An NS1-F161L Substitution Determines Host-Driven Virulence Enhancement of H5N6 Avian Influenza Virus in Ducks
Abstract
1. Introduction
2. Materials and Methods
2.1. Ethics Statements
2.2. Animals, Cells and Virus
2.3. Phylogenetic Analysis
2.4. Virus Titration and Growth Curve
2.5. Viral Load Quantification
2.6. Serial Passage of WH0109 Virus in DEF Cells and SPF Ducks
2.7. SNP Sequencing
2.8. Construction of High-Frequency Point-Mutated Viruses and Rescue of Recombinant Viruses
2.9. Pathogenicity of DEF-Passaged, SPF-Duck-Passaged and Point-Mutant Recombinant Viruses in SPF Ducks
2.10. Quantification of Immune-Related Genes in Tissue Samples of Ducks Infected with Point-Mutant Recombinant Viruses
2.11. Statistical Analysis
3. Results
3.1. Genomic Source Analysis of Internal Genes of Chinese Avian-Origin H5N6 Isolates and Biological Characterization and Phylogenetic of the WH0109 Virus
3.2. WH0109-P10 Exhibited Enhanced Pathogenicity in SPF Ducks Compared with WH0109-P1
3.3. Continuous Passage in SPF Ducks Significantly Enhanced Pathogenicity and Viral Loads Compared with the First Passage
3.4. Rescue of Point-Mutant Viruses and Evaluation of Their Basic Biological Characteristics
3.5. rW-NS1-F161L Exhibited Enhanced Pathogenicity in SPF Ducks
3.6. GISAID Database Analysis of Amino Acid Sites During Serial Passage
4. Discussion
Supplementary Materials
Author Contributions
Funding
Data Availability Statement
Conflicts of Interest
References
- Du, Y.; Chen, M.; Yang, J.; Jia, Y.; Han, S.; Holmes, E.C.; Cui, J. Molecular Evolution and Emergence of H5N6 Avian Influenza Virus in Central China. J. Virol. 2017, 91, e00143-17. [Google Scholar] [CrossRef] [PubMed]
- Bi, Y.; Chen, Q.; Wang, Q.; Chen, J.; Jin, T.; Wong, G.; Quan, C.; Liu, J.; Wu, J.; Yin, R.; et al. Genesis, Evolution and Prevalence of H5N6 Avian Influenza Viruses in China. Cell Host Microbe 2016, 20, 810–821. [Google Scholar] [CrossRef] [PubMed]
- Li, H.; Li, Q.; Li, B.; Guo, Y.; Xing, J.; Xu, Q.; Liu, L.; Zhang, J.; Qi, W.; Jia, W.; et al. Continuous Reassortment of Clade 2.3.4.4 H5N6 Highly Pathogenetic Avian Influenza Viruses Demonstrating High Risk to Public Health. Pathogens 2020, 9, 670. [Google Scholar] [CrossRef] [PubMed]
- Li, Y.; Li, M.; Li, Y.; Tian, J.; Bai, X.; Yang, C.; Shi, J.; Ai, R.; Chen, W.; Zhang, W.; et al. Outbreaks of Highly Pathogenic Avian Influenza (H5N6) Virus Subclade 2.3.4.4h in Swans, Xinjiang, Western China, 2020. Emerg. Infect. Dis. 2020, 26, 2956–2960. [Google Scholar] [CrossRef]
- Turner, J.C.M.; Barman, S.; Feeroz, M.M.; Hasan, M.K.; Akhtar, S.; Jeevan, T.; Walker, D.; Franks, J.; Seiler, P.; Mukherjee, N.; et al. Highly Pathogenic Avian Influenza A(H5N6) Virus Clade 2.3.4.4h in Wild Birds and Live Poultry Markets, Bangladesh. Emerg. Infect. Dis. 2021, 27, 2492–2494. [Google Scholar] [CrossRef]
