquitin | Immune evasion | [80] |
| TRAF3 | - | Deubiquitinate of K63-linked polyubiquitin | Immune evasion | [80] |
| MAVS | VQETQ148APESPG | Direct cleavage | Immune evasion | [81] |
| TRIF | IRTLQ159SNLGCL | Direct cleavage | Immune evasion | [81] |
| TANK | ME272FRDNPGNFVKTEETLFEIQ291G | Direct cleavage | Immune evasion | [81] |
| IRF3 and IRF7 | - | Degradation by its protease activity | Immune evasion | [82] |
| STAT1 | PMEL693D694GPKG | Direct cleavage | Immune evasion | [83] |
| STAT2 | DELQ707QPL/LESV754L755E756S757TLE (human)/PMLQ758STL (porcine) | Direct cleavage | Immune evasion | [83] |
| HDAC4 | LLEQ599QRIH | Direct cleavage/degrade via the caspase pathway | Immune evasion/promote replication | [84] |
| DCP1A | MMQ343AVKT | Direct cleavage | Promote replication | [85] |
| GSDMA | GLQG187S188INHKE | Direct cleavage | Promote replication | [86] |
| GSDMD | LQ193GQ……FQ277SD (porcine) | Direct cleavage | Promote replication | [87] |
| pro-IL-1β | ECK123L124QDK (porcine) | Direct cleavage | Promote inflammatory response | [88] |
| DHX30 | Q220 (porcine) | Direct cleavage | Promote replication | [89] |
| DDX21 | - | Degrade via the caspase pathway | Promote replication | [90] |
| PABPC1 | Q437 | Direct cleavage | Promote replication | [91] |
| nucleolin | Q545 | Direct cleavage | Promote replication | [92] |
| HnRNP K | YEPQ364GGSG | Direct cleavage | Promote replication | [93] |
| HnRNP A1 | - | Degrade via the proteasome pathway | Promote replication | [94] |
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Share and Cite
Zhang, X.; Wang, S.; Lu, P.; Zeng, R.; Li, G.; Li, C.; Li, Y.; Li, X.; Song, J.; Zhao, P.; et al. Determinants of Senecavirus A Pathogenesis: From Viral Genome to ANTXR1, Immunity, and Programmed Cell Death. Viruses 2026, 18, 922. https://doi.org/10.3390/v18080922
Zhang X, Wang S, Lu P, Zeng R, Li G, Li C, Li Y, Li X, Song J, Zhao P, et al. Determinants of Senecavirus A Pathogenesis: From Viral Genome to ANTXR1, Immunity, and Programmed Cell Death. Viruses. 2026; 18(8):922. https://doi.org/10.3390/v18080922
Chicago/Turabian StyleZhang, Xiaozhan, Siyu Wang, Ping Lu, Runfan Zeng, Guoyang Li, Changyao Li, Yiting Li, Xiuqing Li, Jinxing Song, Pandeng Zhao, and et al. 2026. "Determinants of Senecavirus A Pathogenesis: From Viral Genome to ANTXR1, Immunity, and Programmed Cell Death" Viruses 18, no. 8: 922. https://doi.org/10.3390/v18080922
APA StyleZhang, X., Wang, S., Lu, P., Zeng, R., Li, G., Li, C., Li, Y., Li, X., Song, J., Zhao, P., Guo, Y., Bian, C., Yang, D., & Yan, X. (2026). Determinants of Senecavirus A Pathogenesis: From Viral Genome to ANTXR1, Immunity, and Programmed Cell Death. Viruses, 18(8), 922. https://doi.org/10.3390/v18080922