- Kwon, J.H.; Bertran, K.; Lee, D.H.; Criado, M.F.; Killmaster, L.; Pantin-Jackwood, M.J.; Swayne, D.E. Diverse infectivity, transmissibility, and pathobiology of clade 2.3.4.4 H5Nx highly pathogenic avian influenza viruses in chickens. Emerg. Microbes Infect. 2023, 12, 2218945. [Google Scholar] [CrossRef]
- Wu, Y.; Xu, N.; Li, Z.; Lu, Z.; Dong, Y.; Guo, Y.; Bian, Y.; Li, K.; Huo, C.; Qin, T.; et al. Isolation of reassortant H5N1 and H5N8 avian influenza viruses from co-infections and their host-dependent replication dynamics. Vet. Microbiol. 2026, 316, 110971. [Google Scholar] [CrossRef]
- He, Z.; Wang, X.; Lin, Y.; Feng, S.; Huang, X.; Zhao, L.; Zhang, J.; Ding, Y.; Li, W.; Yuan, R.; et al. Genetic characteristics of waterfowl-origin H5N6 highly pathogenic avian influenza viruses and their pathogenesis in ducks and chickens. Front. Microbiol. 2023, 14, 1211355. [Google Scholar] [CrossRef]
- Wang, B.; Su, Q.; Luo, J.; Li, M.; Wu, Q.; Chang, H.; Du, J.; Huang, C.; Ma, J.; Han, S.; et al. Differences in Highly Pathogenic H5N6 Avian Influenza Viral Pathogenicity and Inflammatory Response in Chickens and Ducks. Front. Microbiol. 2021, 12, 593202. [Google Scholar] [CrossRef]
- Kwon, J.H.; Noh, J.Y.; Jeong, J.H.; Jeong, S.; Lee, S.H.; Kim, Y.J.; Yuk, S.S.; Lee, D.H.; Bae, Y.C.; Park, S.C.; et al. Different pathogenicity of two strains of clade 2.3.4.4c H5N6 highly pathogenic avian influenza viruses bearing different PA and NS gene in domestic ducks. Virology 2019, 530, 11–18. [Google Scholar] [CrossRef]
- Zhao, W.; Liu, X.; Zhang, X.; Qiu, Z.; Jiao, J.; Li, Y.; Gao, R.; Wang, X.; Hu, J.; Liu, X.; et al. Virulence and transmission characteristics of clade 2.3.4.4b H5N6 subtype avian influenza viruses possessing different internal gene constellations. Virulence 2023, 14, 2250065. [Google Scholar] [CrossRef]
- Uchida, Y.; Mine, J.; Takemae, N.; Tanikawa, T.; Tsunekuni, R.; Saito, T. Comparative pathogenicity of H5N6 subtype highly pathogenic avian influenza viruses in chicken, Pekin duck and Muscovy duck. Transbound. Emerg. Dis. 2019, 66, 1227–1251. [Google Scholar] [CrossRef]
- Ito, T.; Goto, H.; Yamamoto, E.; Tanaka, H.; Takeuchi, M.; Kuwayama, M.; Kawaoka, Y.; Otsuki, K. Generation of a highly pathogenic avian influenza A virus from an avirulent field isolate by passaging in chickens. J. Virol. 2001, 75, 4439–4443. [Google Scholar] [CrossRef] [PubMed]
- Song, X.; Huang, Y.; Xiao, H.; Liu, D.; Gao, G.F. Stable non-synonymous substitutions on NS gene (NS1 and NS2 proteins) of Qinghai Lake H5N1 influenza virus (Clade 2.2) after successive passages in Muscovy ducks. Sci. China Ser. C Life Sci. 2009, 52, 847–853. [Google Scholar] [CrossRef]
- Ridenour, C.; Williams, S.M.; Jones, L.; Tompkins, S.M.; Tripp, R.A.; Mundt, E. Serial passage in ducks of a low-pathogenic avian influenza virus isolated from a chicken reveals a high mutation rate in the hemagglutinin that is likely due to selection in the host. Arch. Virol. 2015, 160, 2455–2470. [Google Scholar] [CrossRef]
- Li, Y.; Chen, S.; Zhang, X.; Fu, Q.; Zhang, Z.; Shi, S.; Zhu, Y.; Gu, M.; Peng, D.; Liu, X. A 20-amino-acid deletion in the neuraminidase stalk and a five-amino-acid deletion in the NS1 protein both contribute to the pathogenicity of H5N1 avian influenza viruses in mallard ducks. PLoS ONE 2014, 9, e95539. [Google Scholar] [CrossRef]
- Hu, J.; Hu, Z.; Mo, Y.; Wu, Q.; Cui, Z.; Duan, Z.; Huang, J.; Chen, H.; Chen, Y.; Gu, M.; et al. The PA and HA gene-mediated high viral load and intense innate immune response in the brain contribute to the high pathogenicity of H5N1 avian influenza virus in mallard ducks. J. Virol. 2013, 87, 11063–11075. [Google Scholar] [CrossRef]
- Song, J.; Feng, H.; Xu, J.; Zhao, D.; Shi, J.; Li, Y.; Deng, G.; Jiang, Y.; Li, X.; Zhu, P.; et al. The PA protein directly contributes to the virulence of H5N1 avian influenza viruses in domestic ducks. J. Virol. 2011, 85, 2180–2188. [Google Scholar] [CrossRef]
- Nao, N.; Kajihara, M.; Manzoor, R.; Maruyama, J.; Yoshida, R.; Muramatsu, M.; Miyamoto, H.; Igarashi, M.; Eguchi, N.; Sato, M.; et al. A Single Amino Acid in the M1 Protein Responsible for the Different Pathogenic Potentials of H5N1 Highly Pathogenic Avian Influenza Virus Strains. PLoS ONE 2015, 10, e0137989. [Google Scholar] [CrossRef] [PubMed]
- Trifinopoulos, J.; Nguyen, L.T.; von Haeseler, A.; Minh, B.Q. W-IQ-TREE: A fast online phylogenetic tool for maximum likelihood analysis. Nucleic Acids Res. 2016, 44, W232–W235. [Google Scholar] [CrossRef] [PubMed]
- Reed, L.J.; Muench, H. A simple method of estimating fifty per cent endpoints. Am. J. Epidemiol. 1938, 27, 493–497. [Google Scholar] [CrossRef]
- Hussain, S.; Turnbull, M.L.; Wise, H.M.; Jagger, B.W.; Beard, P.M.; Kovacikova, K.; Taubenberger, J.K.; Vervelde, L.; Engelhardt, O.G.; Digard, P. Mutation of Influenza A Virus PA-X Decreases Pathogenicity in Chicken Embryos and Can Increase the Yield of Reassortant Candidate Vaccine Viruses. J. Virol. 2019, 93, e01551-18. [Google Scholar] [CrossRef] [PubMed]
- Yang, H.; Dong, Y.; Bian, Y.; Xu, N.; Wu, Y.; Yang, F.; Du, Y.; Qin, T.; Chen, S.; Peng, D.; et al. The influenza virus PB2 protein evades antiviral innate immunity by inhibiting JAK1/STAT signalling. Nat. Commun. 2022, 13, 6288. [Google Scholar] [CrossRef] [PubMed]
- Figueroa, T.; Bessière, P.; Coggon, A.; Bouwman, K.M.; van der Woude, R.; Delverdier, M.; Verheije, M.H.; de Vries, R.P.; Volmer, R. The Microbiota Contributes to the Control of Highly Pathogenic H5N9 Influenza Virus Replication in Ducks. J. Virol. 2020, 94, e00289-20. [Google Scholar] [CrossRef] [PubMed Central]
- Yang, H.; Wang, Y.; Jin, S.; Pang, Q.; Shan, A.; Feng, X. Dietary resveratrol alleviated lipopolysaccharide-induced ileitis through Nrf2 and NF-κB signalling pathways in ducks (Anas platyrhynchos). J. Anim. Physiol. Anim. Nutr. 2022, 106, 1306-1320. [Google Scholar] [CrossRef]
- Bessière, P.; Figueroa, T.; Coggon, A.; Foret-Lucas, C.; Houffschmitt, A.; Fusade-Boyer, M.; Dupré, G.; Guérin, J.L.; Delverdier, M.; Volmer, R. Opposite Outcomes of the Within-Host Competition between High- and Low-Pathogenic H5N8 Avian Influenza Viruses in Chickens Compared to Ducks. J.Virol. 2022, 96, e0136621. [Google Scholar] [CrossRef]
- Abdelwhab, E.-S.M.; Veits, J.; Mettenleiter, T.C. Genetic changes that accompanied shifts of low pathogenic avian influenza viruses toward higher pathogenicity in poultry. Virulence 2013, 4, 441–452. [Google Scholar] [CrossRef]
- Świętoń, E.; Olszewska-Tomczyk, M.; Giza, A.; Śmietanka, K. Evolution of H9N2 low pathogenic avian influenza virus during passages in chickens. Infect. Genet. Evol. J. Mol. Epidemiol. Evol. Genet. Infect. Dis. 2019, 75, 103979. [Google Scholar] [CrossRef]
- Zhang, C.; Li, Y.; Zhang, N.; Sun, J.; Tian, D.; Duan, X.; Yang, J.; Bi, Y. Dynamic adaptation mutations and pathogenic characterization of a mouse-adapted seasonal human H3N2 influenza virus. Virol. J. 2025, 22, 223. [Google Scholar] [CrossRef]
- Dai, M.; Zhu, S.; An, Z.; You, B.; Li, Z.; Yao, Y.; Nair, V.; Liao, M. Dissection of key factors correlating with H5N1 avian influenza virus driven inflammatory lung injury of chicken identified by single-cell analysis. PLoS Pathog. 2023, 19, e1011685. [Google Scholar] [CrossRef]
- Evseev, D.; Magor, K.E. Innate Immune Responses to Avian Influenza Viruses in Ducks and Chickens. Vet. Sci. 2019, 6, 5. [Google Scholar] [CrossRef]
- Wang, Z.; Cheng, X.; Liu, J.; Sun, Y. Duck-origin H5N6 avian influenza threatens public health: A challenge for poultry vaccination in China. Lancet Microbe 2025, 6, 101203. [Google Scholar] [CrossRef]
- Huang, J.; Wu, S.; Wu, W.; Liang, Y.; Zhuang, H.; Ye, Z.; Qu, X.; Liao, M.; Jiao, P. The Biological Characteristics of Novel H5N6 Highly Pathogenic Avian Influenza Virus and Its Pathogenesis in Ducks. Front. Microbiol. 2021, 12, 628545. [Google Scholar] [CrossRef]
- Park, M.J.; Cha, R.M.; Kye, S.J.; Lee, Y.N.; Kim, N.Y.; Baek, Y.G.; Heo, G.B.; Sagong, M.; Lee, K.N.; Lee, Y.J.; et al. Pathogenicity of H5N8 High Pathogenicity Avian Influenza Virus in Chickens and Ducks from South Korea in 2020–2021. Viruses 2021, 13, 1903. [Google Scholar] [CrossRef]
- Jia, D.; Rahbar, R.; Chan, R.W.; Lee, S.M.; Chan, M.C.; Wang, B.X.; Baker, D.P.; Sun, B.; Peiris, J.S.; Nicholls, J.M.; et al. Influenza virus non-structural protein 1 (NS1) disrupts interferon signaling. PLoS ONE 2010, 5, e13927. [Google Scholar] [CrossRef]
- Haye, K.; Burmakina, S.; Moran, T.; García-Sastre, A.; Fernandez-Sesma, A. The NS1 protein of a human influenza virus inhibits type I interferon production and the induction of antiviral responses in primary human dendritic and respiratory epithelial cells. J. Virol. 2009, 83, 6849–6862. [Google Scholar] [CrossRef] [PubMed]
- Abd El-Hamid, H.S.; Shafi, M.E.; Albaqami, N.M.; Ellakany, H.F.; Abdelaziz, N.M.; Abdelaziz, M.N.; Abd El-Hack, M.E.; Taha, A.E.; Alanazi, K.M.; Elbestawy, A.R. Sequence analysis and pathogenicity of Avian Orthoavulavirus 1 strains isolated from poultry flocks during 2015–2019. BMC Vet. Res. 2020, 16, 253. [Google Scholar] [CrossRef] [PubMed]
- Davidson, S.; Crotta, S.; McCabe, T.M.; Wack, A. Pathogenic potential of interferon αβ in acute influenza infection. Nat. Commun. 2014, 5, 3864. [Google Scholar] [CrossRef] [PubMed]
- Evseev, D.; Miranzo-Navarro, D.; Fleming-Canepa, X.; Webster, R.G.; Magor, K.E. Avian Influenza NS1 Proteins Inhibit Human, but Not Duck, RIG-I Ubiquitination and Interferon Signaling. J. Virol. 2022, 96, e00776-22. [Google Scholar] [CrossRef]
- Wang, X.; Li, M.; Zheng, H.; Muster, T.; Palese, P.; Beg, A.A.; García-Sastre, A. Influenza A virus NS1 protein prevents activation of NF-kappaB and induction of alpha/beta interferon. J. Virol. 2000, 74, 11566–11573. [Google Scholar] [CrossRef]
- Lopes, A.M.; Domingues, P.; Zell, R.; Hale, B.G. Structure-Guided Functional Annotation of the Influenza A Virus NS1 Protein Reveals Dynamic Evolution of the p85β-Binding Site during Circulation in Humans. J. Virol. 2017, 91, e01081-17. [Google Scholar] [CrossRef]
- Signore, A.V.; Giacinti, J.; Jones, M.E.B.; Erdelyan, C.N.G.; McLaughlin, A.; Alkie, T.N.; Cox, S.; Lair, S.; Jardine, C.M.; Stevens, B.; et al. Spatiotemporal reconstruction of the North American A(H5N1) outbreak reveals successive lineage replacements by descendant reassortants. Sci. Adv. 2025, 11, eadu4909. [Google Scholar] [CrossRef]
- Lee, D.H.; Bertran, K.; Kwon, J.H.; Swayne, D.E. Evolution, global spread, and pathogenicity of highly pathogenic avian influenza H5Nx clade 2.3.4.4. J. Vet. Sci. 2017, 18, 269–280. [Google Scholar] [CrossRef]
- Li, M.; Liu, H.; Bi, Y.; Sun, J.; Wong, G.; Liu, D.; Li, L.; Liu, J.; Chen, Q.; Wang, H.; et al. Highly Pathogenic Avian Influenza A(H5N8) Virus in Wild Migratory Birds, Qinghai Lake, China. Emerg. Infect. Dis. 2017, 23, 637–641. [Google Scholar] [CrossRef] [PubMed]
- Lewis, N.S.; Banyard, A.C.; Whittard, E.; Karibayev, T.; Al Kafagi, T.; Chvala, I.; Byrne, A.; Meruyert Akberovna, S.; King, J.; Harder, T.; et al. Emergence and spread of novel H5N8, H5N5 and H5N1 clade 2.3.4.4 highly pathogenic avian influenza in 2020. Emerg. Microbes Infect. 2021, 10, 148–151. [Google Scholar] [CrossRef] [PubMed]
- Cui, P.; Zeng, X.; Li, X.; Li, Y.; Shi, J.; Zhao, C.; Qu, Z.; Wang, Y.; Guo, J.; Gu, W.; et al. Genetic and biological characteristics of the globally circulating H5N8 avian influenza viruses and the protective efficacy offered by the poultry vaccine currently used in China. Sci. China. Life Sci. 2022, 65, 795–808. [Google Scholar] [CrossRef] [PubMed]
- Khalil, A.M.; Fujimoto, Y.; Kojima, I.; Esaki, M.; Ri, K.; Masatani, T.; Matsui, T.; Ozawa, M. Genetic Characterization of H5N8 Highly Pathogenic Avian Influenza Viruses Isolated from Falcated Ducks and Environmental Water in Japan in November 2020. Pathogens 2021, 10, 171. [Google Scholar] [CrossRef]
- Martins de Camargo, M.; Caetano, A.R.; Ferreira de Miranda Santos, I.K. Evolutionary pressures rendered by animal husbandry practices for avian influenza viruses to adapt to humans. iScience 2022, 25, 104005. [Google Scholar] [CrossRef]
- Su, Y.C.F.; Bahl, J.; Joseph, U.; Butt, K.M.; Peck, H.A.; Koay, E.S.C.; Oon, L.L.E.; Barr, I.G.; Vijaykrishna, D.; Smith, G.J.D. Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection. Nat. Commun. 2015, 6, 7952. [Google Scholar] [CrossRef]
- Boni, M.F. Vaccination and antigenic drift in influenza. Vaccine 2008, 26, C8–C14. [Google Scholar] [CrossRef]
- Zhang, G.; Shi, Y.; Ge, H.; Wang, Y.; Lu, L.; Jiang, S.; Wang, Q. Genomic signatures and host adaptation of H5N1 clade 2.3.4.4b: A call for global surveillance and multi-target antiviral strategies. Curr. Res. Microb. Sci. 2025, 8, 100377. [Google Scholar] [CrossRef]








| Gene | PB2 | PB1 | PA | HA | NP | NA | M1 | M2 | NS1 | NS2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Amino acid mutation in vitro | / | / | / | H486Y | / | K251M a K251I a | T227A a R243W a | R45C H90Y | T86I A127V a F161L a A172V A220Va | / |
| Amino acid mutation in vivo | G347C T351I V356A A370V T378I I648L | / | / | / | V194I b D375E N473H c | Q216H K251M a K251I a D375N | P54L R72W S195L T227A a R243W a | P25S | T56I T76A A127V a F129L c F161L a R215W c A220V a | / |
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Wu, Y.; Li, Z.; Xu, N.; Lu, Z.; Dong, Y.; Li, K.; Bian, Y.; Huo, C.; Qin, T.; Chen, S.; et al. An NS1-F161L Substitution Determines Host-Driven Virulence Enhancement of H5N6 Avian Influenza Virus in Ducks. Viruses 2026, 18, 488. https://doi.org/10.3390/v18050488
Wu Y, Li Z, Xu N, Lu Z, Dong Y, Li K, Bian Y, Huo C, Qin T, Chen S, et al. An NS1-F161L Substitution Determines Host-Driven Virulence Enhancement of H5N6 Avian Influenza Virus in Ducks. Viruses. 2026; 18(5):488. https://doi.org/10.3390/v18050488
Chicago/Turabian StyleWu, Yuwei, Zhifan Li, Nuo Xu, Zijun Lu, Yurui Dong, Kunlin Li, Ying Bian, Chenzhi Huo, Tao Qin, Sujuan Chen, and et al. 2026. "An NS1-F161L Substitution Determines Host-Driven Virulence Enhancement of H5N6 Avian Influenza Virus in Ducks" Viruses 18, no. 5: 488. https://doi.org/10.3390/v18050488
APA StyleWu, Y., Li, Z., Xu, N., Lu, Z., Dong, Y., Li, K., Bian, Y., Huo, C., Qin, T., Chen, S., Yang, H., Peng, D., & Liu, X. (2026). An NS1-F161L Substitution Determines Host-Driven Virulence Enhancement of H5N6 Avian Influenza Virus in Ducks. Viruses, 18(5), 488. https://doi.org/10.3390/v18050488

